FF:10423-106C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005371 | |||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005371 | |||
|accession_numbers=CAGE;DRX007849;DRR008721;DRZ000146;DRZ001531;DRZ011496;DRZ012881 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057123;DRR062882;DRZ007958 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575,FF:0100798 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101575 | |fonse_cell_line=FF:0101575 | ||
|fonse_cell_line_closure=FF:0101575 | |fonse_cell_line_closure=FF:0101575 | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aBeWo.CNhs10740.10423-106C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aBeWo.CNhs10740.10423-106C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aBeWo.CNhs10740.10423-106C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aBeWo.CNhs10740.10423-106C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aBeWo.CNhs10740.10423-106C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10423-106C9 | |id=FF:10423-106C9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100798 | ||
|is_obsolete= | |||
|library_id=CNhs10740 | |||
|library_id_phase_based=2:CNhs10740 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10423 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10423 | |||
|name=choriocarcinoma cell line:BeWo | |name=choriocarcinoma cell line:BeWo | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10740,LSID692,release008,COMPLETED | |profile_hcage=CNhs10740,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.26810843751286,0,0.298957359768809,0,0,0.271912692094013,0.10355501898227,-0.131932337633656,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0.0373299241805104,0,-0.0816194357864744,0,0,0,0.051777509491135,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0164927057979225,0,0,0,0,0,0,0,0,0.59879208427663,0,0,0,0,0,0,0,-0.0252887866806519,0,0,0.00621139176917263,0.0717035745619533,0,0,0,0,0,0,0,0.0717035745619533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0387772515168165,0,0,0,-0.0852655000577148,-0.175345615414892,0.0186649620902552,0,0,0,0.200235530768382,-0.101147276620385,0,0,0,0,0,0,0,0,0,0,0.222132673063165,0,0,0,0,0,0,0.146800962642307,0.0717035745619533,0,0,-0.0483689238882358,-0.0417587569165405,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0373299241805104,0.200235530768382,0,0,0.417577571649937,0,0,0,0,0,0,0,0,0.155233831133806,0.0545167493712318,0.337168062145571,0.551031826691892,0.0358517872809766,0,-0.34677663355198,0,0,0,0.0331014428620205,0.0717035745619533,0,0.0717035745619533,0.161004906715182,0,0.150079413573366,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.140933336845922,0,-0.068390381508729,0.143391098204193,0,0,0,0,-0.198537094772371,0,0.0401254229214418,-0.0827201683234173,-0.184281663922296,-0.582657523736515,0.0159910777807713,0,0,0,-0.555002536040132,0.0622544364241358,0,0,-0.121779851751874,-0.162684656470404,0,0,-0.391044581551635,0,-0.161967301535061,-0.0082538214750902,0,0.117669444238905,0,0,0.0373299241805104,0,0,0,0,0,0.10355501898227,0,0,0.0449729346059677,0.133143752598447,0,0.246241970895123,0.432230722180399,0.0373299241805104,-0.0641276758239868,0,0.0103898823654999,0.805459206705705,0.109261537505317,0,0.238769413934394,0,0.0680057829808631,-0.131371708694128,-0.461914072633713,-0.0852655000577148,-0.147401849371139,-0.118278144987894,0,-0.449556888135418,-0.178628926108102,-0.0173719986253177,-0.075487637846321,-0.0302447930437535,0.502801329058503,0.233707464264689,0,0.486349113129536,0,0.665253146975148,0,0.0753781504641329,0.0876627269228033,0.0726231338831935,-0.202997141952086,0.175436805003602,0.613341231812375,-0.089089837877667,0.0149842209145613,-0.222397834188829,-0.0050325904066517,-0.385720537622723,0.0479644640061706,0,0.0321356966080878,0.0048241922583117,-0.150324539812609,0.0544255651768852,0,-0.322972555095798,-0.0683442610773682,0,-0.372819440791274,-0.343911130131265,0,0,-0.0798902800262029,0,0.037526386902336,0,0.0271711337691331,0,-0.183686209533973,-0.107261420849767,-0.129300542573275,0,0.0731762967624245,0,-0.088497294527618,0,0.018367730126239,0.200241944808565,0.0373299241805104,-0.0149170200026464,0,0.0723352126422552,-0.140001019493967,0.0854829073499004,-0.422394805391737,1.1550326041721,-0.142509148609503,-0.173915850660339,0.352973249767588,-0.0088798862753996,0.110370744748922,-0.0881268324752877,0,0.0478949206343234,-0.679498131621524,0,-0.238232236785223,0.161004906715182,-0.0824220183792284,0,0.369278684386616,0,0.0865371266344661,-0.54043375147324,-0.0858334394067424,-0.131912184399922,0,0.082261093883569,0.434782813552162,0.0361038391898481,0,-0.0253707454630339,0.949325233773816,-0.0171378550417838,0.0823640120022443,0.304468135321666,0.135990836684105,0,-0.145563729097451,0,0.0373299241805104,-0.016878177909694,0.0627948442416994,0.0373299241805104,-0.0596968537432525,-0.0418554380813573,-0.0812896883854792,-0.0786411492544237,0.0373299241805104,0,0.809990903689546,0,0.161004906715182,0.802203222129175,-0.0636048451378017,0.812058172772127,-0.253326341486756,-0.130339162171769,0.455176044793855,0,0,0.0342075933163856,0,-0.157726492556063,0,0,-0.183266682452396,-0.116628112990133,0,0,0,0.0325785154272298,0,0,0,0,0,0,0,-0.143470213783842,0.0318657589439831,0,0,0,0,0,0,0,-0.0339823501452063,0,0,-1.25650211525677,0,0.530247995031767,0,0,0.0186649620902552,0,-0.0824941742606191,0.167158947896053,0.0373299241805104,0.125292191854471,0,0,0,0,-0.048811065608701,0,0,0.0186649620902552,0,-0.0204005328731536,-0.14410130669816,0,0,0,-0.23962447742128,0,0,0,0,0.137082862121421,0,0,-0.0147706668758577,0,-0.27277346420777,-0.044251955366331,0,0.268798660558008,-0.248366073927025,0.269936329218541,0,0,-0.100342225074705,0,0.00146807197702205,0.203001853124967,-0.0823702229656663,0.0373299241805104,0,0,0,0,0,0.133229228292856,0,-0.142610937837802,0.0876292967721116,0,0.00567553983516834,0,0,0.0373299241805104,0,0.0373299241805104,0,0,0,-0.160869182745385,-0.0205204820965571,0,0,0,0,0,0,0,0.0304107262923288,0.0785160934507172,0,0,0,0,0,0.0717035745619533,0,0,0.14573356684728,0.222132673063165,0,0,0,0,-0.0252887866806519,0,0.10355501898227,0,0.0373299241805104,-0.564807121153884,0,0,-0.116357225478332,0,0,0,0,0,0,0,0.00038889728905133,0,0,0,0,0,0.294258485614489,-0.131932337633656,0.498886950845209,0,0,0,0,0.10355501898227,0,-0.171278279223821,0,0,0,0,-0.0765544495284668,0.597914719537619,0,0,0.493118334748463,0,0.271912692094013,0,0,0,0.0186649620902552,0,0.161195490978516,0.128577449176051,0.0186649620902552,0.211735359281561,0,0,0,0,0,0,0,0,0,0,0,0,0.290506702591364,-0.0061106166899671,-0.249877591792399,-0.123202864573785,0,0,-0.139073128745928,0,0,0,0,0,0,0.00451136325244958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717035745619533,0,0,0,0,0,0,0.0691392685642429,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0215903382191362,0,0,0.0085619355272687,0,0,0,-0.0361644715148935,-0.034489263094184,-0.134363070752575,0,0,0,0.0741918766935965,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0.158727838594954,0,0,0,0,0,0,0.0373299241805104,0,0,0,0,1.39420251641225,0,0,0,0,0,0,0,0,0.432230722180399,-0.0816194357864744,0,0,0,0,0,0,0,0,0,0,0,0.0186649620902552,0.0186649620902552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187110447774228,0.0358517872809766,0,0,0,0,0,0,0.111321370102832,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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 78: | ||
|rna_tube_id=106C9 | |rna_tube_id=106C9 | ||
|rna_weight_ug=72.6381 | |rna_weight_ug=72.6381 | ||
|rnaseq_library_id=RDhi10066 | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1644 | |sample_cell_catalog=RCB1644 | ||
|sample_cell_line=BeWo | |sample_cell_line=BeWo | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.48747609553709e-270!GO:0043226;organelle;2.60826844785648e-228!GO:0043229;intracellular organelle;5.34434853208982e-228!GO:0043231;intracellular membrane-bound organelle;3.59098872669738e-226!GO:0043227;membrane-bound organelle;5.14173057507984e-226!GO:0005737;cytoplasm;1.89026202157787e-170!GO:0044422;organelle part;2.19315696322755e-158!GO:0044446;intracellular organelle part;5.58160350210372e-157!GO:0044444;cytoplasmic part;1.53267999059905e-122!GO:0005634;nucleus;1.53315231206278e-110!GO:0044237;cellular metabolic process;1.90273959587057e-110!GO:0044238;primary metabolic process;1.50090419145403e-109!GO:0032991;macromolecular complex;3.539829020778e-108!GO:0043170;macromolecule metabolic process;8.11818396275622e-102!GO:0030529;ribonucleoprotein complex;2.9432577068949e-94!GO:0044428;nuclear part;1.69748954354571e-85!GO:0003723;RNA binding;1.14924362585324e-83!GO:0043233;organelle lumen;5.30970039090761e-83!GO:0031974;membrane-enclosed lumen;5.30970039090761e-83!GO:0005739;mitochondrion;1.42224747084416e-68!GO:0005515;protein binding;3.21980111336729e-66!GO:0043283;biopolymer metabolic process;2.47087498874145e-62!GO:0006412;translation;8.29124605402259e-59!GO:0010467;gene expression;2.35525986147652e-58!GO:0005840;ribosome;1.15425522692998e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02539603363136e-56!GO:0006396;RNA processing;4.79104842543153e-56!GO:0043234;protein complex;1.71558967008347e-54!GO:0031981;nuclear lumen;1.27536956853785e-52!GO:0003735;structural constituent of ribosome;3.0326629775234e-49!GO:0019538;protein metabolic process;8.206876128994e-48!GO:0031090;organelle membrane;2.47273024178787e-46!GO:0015031;protein transport;6.49713437071315e-46!GO:0016043;cellular component organization and biogenesis;4.19950051687297e-45!GO:0033036;macromolecule localization;4.25189545254809e-45!GO:0033279;ribosomal subunit;1.96222401747985e-44!GO:0009058;biosynthetic process;4.00484933666345e-44!GO:0016071;mRNA metabolic process;5.75012041169687e-44!GO:0044249;cellular biosynthetic process;1.4747496975932e-43!GO:0009059;macromolecule biosynthetic process;5.38935756302464e-43!GO:0044260;cellular macromolecule metabolic process;2.08691464187707e-42!GO:0044429;mitochondrial part;3.10812443436134e-42!GO:0044267;cellular protein metabolic process;6.79290885777654e-42!GO:0043228;non-membrane-bound organelle;3.19291113313086e-41!GO:0043232;intracellular non-membrane-bound organelle;3.19291113313086e-41!GO:0045184;establishment of protein localization;3.77855744273314e-41!GO:0003676;nucleic acid binding;1.24492051453514e-40!GO:0008104;protein localization;1.55091265032982e-40!GO:0008380;RNA splicing;2.18515208398772e-40!GO:0006397;mRNA processing;2.20340886494535e-39!GO:0031967;organelle envelope;9.68580581716174e-39!GO:0031975;envelope;2.35548526474574e-38!GO:0006259;DNA metabolic process;4.67078374986954e-38!GO:0065003;macromolecular complex assembly;1.50583895841473e-37!GO:0046907;intracellular transport;1.35875038513831e-35!GO:0006996;organelle organization and biogenesis;1.85212465638896e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.43751835464018e-35!GO:0022607;cellular component assembly;1.74111014618752e-34!GO:0005654;nucleoplasm;5.72545597234487e-33!GO:0005829;cytosol;6.99023955862056e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.85963278311304e-32!GO:0007049;cell cycle;1.7389999808318e-31!GO:0006886;intracellular protein transport;5.28512887299222e-30!GO:0016070;RNA metabolic process;1.81804043576898e-29!GO:0005681;spliceosome;2.51249338102803e-29!GO:0000166;nucleotide binding;2.05357592679994e-27!GO:0044445;cytosolic part;4.95502636837525e-26!GO:0005740;mitochondrial envelope;6.3871510448326e-26!GO:0019866;organelle inner membrane;7.01284272611202e-26!GO:0044451;nucleoplasm part;8.87887743169575e-26!GO:0006974;response to DNA damage stimulus;3.42172961699501e-25!GO:0031966;mitochondrial membrane;6.61309963088428e-24!GO:0005743;mitochondrial inner membrane;1.38938342397992e-23!GO:0015935;small ribosomal subunit;2.5100111765318e-23!GO:0006119;oxidative phosphorylation;8.60676822762062e-23!GO:0022402;cell cycle process;8.6408993636884e-23!GO:0005694;chromosome;9.4019045688096e-23!GO:0016874;ligase activity;1.46574650047091e-22!GO:0051649;establishment of cellular localization;3.06091333100812e-22!GO:0015934;large ribosomal subunit;3.38920525883716e-22!GO:0006281;DNA repair;3.90607761399904e-22!GO:0051641;cellular localization;5.15903638078381e-22!GO:0000278;mitotic cell cycle;1.83025624841225e-21!GO:0022618;protein-RNA complex assembly;2.57443699498109e-21!GO:0044455;mitochondrial membrane part;2.72891395102854e-21!GO:0044427;chromosomal part;1.64884485326575e-20!GO:0032553;ribonucleotide binding;3.92231595084209e-20!GO:0032555;purine ribonucleotide binding;3.92231595084209e-20!GO:0006512;ubiquitin cycle;9.28747826669771e-20!GO:0005730;nucleolus;1.01335655918072e-19!GO:0031980;mitochondrial lumen;1.23636272074445e-19!GO:0005759;mitochondrial matrix;1.23636272074445e-19!GO:0006457;protein folding;2.11095548683247e-19!GO:0022403;cell cycle phase;3.90174407707183e-19!GO:0017076;purine nucleotide binding;6.19610328477612e-19!GO:0012505;endomembrane system;6.72861833963304e-19!GO:0005524;ATP binding;1.17020803246825e-18!GO:0017111;nucleoside-triphosphatase activity;3.52353847479454e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;3.7346127886119e-18!GO:0016462;pyrophosphatase activity;4.601592677015e-18!GO:0051301;cell division;5.56842496780084e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.70057649791701e-18!GO:0009719;response to endogenous stimulus;7.01363616694674e-18!GO:0032559;adenyl ribonucleotide binding;7.6642184619466e-18!GO:0044265;cellular macromolecule catabolic process;8.94699488380888e-18!GO:0008134;transcription factor binding;1.94404990824043e-17!GO:0008135;translation factor activity, nucleic acid binding;1.94404990824043e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.08857587935211e-17!GO:0000087;M phase of mitotic cell cycle;8.01541642919119e-17!GO:0051276;chromosome organization and biogenesis;8.09698431086566e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.04567184966499e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.26315067163202e-16!GO:0005761;mitochondrial ribosome;1.50229819589977e-16!GO:0000313;organellar ribosome;1.50229819589977e-16!GO:0007067;mitosis;1.62282867346106e-16!GO:0030554;adenyl nucleotide binding;1.79150946414477e-16!GO:0019941;modification-dependent protein catabolic process;1.83406355713381e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.83406355713381e-16!GO:0043285;biopolymer catabolic process;2.1520374518e-16!GO:0006605;protein targeting;2.36298470427201e-16!GO:0044257;cellular protein catabolic process;2.470237835491e-16!GO:0048770;pigment granule;3.19912898259201e-16!GO:0042470;melanosome;3.19912898259201e-16!GO:0000279;M phase;9.03950970014534e-16!GO:0005746;mitochondrial respiratory chain;1.25939530611266e-15!GO:0006260;DNA replication;1.28503476628709e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.55207506563584e-15!GO:0042623;ATPase activity, coupled;1.55237348863617e-15!GO:0051186;cofactor metabolic process;1.64270219712823e-15!GO:0009057;macromolecule catabolic process;1.98434395303554e-15!GO:0005783;endoplasmic reticulum;2.20691008950107e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.50164022334827e-15!GO:0000375;RNA splicing, via transesterification reactions;2.50164022334827e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.50164022334827e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.86619528869312e-15!GO:0044432;endoplasmic reticulum part;3.13405372633562e-15!GO:0016887;ATPase activity;3.9065948042667e-15!GO:0004386;helicase activity;5.68146913439437e-15!GO:0031965;nuclear membrane;1.16634062045913e-14!GO:0044453;nuclear membrane part;1.73797916517709e-14!GO:0042254;ribosome biogenesis and assembly;1.77491694725645e-14!GO:0044248;cellular catabolic process;1.92585725522068e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.14220721463919e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.43005345919821e-14!GO:0003954;NADH dehydrogenase activity;2.43005345919821e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.43005345919821e-14!GO:0051082;unfolded protein binding;3.18052548153009e-14!GO:0005794;Golgi apparatus;3.95964252926692e-14!GO:0030163;protein catabolic process;5.18712800462829e-14!GO:0050657;nucleic acid transport;1.06130411101347e-13!GO:0051236;establishment of RNA localization;1.06130411101347e-13!GO:0050658;RNA transport;1.06130411101347e-13!GO:0006413;translational initiation;1.23466768256387e-13!GO:0005635;nuclear envelope;1.26160987705553e-13!GO:0006403;RNA localization;1.69932111019896e-13!GO:0016604;nuclear body;2.34177064206991e-13!GO:0003743;translation initiation factor activity;4.23950858113971e-13!GO:0043412;biopolymer modification;5.076632086403e-13!GO:0005643;nuclear pore;5.68569430615497e-13!GO:0006732;coenzyme metabolic process;7.92443523909123e-13!GO:0006913;nucleocytoplasmic transport;9.55321048788848e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.1817986332402e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.32380455374987e-12!GO:0042773;ATP synthesis coupled electron transport;1.32380455374987e-12!GO:0065002;intracellular protein transport across a membrane;1.66350917492262e-12!GO:0048193;Golgi vesicle transport;1.78173540550711e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.10994581527866e-12!GO:0006446;regulation of translational initiation;2.29220753936129e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.52162605495134e-12!GO:0045271;respiratory chain complex I;2.52162605495134e-12!GO:0005747;mitochondrial respiratory chain complex I;2.52162605495134e-12!GO:0008026;ATP-dependent helicase activity;2.62520227083898e-12!GO:0006399;tRNA metabolic process;2.74681868565253e-12!GO:0051169;nuclear transport;2.94081187011683e-12!GO:0006461;protein complex assembly;3.82682292006214e-12!GO:0006323;DNA packaging;3.98756148279152e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.31301513017622e-12!GO:0051028;mRNA transport;1.22537896555226e-11!GO:0016607;nuclear speck;1.31325324793901e-11!GO:0006366;transcription from RNA polymerase II promoter;1.32097696595733e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.43885638311496e-11!GO:0046930;pore complex;5.5283143191946e-11!GO:0008565;protein transporter activity;6.76697551297566e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.23539859272601e-11!GO:0000785;chromatin;1.05229589877217e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22715322797778e-10!GO:0003712;transcription cofactor activity;1.62471389777282e-10!GO:0006464;protein modification process;1.79168909640374e-10!GO:0016192;vesicle-mediated transport;1.90663791135298e-10!GO:0005789;endoplasmic reticulum membrane;1.93081933305533e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.48693573621166e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.98855596573572e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.98855596573572e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.98855596573572e-10!GO:0043038;amino acid activation;3.3375092080533e-10!GO:0006418;tRNA aminoacylation for protein translation;3.3375092080533e-10!GO:0043039;tRNA aminoacylation;3.3375092080533e-10!GO:0051726;regulation of cell cycle;4.13077311835417e-10!GO:0000074;regulation of progression through cell cycle;4.40199087039717e-10!GO:0008639;small protein conjugating enzyme activity;4.52746709036542e-10!GO:0009259;ribonucleotide metabolic process;8.60311532023097e-10!GO:0004842;ubiquitin-protein ligase activity;9.38853525336077e-10!GO:0006364;rRNA processing;1.1784461079497e-09!GO:0019787;small conjugating protein ligase activity;1.32382968676845e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.48078338747046e-09!GO:0043687;post-translational protein modification;1.70176169981239e-09!GO:0015986;ATP synthesis coupled proton transport;1.80746747963459e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.80746747963459e-09!GO:0016072;rRNA metabolic process;1.97009635372093e-09!GO:0009150;purine ribonucleotide metabolic process;2.66902818220943e-09!GO:0005793;ER-Golgi intermediate compartment;2.85224008811908e-09!GO:0006163;purine nucleotide metabolic process;2.99426925171356e-09!GO:0051188;cofactor biosynthetic process;7.08328713861091e-09!GO:0009260;ribonucleotide biosynthetic process;7.08328713861091e-09!GO:0000775;chromosome, pericentric region;7.11162604189988e-09!GO:0006333;chromatin assembly or disassembly;7.8859160909513e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.42892321398277e-09!GO:0050794;regulation of cellular process;9.29722996614085e-09!GO:0009055;electron carrier activity;9.71356426984589e-09!GO:0006164;purine nucleotide biosynthetic process;1.00419466022298e-08!GO:0017038;protein import;1.62293570810113e-08!GO:0065004;protein-DNA complex assembly;1.75594468640941e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.83888020285579e-08!GO:0016469;proton-transporting two-sector ATPase complex;2.0541869267264e-08!GO:0005667;transcription factor complex;2.09411618356946e-08!GO:0019222;regulation of metabolic process;2.10845030222373e-08!GO:0043566;structure-specific DNA binding;2.14267443462907e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.14407618812833e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.14407618812833e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.17753458663752e-08!GO:0009141;nucleoside triphosphate metabolic process;3.45332474327913e-08!GO:0006754;ATP biosynthetic process;3.61488037791097e-08!GO:0006753;nucleoside phosphate metabolic process;3.61488037791097e-08!GO:0003697;single-stranded DNA binding;3.63973207317283e-08!GO:0009056;catabolic process;3.75630760429614e-08!GO:0006752;group transfer coenzyme metabolic process;4.259183022383e-08!GO:0012501;programmed cell death;5.17060806595763e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.29048218868659e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.29048218868659e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.42479734962491e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.42479734962491e-08!GO:0009060;aerobic respiration;5.57789887791128e-08!GO:0046034;ATP metabolic process;5.72478609511728e-08!GO:0019829;cation-transporting ATPase activity;6.47571730342617e-08!GO:0032446;protein modification by small protein conjugation;6.58620688106636e-08!GO:0016568;chromatin modification;6.78732717867332e-08!GO:0006915;apoptosis;6.82783039484183e-08!GO:0016881;acid-amino acid ligase activity;7.29758656687547e-08!GO:0051329;interphase of mitotic cell cycle;1.06219614617627e-07!GO:0016567;protein ubiquitination;1.06219614617627e-07!GO:0003713;transcription coactivator activity;1.53829023535525e-07!GO:0009108;coenzyme biosynthetic process;1.53829023535525e-07!GO:0006261;DNA-dependent DNA replication;1.69436194205333e-07!GO:0007005;mitochondrion organization and biogenesis;2.05943710365658e-07!GO:0016563;transcription activator activity;2.0925532256146e-07!GO:0048475;coated membrane;2.15333906297591e-07!GO:0030117;membrane coat;2.15333906297591e-07!GO:0043623;cellular protein complex assembly;2.15778239734298e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.19891602897752e-07!GO:0016740;transferase activity;2.25868056052191e-07!GO:0051325;interphase;2.25868056052191e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.36182374194355e-07!GO:0005819;spindle;2.59640404710383e-07!GO:0000245;spliceosome assembly;3.24013761475882e-07!GO:0005788;endoplasmic reticulum lumen;3.46389496859743e-07!GO:0045333;cellular respiration;4.9076964683694e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.24524418306274e-07!GO:0006084;acetyl-CoA metabolic process;6.06605507068389e-07!GO:0016779;nucleotidyltransferase activity;6.28697163028251e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.32427480005329e-07!GO:0006099;tricarboxylic acid cycle;7.71120926762584e-07!GO:0046356;acetyl-CoA catabolic process;7.71120926762584e-07!GO:0008219;cell death;7.77807533712495e-07!GO:0016265;death;7.77807533712495e-07!GO:0051246;regulation of protein metabolic process;8.59759921377615e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.75696294642896e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.98018681827825e-07!GO:0031323;regulation of cellular metabolic process;9.58555160560644e-07!GO:0045259;proton-transporting ATP synthase complex;9.70572309073205e-07!GO:0016853;isomerase activity;1.01362043837247e-06!GO:0015630;microtubule cytoskeleton;1.15080572692383e-06!GO:0003724;RNA helicase activity;1.49013662761079e-06!GO:0005813;centrosome;1.77153309679471e-06!GO:0051170;nuclear import;1.78128914250914e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.83046504276745e-06!GO:0007051;spindle organization and biogenesis;2.02422628507605e-06!GO:0005768;endosome;2.20597369456612e-06!GO:0051168;nuclear export;3.22807747814895e-06!GO:0008094;DNA-dependent ATPase activity;3.22874274948884e-06!GO:0005815;microtubule organizing center;3.52495687124916e-06!GO:0004298;threonine endopeptidase activity;3.8049645087814e-06!GO:0005762;mitochondrial large ribosomal subunit;4.0048381088199e-06!GO:0000315;organellar large ribosomal subunit;4.0048381088199e-06!GO:0030120;vesicle coat;4.07820545728114e-06!GO:0030662;coated vesicle membrane;4.07820545728114e-06!GO:0006613;cotranslational protein targeting to membrane;4.38390400522995e-06!GO:0005657;replication fork;4.69773501416593e-06!GO:0006606;protein import into nucleus;4.8967800763529e-06!GO:0009109;coenzyme catabolic process;5.47878445101542e-06!GO:0044431;Golgi apparatus part;5.87719027101035e-06!GO:0006334;nucleosome assembly;6.23567166485198e-06!GO:0006350;transcription;7.57213847448788e-06!GO:0031497;chromatin assembly;8.34426272268678e-06!GO:0005770;late endosome;9.08656771729115e-06!GO:0000075;cell cycle checkpoint;1.03032868433093e-05!GO:0051187;cofactor catabolic process;1.32926704493418e-05!GO:0000151;ubiquitin ligase complex;1.44807187640089e-05!GO:0010468;regulation of gene expression;1.68115895219767e-05!GO:0006520;amino acid metabolic process;2.01071475002148e-05!GO:0003690;double-stranded DNA binding;2.02393142087555e-05!GO:0016363;nuclear matrix;2.35339589599628e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.46605139538877e-05!GO:0006793;phosphorus metabolic process;2.62774023346842e-05!GO:0006796;phosphate metabolic process;2.62774023346842e-05!GO:0019752;carboxylic acid metabolic process;2.84486877251925e-05!GO:0000314;organellar small ribosomal subunit;2.86054903794016e-05!GO:0005763;mitochondrial small ribosomal subunit;2.86054903794016e-05!GO:0016787;hydrolase activity;2.9553250514404e-05!GO:0006082;organic acid metabolic process;3.19505006784723e-05!GO:0016310;phosphorylation;3.80981588290881e-05!GO:0008186;RNA-dependent ATPase activity;3.82990201037908e-05!GO:0019899;enzyme binding;4.38177334455244e-05!GO:0003682;chromatin binding;4.50275736539749e-05!GO:0003899;DNA-directed RNA polymerase activity;4.76593589210895e-05!GO:0050789;regulation of biological process;5.10390131335704e-05!GO:0043021;ribonucleoprotein binding;6.25194288739715e-05!GO:0008168;methyltransferase activity;6.59845256915634e-05!GO:0051427;hormone receptor binding;6.75210837458024e-05!GO:0048471;perinuclear region of cytoplasm;6.87304496082417e-05!GO:0043069;negative regulation of programmed cell death;6.87304496082417e-05!GO:0005798;Golgi-associated vesicle;6.8950233617538e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.69244191276653e-05!GO:0007059;chromosome segregation;7.90198805435142e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.34897713385837e-05!GO:0016741;transferase activity, transferring one-carbon groups;9.08669569419212e-05!GO:0000776;kinetochore;9.29588697355912e-05!GO:0006916;anti-apoptosis;9.71200420079348e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.81481990936078e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000102810422184683!GO:0015980;energy derivation by oxidation of organic compounds;0.000103894904060128!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000103894904060128!GO:0043066;negative regulation of apoptosis;0.000105891710172894!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000110303316845478!GO:0006612;protein targeting to membrane;0.00011779667245006!GO:0004004;ATP-dependent RNA helicase activity;0.000119763939985658!GO:0009117;nucleotide metabolic process;0.000126476496683951!GO:0035257;nuclear hormone receptor binding;0.000135367232886739!GO:0016564;transcription repressor activity;0.00014423875815376!GO:0006414;translational elongation;0.000144318357668141!GO:0005773;vacuole;0.000158534476429741!GO:0008654;phospholipid biosynthetic process;0.000159482713052113!GO:0006818;hydrogen transport;0.000162475832508231!GO:0032774;RNA biosynthetic process;0.000170889511540476!GO:0044440;endosomal part;0.00017189516444155!GO:0010008;endosome membrane;0.00017189516444155!GO:0022890;inorganic cation transmembrane transporter activity;0.000186004340150078!GO:0000139;Golgi membrane;0.000192827430417741!GO:0016859;cis-trans isomerase activity;0.000206177628907117!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000215060358755332!GO:0006351;transcription, DNA-dependent;0.000228983655695562!GO:0042981;regulation of apoptosis;0.000261536990420176!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000263743978135617!GO:0043067;regulation of programmed cell death;0.00029600465279367!GO:0006405;RNA export from nucleus;0.000296248736239096!GO:0015992;proton transport;0.000313856389302601!GO:0006302;double-strand break repair;0.000325013731279234!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000343530313182167!GO:0005525;GTP binding;0.000362609922712131!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00036323276906138!GO:0015399;primary active transmembrane transporter activity;0.00036323276906138!GO:0003729;mRNA binding;0.000407606036654811!GO:0044452;nucleolar part;0.000413243528375036!GO:0006310;DNA recombination;0.000413243528375036!GO:0003684;damaged DNA binding;0.00041528932523777!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000439297994566448!GO:0033116;ER-Golgi intermediate compartment membrane;0.000459022481523318!GO:0030867;rough endoplasmic reticulum membrane;0.000480708652557764!GO:0003678;DNA helicase activity;0.000500322704818417!GO:0000059;protein import into nucleus, docking;0.000515221149323656!GO:0008033;tRNA processing;0.000518257800086277!GO:0031324;negative regulation of cellular metabolic process;0.000535311699007252!GO:0000049;tRNA binding;0.000542678039602379!GO:0005905;coated pit;0.00057719720799437!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000617384644131269!GO:0006383;transcription from RNA polymerase III promoter;0.00062263260248599!GO:0006839;mitochondrial transport;0.000625033947609173!GO:0006402;mRNA catabolic process;0.000653539964480206!GO:0007264;small GTPase mediated signal transduction;0.000688127695981833!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000708919929954249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000708919929954249!GO:0051052;regulation of DNA metabolic process;0.000761943663879717!GO:0031252;leading edge;0.000804807789816626!GO:0005048;signal sequence binding;0.000820813124969818!GO:0008652;amino acid biosynthetic process;0.000832455439035038!GO:0006417;regulation of translation;0.000837553888716524!GO:0006626;protein targeting to mitochondrion;0.000870746200157758!GO:0051920;peroxiredoxin activity;0.00089176952354385!GO:0045454;cell redox homeostasis;0.000912394502755105!GO:0005885;Arp2/3 protein complex;0.000926010232117361!GO:0000082;G1/S transition of mitotic cell cycle;0.000944733731881683!GO:0000323;lytic vacuole;0.000951400957554415!GO:0005764;lysosome;0.000951400957554415!GO:0005684;U2-dependent spliceosome;0.00101195920256676!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102034556821541!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102034556821541!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102034556821541!GO:0006519;amino acid and derivative metabolic process;0.00103384002366093!GO:0007088;regulation of mitosis;0.00104299450365649!GO:0048500;signal recognition particle;0.00107016573284601!GO:0007006;mitochondrial membrane organization and biogenesis;0.00111481502418558!GO:0007052;mitotic spindle organization and biogenesis;0.00113208177672321!GO:0043681;protein import into mitochondrion;0.00113208177672321!GO:0051789;response to protein stimulus;0.00113219452412484!GO:0006986;response to unfolded protein;0.00113219452412484!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00119041412379748!GO:0006091;generation of precursor metabolites and energy;0.00125721345159195!GO:0003677;DNA binding;0.00130561902063515!GO:0032508;DNA duplex unwinding;0.00136133126471766!GO:0032392;DNA geometric change;0.00136133126471766!GO:0019843;rRNA binding;0.00142880042194535!GO:0045449;regulation of transcription;0.00145058645790373!GO:0045786;negative regulation of progression through cell cycle;0.00145358265959698!GO:0016251;general RNA polymerase II transcription factor activity;0.00150861597454631!GO:0030118;clathrin coat;0.00154011824840442!GO:0000786;nucleosome;0.00158668006847303!GO:0006284;base-excision repair;0.00159314765517099!GO:0007093;mitotic cell cycle checkpoint;0.00159592060670757!GO:0042802;identical protein binding;0.00170077321130482!GO:0005791;rough endoplasmic reticulum;0.00170077321130482!GO:0006352;transcription initiation;0.00173799930815494!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00174429501158459!GO:0007010;cytoskeleton organization and biogenesis;0.00178067983566028!GO:0003746;translation elongation factor activity;0.00181918532811999!GO:0004674;protein serine/threonine kinase activity;0.00182104892428364!GO:0043284;biopolymer biosynthetic process;0.00188236494504472!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00197814979668382!GO:0051087;chaperone binding;0.00201071775566244!GO:0006401;RNA catabolic process;0.00211049575521303!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00212013118910829!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00212013118910829!GO:0006338;chromatin remodeling;0.00228922723047284!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00230974866363346!GO:0005637;nuclear inner membrane;0.00246008529734197!GO:0005769;early endosome;0.00249046837869087!GO:0006268;DNA unwinding during replication;0.00252574317534707!GO:0016197;endosome transport;0.00266654484470763!GO:0003714;transcription corepressor activity;0.00269205203089631!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00280313090560944!GO:0045047;protein targeting to ER;0.00280313090560944!GO:0030036;actin cytoskeleton organization and biogenesis;0.00283225720258492!GO:0046474;glycerophospholipid biosynthetic process;0.00301856743546476!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0030498359204305!GO:0032561;guanyl ribonucleotide binding;0.00330068354013758!GO:0019001;guanyl nucleotide binding;0.00330068354013758!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00330999122773772!GO:0008312;7S RNA binding;0.00352842843056835!GO:0030176;integral to endoplasmic reticulum membrane;0.00359620041397043!GO:0031988;membrane-bound vesicle;0.00365184183238279!GO:0042393;histone binding;0.0037345706307078!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00373495133267225!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0037437362927751!GO:0032259;methylation;0.00381325658845813!GO:0016023;cytoplasmic membrane-bound vesicle;0.00382719456500486!GO:0030119;AP-type membrane coat adaptor complex;0.00386489099430016!GO:0006289;nucleotide-excision repair;0.00387766023120228!GO:0000086;G2/M transition of mitotic cell cycle;0.00388079408710772!GO:0006891;intra-Golgi vesicle-mediated transport;0.00416566057228583!GO:0030133;transport vesicle;0.00416566057228583!GO:0051252;regulation of RNA metabolic process;0.00427323175803404!GO:0016044;membrane organization and biogenesis;0.00429291091286454!GO:0008234;cysteine-type peptidase activity;0.00429767794127936!GO:0046983;protein dimerization activity;0.00430783852675007!GO:0031982;vesicle;0.00437449080561103!GO:0009892;negative regulation of metabolic process;0.00439249112320167!GO:0006650;glycerophospholipid metabolic process;0.00448279167641174!GO:0030029;actin filament-based process;0.00456112573134387!GO:0043492;ATPase activity, coupled to movement of substances;0.00470283403021529!GO:0006730;one-carbon compound metabolic process;0.00473753149033784!GO:0046489;phosphoinositide biosynthetic process;0.00485109350450048!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00520027368519815!GO:0031072;heat shock protein binding;0.00520865431655769!GO:0030521;androgen receptor signaling pathway;0.00530392957715741!GO:0030384;phosphoinositide metabolic process;0.00542077033839269!GO:0030880;RNA polymerase complex;0.00565280401423573!GO:0031410;cytoplasmic vesicle;0.00568099001410549!GO:0006355;regulation of transcription, DNA-dependent;0.00575965571723402!GO:0006984;ER-nuclear signaling pathway;0.00575965571723402!GO:0008097;5S rRNA binding;0.00584688154964292!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00592616951444006!GO:0015002;heme-copper terminal oxidase activity;0.00592616951444006!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00592616951444006!GO:0004129;cytochrome-c oxidase activity;0.00592616951444006!GO:0065009;regulation of a molecular function;0.00593075844170554!GO:0030131;clathrin adaptor complex;0.00599758731549807!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00610140780084023!GO:0031326;regulation of cellular biosynthetic process;0.00610202659239272!GO:0007265;Ras protein signal transduction;0.00610374524696396!GO:0051101;regulation of DNA binding;0.00620169978724742!GO:0044262;cellular carbohydrate metabolic process;0.00624182077279227!GO:0045947;negative regulation of translational initiation;0.00627703481501049!GO:0000922;spindle pole;0.00627703481501049!GO:0003756;protein disulfide isomerase activity;0.00639866249117027!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00639866249117027!GO:0008610;lipid biosynthetic process;0.0064809631802468!GO:0009165;nucleotide biosynthetic process;0.00652919793547646!GO:0006611;protein export from nucleus;0.00655801491501511!GO:0000096;sulfur amino acid metabolic process;0.00657659266561501!GO:0030134;ER to Golgi transport vesicle;0.00675323970807975!GO:0030663;COPI coated vesicle membrane;0.00692558373670165!GO:0030126;COPI vesicle coat;0.00692558373670165!GO:0003702;RNA polymerase II transcription factor activity;0.00697989355788057!GO:0035258;steroid hormone receptor binding;0.00706764641941994!GO:0017166;vinculin binding;0.00751353760224937!GO:0046483;heterocycle metabolic process;0.00791416791037853!GO:0003711;transcription elongation regulator activity;0.00799436038957198!GO:0007040;lysosome organization and biogenesis;0.00800473083955556!GO:0005758;mitochondrial intermembrane space;0.00808499608640683!GO:0009308;amine metabolic process;0.00815827597091746!GO:0003924;GTPase activity;0.00846792654194792!GO:0009451;RNA modification;0.00848883576873337!GO:0016272;prefoldin complex;0.00856062489310702!GO:0005774;vacuolar membrane;0.00860444210032688!GO:0030132;clathrin coat of coated pit;0.00915217018273101!GO:0000725;recombinational repair;0.00958217563311759!GO:0000724;double-strand break repair via homologous recombination;0.00958217563311759!GO:0009081;branched chain family amino acid metabolic process;0.00961435164423647!GO:0030658;transport vesicle membrane;0.00964827283257848!GO:0043414;biopolymer methylation;0.00980722276307858!GO:0005832;chaperonin-containing T-complex;0.00995160974340888!GO:0000228;nuclear chromosome;0.0101757649286227!GO:0046982;protein heterodimerization activity;0.0106067629985382!GO:0007021;tubulin folding;0.0106149485044486!GO:0006376;mRNA splice site selection;0.0106149485044486!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0106149485044486!GO:0048487;beta-tubulin binding;0.0106149485044486!GO:0043433;negative regulation of transcription factor activity;0.0106636416586236!GO:0040029;regulation of gene expression, epigenetic;0.0109203861678434!GO:0006275;regulation of DNA replication;0.0109330065859857!GO:0031968;organelle outer membrane;0.0110508520351439!GO:0031124;mRNA 3'-end processing;0.0110797730673745!GO:0043022;ribosome binding;0.0114635163797974!GO:0030833;regulation of actin filament polymerization;0.011525344236205!GO:0006807;nitrogen compound metabolic process;0.011603283801764!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0117203306453907!GO:0000428;DNA-directed RNA polymerase complex;0.0117203306453907!GO:0051098;regulation of binding;0.0118527555590895!GO:0015631;tubulin binding;0.0119223023711884!GO:0004518;nuclease activity;0.012018192497332!GO:0006541;glutamine metabolic process;0.0123231644377212!GO:0031570;DNA integrity checkpoint;0.0124865441067946!GO:0005669;transcription factor TFIID complex;0.0126708058373655!GO:0008139;nuclear localization sequence binding;0.0126914547491886!GO:0001725;stress fiber;0.0128237582687128!GO:0032432;actin filament bundle;0.0128237582687128!GO:0008276;protein methyltransferase activity;0.012994789096104!GO:0030127;COPII vesicle coat;0.013070008003863!GO:0012507;ER to Golgi transport vesicle membrane;0.013070008003863!GO:0006518;peptide metabolic process;0.0131831462070916!GO:0046467;membrane lipid biosynthetic process;0.0133337398573985!GO:0007033;vacuole organization and biogenesis;0.0133970447348108!GO:0031902;late endosome membrane;0.0133970447348108!GO:0030137;COPI-coated vesicle;0.0133972761200305!GO:0005741;mitochondrial outer membrane;0.0134807467331847!GO:0006378;mRNA polyadenylation;0.0136816475857259!GO:0005876;spindle microtubule;0.0138118512096162!GO:0004527;exonuclease activity;0.0138278253504531!GO:0051540;metal cluster binding;0.0138278253504531!GO:0051536;iron-sulfur cluster binding;0.0138278253504531!GO:0051539;4 iron, 4 sulfur cluster binding;0.0142331217651818!GO:0030027;lamellipodium;0.0143515819512497!GO:0043596;nuclear replication fork;0.0143515819512497!GO:0019867;outer membrane;0.014414584518783!GO:0000792;heterochromatin;0.0145657010648893!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0147811654103449!GO:0030518;steroid hormone receptor signaling pathway;0.0149937499314642!GO:0006406;mRNA export from nucleus;0.0154195704027155!GO:0016481;negative regulation of transcription;0.0156587269805663!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0158961615542267!GO:0008180;signalosome;0.0164952451238024!GO:0006270;DNA replication initiation;0.0164983585635832!GO:0016126;sterol biosynthetic process;0.0166301243441814!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0178053856637757!GO:0005869;dynactin complex;0.0178337060672216!GO:0007017;microtubule-based process;0.0179262963990423!GO:0030660;Golgi-associated vesicle membrane;0.0187074100336908!GO:0004003;ATP-dependent DNA helicase activity;0.0191057500461488!GO:0008250;oligosaccharyl transferase complex;0.0191452504644491!GO:0051053;negative regulation of DNA metabolic process;0.0194792879643501!GO:0044437;vacuolar part;0.0194792879643501!GO:0032200;telomere organization and biogenesis;0.0197671129780626!GO:0000723;telomere maintenance;0.0197671129780626!GO:0044454;nuclear chromosome part;0.0198399134713972!GO:0000819;sister chromatid segregation;0.0199489794203174!GO:0008320;protein transmembrane transporter activity;0.020229480197788!GO:0031529;ruffle organization and biogenesis;0.020229480197788!GO:0008092;cytoskeletal protein binding;0.0202576500679087!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0207343373663312!GO:0022884;macromolecule transmembrane transporter activity;0.0208012723062589!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0208012723062589!GO:0031970;organelle envelope lumen;0.020981013291531!GO:0006892;post-Golgi vesicle-mediated transport;0.0212855428494997!GO:0043488;regulation of mRNA stability;0.0214277062464588!GO:0043487;regulation of RNA stability;0.0214277062464588!GO:0009889;regulation of biosynthetic process;0.0215213564339882!GO:0016860;intramolecular oxidoreductase activity;0.0215301488039853!GO:0003725;double-stranded RNA binding;0.0217302129397527!GO:0051656;establishment of organelle localization;0.0222907954174087!GO:0004576;oligosaccharyl transferase activity;0.0222907954174087!GO:0009070;serine family amino acid biosynthetic process;0.0224454403438567!GO:0006400;tRNA modification;0.022515383544224!GO:0000097;sulfur amino acid biosynthetic process;0.0226614466884146!GO:0006595;polyamine metabolic process;0.0226614466884146!GO:0008022;protein C-terminus binding;0.0226614466884146!GO:0000793;condensed chromosome;0.0226778189518594!GO:0016491;oxidoreductase activity;0.022739569475453!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0228894971031221!GO:0006144;purine base metabolic process;0.0228920051691182!GO:0000070;mitotic sister chromatid segregation;0.0236103866655994!GO:0042770;DNA damage response, signal transduction;0.0237619384896375!GO:0003923;GPI-anchor transamidase activity;0.023794901431266!GO:0016255;attachment of GPI anchor to protein;0.023794901431266!GO:0042765;GPI-anchor transamidase complex;0.023794901431266!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.023794901431266!GO:0019318;hexose metabolic process;0.0242428852567482!GO:0005996;monosaccharide metabolic process;0.0243491158706818!GO:0048523;negative regulation of cellular process;0.0247966711093767!GO:0006506;GPI anchor biosynthetic process;0.0258589120984879!GO:0000339;RNA cap binding;0.0260048650224072!GO:0006007;glucose catabolic process;0.0264331890254144!GO:0016407;acetyltransferase activity;0.0274361956462557!GO:0031123;RNA 3'-end processing;0.0278329914752609!GO:0006607;NLS-bearing substrate import into nucleus;0.0281383154102387!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0284806758219582!GO:0010257;NADH dehydrogenase complex assembly;0.0284806758219582!GO:0033108;mitochondrial respiratory chain complex assembly;0.0284806758219582!GO:0007050;cell cycle arrest;0.0288984143989873!GO:0000209;protein polyubiquitination;0.0291008088122244!GO:0000910;cytokinesis;0.0292932966882447!GO:0005663;DNA replication factor C complex;0.0294349492160457!GO:0032507;maintenance of cellular protein localization;0.0294349492160457!GO:0045767;regulation of anti-apoptosis;0.0296696769124861!GO:0005784;translocon complex;0.0298975142347012!GO:0005862;muscle thin filament tropomyosin;0.0302316433813019!GO:0043601;nuclear replisome;0.0309309836541877!GO:0030894;replisome;0.0309309836541877!GO:0009303;rRNA transcription;0.031379660244402!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0314510962005179!GO:0016408;C-acyltransferase activity;0.032351097631821!GO:0007569;cell aging;0.032620805676542!GO:0006505;GPI anchor metabolic process;0.0331404757664126!GO:0000152;nuclear ubiquitin ligase complex;0.0337130571306263!GO:0045893;positive regulation of transcription, DNA-dependent;0.0337130571306263!GO:0000118;histone deacetylase complex;0.034394654669754!GO:0031901;early endosome membrane;0.0344232031979303!GO:0065007;biological regulation;0.0352989815659924!GO:0030041;actin filament polymerization;0.0379782442322428!GO:0048037;cofactor binding;0.0381947043579565!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0382593234487442!GO:0008632;apoptotic program;0.0389120624813911!GO:0006497;protein amino acid lipidation;0.0396927369422562!GO:0006740;NADPH regeneration;0.0397522176578453!GO:0006098;pentose-phosphate shunt;0.0397522176578453!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0400312140221989!GO:0035267;NuA4 histone acetyltransferase complex;0.0411776086083647!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0413580817580752!GO:0000781;chromosome, telomeric region;0.0418568832284139!GO:0000790;nuclear chromatin;0.0422578232747391!GO:0047485;protein N-terminus binding;0.0425592799203619!GO:0004448;isocitrate dehydrogenase activity;0.042884554197032!GO:0031625;ubiquitin protein ligase binding;0.0431041258199592!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0434176774060089!GO:0000077;DNA damage checkpoint;0.0434300768905528!GO:0043624;cellular protein complex disassembly;0.043713610901339!GO:0045941;positive regulation of transcription;0.0444574723937404!GO:0042026;protein refolding;0.0446665726501533!GO:0046979;TAP2 binding;0.0455279292701834!GO:0046977;TAP binding;0.0455279292701834!GO:0046978;TAP1 binding;0.0455279292701834!GO:0008637;apoptotic mitochondrial changes;0.0455868439541521!GO:0009066;aspartate family amino acid metabolic process;0.0459039349125684!GO:0006610;ribosomal protein import into nucleus;0.046478297305962!GO:0004523;ribonuclease H activity;0.0467855734245387!GO:0019783;small conjugating protein-specific protease activity;0.0469188138533891!GO:0008538;proteasome activator activity;0.0483932795906754!GO:0005732;small nucleolar ribonucleoprotein complex;0.048551057688802!GO:0005083;small GTPase regulator activity;0.048551057688802!GO:0005652;nuclear lamina;0.0487509314580309!GO:0042158;lipoprotein biosynthetic process;0.0488104433730076!GO:0008287;protein serine/threonine phosphatase complex;0.0488741660820458!GO:0006643;membrane lipid metabolic process;0.0488825658751499!GO:0008286;insulin receptor signaling pathway;0.049113610774502 | |||
|sample_id=10423 | |sample_id=10423 | ||
|sample_note=machine failed, remainder reloaded, low amount | |sample_note=machine failed, remainder reloaded, low amount | ||
| Line 76: | Line 101: | ||
|sample_tissue=placenta | |sample_tissue=placenta | ||
|top_motifs=HOXA9_MEIS1:1.68362556267;VSX1,2:1.60712741817;SNAI1..3:1.55921967283;PITX1..3:1.55696760899;TOPORS:1.36140099143;ZEB1:1.29006208432;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.26623737981;TP53:1.21721558138;NFY{A,B,C}:1.2129282312;FOXQ1:1.2050007364;bHLH_family:1.17658487982;E2F1..5:1.10730114886;ZNF143:1.04013831792;MYOD1:0.918045048901;FOX{F1,F2,J1}:0.844151914402;SP1:0.737033318125;HIF1A:0.734001950361;TEAD1:0.69232354876;ELK1,4_GABP{A,B1}:0.630183736842;HOX{A5,B5}:0.597060863109;RORA:0.588518455426;FOXM1:0.584246155712;IKZF1:0.554805218641;MYB:0.535982941612;ZNF384:0.532794673986;RBPJ:0.53137907223;HOX{A6,A7,B6,B7}:0.502240105942;PAX1,9:0.452786876954;OCT4_SOX2{dimer}:0.445785226151;NKX3-2:0.436072430992;EVI1:0.431075143675;NRF1:0.427446724057;TEF:0.397233469884;XCPE1{core}:0.325417997195;TBX4,5:0.32215515693;GATA6:0.320917223418;AIRE:0.301166842568;GFI1:0.293437691377;CDC5L:0.275012874401;ESRRA:0.273023155096;HNF4A_NR2F1,2:0.226720749195;LMO2:0.217622360757;FOXP1:0.212678274341;NR1H4:0.191512646328;HLF:0.188516844759;CDX1,2,4:0.173642953314;FOXN1:0.155022210486;ONECUT1,2:0.154863572732;POU2F1..3:0.116723247352;FOXO1,3,4:0.110669390793;PRRX1,2:0.0495867869615;STAT5{A,B}:0.0216832953443;HNF1A:0.0147770401348;RFX2..5_RFXANK_RFXAP:0.0139517410675;LHX3,4:-0.0080492769383;UFEwm:-0.0160794966314;SOX{8,9,10}:-0.0216790221902;YY1:-0.0331356627527;NKX2-3_NKX2-5:-0.0417481611854;SPZ1:-0.0480986469491;ZFP161:-0.0500312632069;CEBPA,B_DDIT3:-0.0642037583202;CUX2:-0.0722076105087;SREBF1,2:-0.105882150655;ZNF148:-0.123165104632;KLF4:-0.133039248615;ATF4:-0.141521698573;FOXP3:-0.146604874995;STAT1,3:-0.147330414922;FOXA2:-0.155734842891;ARID5B:-0.157570447191;HOX{A4,D4}:-0.161795816948;BREu{core}:-0.167079058983;XBP1:-0.171713269978;TFAP2{A,C}:-0.182241859969;PBX1:-0.191692395277;CREB1:-0.2233177635;ZNF423:-0.232465138388;MED-1{core}:-0.242693197009;NKX2-1,4:-0.243499237465;TFAP4:-0.244015803159;ZNF238:-0.245506813825;MTF1:-0.252950544324;MYBL2:-0.257895618211;IKZF2:-0.284651866292;SOX17:-0.285243920001;LEF1_TCF7_TCF7L1,2:-0.305743758115;ADNP_IRX_SIX_ZHX:-0.306245465318;NFE2L2:-0.323043230888;ZBTB16:-0.327125575858;POU3F1..4:-0.341095171856;TFDP1:-0.344360623375;FOX{D1,D2}:-0.35248718648;ELF1,2,4:-0.3719566003;ZIC1..3:-0.374877420391;PDX1:-0.379926945347;SRF:-0.388497512846;ALX1:-0.39336629749;FOXD3:-0.42226652347;PAX4:-0.428211815733;NFKB1_REL_RELA:-0.428482970064;SOX2:-0.428836268372;NFE2:-0.434464653899;SPIB:-0.452963533876;POU1F1:-0.457044407579;FOS_FOS{B,L1}_JUN{B,D}:-0.458345410724;EBF1:-0.461693352072;GCM1,2:-0.461712342537;AHR_ARNT_ARNT2:-0.462508531312;PAX5:-0.476315319818;NR3C1:-0.478273719009;BACH2:-0.479739754705;NR5A1,2:-0.483055878977;MEF2{A,B,C,D}:-0.49113742011;NFIX:-0.492345803886;ALX4:-0.503370761839;MAFB:-0.50786598423;PAX8:-0.515530566499;POU6F1:-0.533731280674;STAT2,4,6:-0.538032175027;FOSL2:-0.551137455782;ETS1,2:-0.555673677533;CRX:-0.557247214957;FOXL1:-0.580004423981;ATF5_CREB3:-0.588304464126;TFAP2B:-0.592268950659;GTF2I:-0.597449507671;SPI1:-0.603938915327;POU5F1:-0.606633599509;ZBTB6:-0.61080898193;FOX{I1,J2}:-0.625970121397;RFX1:-0.629422571339;HAND1,2:-0.631044854164;ESR1:-0.631087312845;PAX2:-0.637349452146;RXRA_VDR{dimer}:-0.637587953092;TLX2:-0.641396589373;GFI1B:-0.653663251641;BPTF:-0.677587970544;ATF2:-0.687939520756;MAZ:-0.691787534797;EN1,2:-0.69481497747;PATZ1:-0.6965693226;MYFfamily:-0.69675900093;DMAP1_NCOR{1,2}_SMARC:-0.706136171556;GTF2A1,2:-0.708007456417;RREB1:-0.710821303064;RUNX1..3:-0.735271617069;TAL1_TCF{3,4,12}:-0.756995770086;PAX3,7:-0.76920425398;IRF7:-0.777966713144;TLX1..3_NFIC{dimer}:-0.789322392643;HMGA1,2:-0.790695603862;TGIF1:-0.818051233012;REST:-0.819035092791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.859593794147;NKX6-1,2:-0.867190202252;NHLH1,2:-0.871050218388;TBP:-0.871144000409;IRF1,2:-0.881008544539;JUN:-0.88701455859;GATA4:-0.897956024734;NANOG:-0.901701832136;MTE{core}:-0.904939025367;SOX5:-0.922773793133;PRDM1:-0.939456694616;NFE2L1:-0.945116598586;DBP:-0.971010377637;HES1:-0.983276018297;HIC1:-0.989357710367;PPARG:-1.00213204405;NR6A1:-1.00971921961;RXR{A,B,G}:-1.01759461573;NKX2-2,8:-1.0379444569;HMX1:-1.10982907969;NKX3-1:-1.11334549924;MZF1:-1.12730994039;ATF6:-1.13701813276;AR:-1.15359443376;NANOG{mouse}:-1.2012584969;EGR1..3:-1.2599427833;NFIL3:-1.30608865077;HSF1,2:-1.30779393009;TFCP2:-1.37263267287;GZF1:-1.37821020722;T:-1.4162214088;NFATC1..3:-1.45798212779;HBP1_HMGB_SSRP1_UBTF:-1.48671351036;PAX6:-1.49782847076;SMAD1..7,9:-1.64777505448;EP300:-1.65103242227;GLI1..3:-1.73873122999 | |top_motifs=HOXA9_MEIS1:1.68362556267;VSX1,2:1.60712741817;SNAI1..3:1.55921967283;PITX1..3:1.55696760899;TOPORS:1.36140099143;ZEB1:1.29006208432;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.26623737981;TP53:1.21721558138;NFY{A,B,C}:1.2129282312;FOXQ1:1.2050007364;bHLH_family:1.17658487982;E2F1..5:1.10730114886;ZNF143:1.04013831792;MYOD1:0.918045048901;FOX{F1,F2,J1}:0.844151914402;SP1:0.737033318125;HIF1A:0.734001950361;TEAD1:0.69232354876;ELK1,4_GABP{A,B1}:0.630183736842;HOX{A5,B5}:0.597060863109;RORA:0.588518455426;FOXM1:0.584246155712;IKZF1:0.554805218641;MYB:0.535982941612;ZNF384:0.532794673986;RBPJ:0.53137907223;HOX{A6,A7,B6,B7}:0.502240105942;PAX1,9:0.452786876954;OCT4_SOX2{dimer}:0.445785226151;NKX3-2:0.436072430992;EVI1:0.431075143675;NRF1:0.427446724057;TEF:0.397233469884;XCPE1{core}:0.325417997195;TBX4,5:0.32215515693;GATA6:0.320917223418;AIRE:0.301166842568;GFI1:0.293437691377;CDC5L:0.275012874401;ESRRA:0.273023155096;HNF4A_NR2F1,2:0.226720749195;LMO2:0.217622360757;FOXP1:0.212678274341;NR1H4:0.191512646328;HLF:0.188516844759;CDX1,2,4:0.173642953314;FOXN1:0.155022210486;ONECUT1,2:0.154863572732;POU2F1..3:0.116723247352;FOXO1,3,4:0.110669390793;PRRX1,2:0.0495867869615;STAT5{A,B}:0.0216832953443;HNF1A:0.0147770401348;RFX2..5_RFXANK_RFXAP:0.0139517410675;LHX3,4:-0.0080492769383;UFEwm:-0.0160794966314;SOX{8,9,10}:-0.0216790221902;YY1:-0.0331356627527;NKX2-3_NKX2-5:-0.0417481611854;SPZ1:-0.0480986469491;ZFP161:-0.0500312632069;CEBPA,B_DDIT3:-0.0642037583202;CUX2:-0.0722076105087;SREBF1,2:-0.105882150655;ZNF148:-0.123165104632;KLF4:-0.133039248615;ATF4:-0.141521698573;FOXP3:-0.146604874995;STAT1,3:-0.147330414922;FOXA2:-0.155734842891;ARID5B:-0.157570447191;HOX{A4,D4}:-0.161795816948;BREu{core}:-0.167079058983;XBP1:-0.171713269978;TFAP2{A,C}:-0.182241859969;PBX1:-0.191692395277;CREB1:-0.2233177635;ZNF423:-0.232465138388;MED-1{core}:-0.242693197009;NKX2-1,4:-0.243499237465;TFAP4:-0.244015803159;ZNF238:-0.245506813825;MTF1:-0.252950544324;MYBL2:-0.257895618211;IKZF2:-0.284651866292;SOX17:-0.285243920001;LEF1_TCF7_TCF7L1,2:-0.305743758115;ADNP_IRX_SIX_ZHX:-0.306245465318;NFE2L2:-0.323043230888;ZBTB16:-0.327125575858;POU3F1..4:-0.341095171856;TFDP1:-0.344360623375;FOX{D1,D2}:-0.35248718648;ELF1,2,4:-0.3719566003;ZIC1..3:-0.374877420391;PDX1:-0.379926945347;SRF:-0.388497512846;ALX1:-0.39336629749;FOXD3:-0.42226652347;PAX4:-0.428211815733;NFKB1_REL_RELA:-0.428482970064;SOX2:-0.428836268372;NFE2:-0.434464653899;SPIB:-0.452963533876;POU1F1:-0.457044407579;FOS_FOS{B,L1}_JUN{B,D}:-0.458345410724;EBF1:-0.461693352072;GCM1,2:-0.461712342537;AHR_ARNT_ARNT2:-0.462508531312;PAX5:-0.476315319818;NR3C1:-0.478273719009;BACH2:-0.479739754705;NR5A1,2:-0.483055878977;MEF2{A,B,C,D}:-0.49113742011;NFIX:-0.492345803886;ALX4:-0.503370761839;MAFB:-0.50786598423;PAX8:-0.515530566499;POU6F1:-0.533731280674;STAT2,4,6:-0.538032175027;FOSL2:-0.551137455782;ETS1,2:-0.555673677533;CRX:-0.557247214957;FOXL1:-0.580004423981;ATF5_CREB3:-0.588304464126;TFAP2B:-0.592268950659;GTF2I:-0.597449507671;SPI1:-0.603938915327;POU5F1:-0.606633599509;ZBTB6:-0.61080898193;FOX{I1,J2}:-0.625970121397;RFX1:-0.629422571339;HAND1,2:-0.631044854164;ESR1:-0.631087312845;PAX2:-0.637349452146;RXRA_VDR{dimer}:-0.637587953092;TLX2:-0.641396589373;GFI1B:-0.653663251641;BPTF:-0.677587970544;ATF2:-0.687939520756;MAZ:-0.691787534797;EN1,2:-0.69481497747;PATZ1:-0.6965693226;MYFfamily:-0.69675900093;DMAP1_NCOR{1,2}_SMARC:-0.706136171556;GTF2A1,2:-0.708007456417;RREB1:-0.710821303064;RUNX1..3:-0.735271617069;TAL1_TCF{3,4,12}:-0.756995770086;PAX3,7:-0.76920425398;IRF7:-0.777966713144;TLX1..3_NFIC{dimer}:-0.789322392643;HMGA1,2:-0.790695603862;TGIF1:-0.818051233012;REST:-0.819035092791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.859593794147;NKX6-1,2:-0.867190202252;NHLH1,2:-0.871050218388;TBP:-0.871144000409;IRF1,2:-0.881008544539;JUN:-0.88701455859;GATA4:-0.897956024734;NANOG:-0.901701832136;MTE{core}:-0.904939025367;SOX5:-0.922773793133;PRDM1:-0.939456694616;NFE2L1:-0.945116598586;DBP:-0.971010377637;HES1:-0.983276018297;HIC1:-0.989357710367;PPARG:-1.00213204405;NR6A1:-1.00971921961;RXR{A,B,G}:-1.01759461573;NKX2-2,8:-1.0379444569;HMX1:-1.10982907969;NKX3-1:-1.11334549924;MZF1:-1.12730994039;ATF6:-1.13701813276;AR:-1.15359443376;NANOG{mouse}:-1.2012584969;EGR1..3:-1.2599427833;NFIL3:-1.30608865077;HSF1,2:-1.30779393009;TFCP2:-1.37263267287;GZF1:-1.37821020722;T:-1.4162214088;NFATC1..3:-1.45798212779;HBP1_HMGB_SSRP1_UBTF:-1.48671351036;PAX6:-1.49782847076;SMAD1..7,9:-1.64777505448;EP300:-1.65103242227;GLI1..3:-1.73873122999 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10423-106C9;search_select_hide=table117:FF:10423-106C9 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | choriocarcinoma cell line:BeWo |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10740 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10740
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10740
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.458 |
| 10 | 10 | 0.661 |
| 100 | 100 | 0.0392 |
| 101 | 101 | 0.346 |
| 102 | 102 | 0.0646 |
| 103 | 103 | 0.103 |
| 104 | 104 | 0.111 |
| 105 | 105 | 0.741 |
| 106 | 106 | 0.338 |
| 107 | 107 | 0.685 |
| 108 | 108 | 0.506 |
| 109 | 109 | 0.0743 |
| 11 | 11 | 0.696 |
| 110 | 110 | 0.335 |
| 111 | 111 | 0.814 |
| 112 | 112 | 0.381 |
| 113 | 113 | 0.0144 |
| 114 | 114 | 0.268 |
| 115 | 115 | 0.816 |
| 116 | 116 | 0.636 |
| 117 | 117 | 0.0184 |
| 118 | 118 | 0.23 |
| 119 | 119 | 0.796 |
| 12 | 12 | 0.95 |
| 120 | 120 | 0.689 |
| 121 | 121 | 0.635 |
| 122 | 122 | 0.886 |
| 123 | 123 | 0.36 |
| 124 | 124 | 0.978 |
| 125 | 125 | 0.867 |
| 126 | 126 | 0.718 |
| 127 | 127 | 0.407 |
| 128 | 128 | 0.512 |
| 129 | 129 | 0.903 |
| 13 | 13 | 7.14923e-5 |
| 130 | 130 | 0.343 |
| 131 | 131 | 0.182 |
| 132 | 132 | 0.952 |
| 133 | 133 | 2.25913e-4 |
| 134 | 134 | 0.931 |
| 135 | 135 | 0.262 |
| 136 | 136 | 0.00486 |
| 137 | 137 | 0.11 |
| 138 | 138 | 0.967 |
| 139 | 139 | 0.373 |
| 14 | 14 | 0.912 |
| 140 | 140 | 0.257 |
| 141 | 141 | 0.171 |
| 142 | 142 | 0.872 |
| 143 | 143 | 0.0416 |
| 144 | 144 | 0.0474 |
| 145 | 145 | 0.389 |
| 146 | 146 | 0.795 |
| 147 | 147 | 0.212 |
| 148 | 148 | 0.22 |
| 149 | 149 | 0.782 |
| 15 | 15 | 0.715 |
| 150 | 150 | 0.943 |
| 151 | 151 | 0.536 |
| 152 | 152 | 0.887 |
| 153 | 153 | 0.5 |
| 154 | 154 | 0.742 |
| 155 | 155 | 0.103 |
| 156 | 156 | 0.376 |
| 157 | 157 | 0.814 |
| 158 | 158 | 0.77 |
| 159 | 159 | 0.786 |
| 16 | 16 | 0.489 |
| 160 | 160 | 0.73 |
| 161 | 161 | 0.283 |
| 162 | 162 | 0.0618 |
| 163 | 163 | 0.266 |
| 164 | 164 | 0.645 |
| 165 | 165 | 0.652 |
| 166 | 166 | 0.0115 |
| 167 | 167 | 0.86 |
| 168 | 168 | 0.286 |
| 169 | 169 | 0.196 |
| 17 | 17 | 0.596 |
| 18 | 18 | 0.749 |
| 19 | 19 | 0.428 |
| 2 | 2 | 0.871 |
| 20 | 20 | 0.748 |
| 21 | 21 | 0.524 |
| 22 | 22 | 0.573 |
| 23 | 23 | 0.439 |
| 24 | 24 | 0.292 |
| 25 | 25 | 0.483 |
| 26 | 26 | 0.415 |
| 27 | 27 | 0.932 |
| 28 | 28 | 0.661 |
| 29 | 29 | 0.298 |
| 3 | 3 | 0.563 |
| 30 | 30 | 0.948 |
| 31 | 31 | 0.92 |
| 32 | 32 | 0.17 |
| 33 | 33 | 0.342 |
| 34 | 34 | 0.524 |
| 35 | 35 | 0.663 |
| 36 | 36 | 0.313 |
| 37 | 37 | 0.488 |
| 38 | 38 | 0.756 |
| 39 | 39 | 0.264 |
| 4 | 4 | 0.624 |
| 40 | 40 | 0.0178 |
| 41 | 41 | 0.0707 |
| 42 | 42 | 0.443 |
| 43 | 43 | 0.816 |
| 44 | 44 | 0.298 |
| 45 | 45 | 0.439 |
| 46 | 46 | 0.954 |
| 47 | 47 | 0.0986 |
| 48 | 48 | 0.219 |
| 49 | 49 | 0.871 |
| 5 | 5 | 0.298 |
| 50 | 50 | 0.311 |
| 51 | 51 | 0.851 |
| 52 | 52 | 0.82 |
| 53 | 53 | 0.339 |
| 54 | 54 | 0.872 |
| 55 | 55 | 0.684 |
| 56 | 56 | 0.883 |
| 57 | 57 | 0.0857 |
| 58 | 58 | 0.466 |
| 59 | 59 | 0.79 |
| 6 | 6 | 0.622 |
| 60 | 60 | 0.748 |
| 61 | 61 | 0.385 |
| 62 | 62 | 0.513 |
| 63 | 63 | 0.801 |
| 64 | 64 | 0.774 |
| 65 | 65 | 0.802 |
| 66 | 66 | 0.00372 |
| 67 | 67 | 0.857 |
| 68 | 68 | 0.0293 |
| 69 | 69 | 0.479 |
| 7 | 7 | 0.138 |
| 70 | 70 | 0.211 |
| 71 | 71 | 0.442 |
| 72 | 72 | 0.893 |
| 73 | 73 | 0.912 |
| 74 | 74 | 0.41 |
| 75 | 75 | 0.0673 |
| 76 | 76 | 0.802 |
| 77 | 77 | 0.613 |
| 78 | 78 | 0.00171 |
| 79 | 79 | 0.247 |
| 8 | 8 | 0.766 |
| 80 | 80 | 0.021 |
| 81 | 81 | 0.967 |
| 82 | 82 | 0.824 |
| 83 | 83 | 0.785 |
| 84 | 84 | 0.675 |
| 85 | 85 | 0.423 |
| 86 | 86 | 0.533 |
| 87 | 87 | 0.024 |
| 88 | 88 | 0.73 |
| 89 | 89 | 0.0772 |
| 9 | 9 | 0.177 |
| 90 | 90 | 0.775 |
| 91 | 91 | 0.0614 |
| 92 | 92 | 0.776 |
| 93 | 93 | 0.644 |
| 94 | 94 | 0.364 |
| 95 | 95 | 0.0112 |
| 96 | 96 | 0.515 |
| 97 | 97 | 0.825 |
| 98 | 98 | 0.741 |
| 99 | 99 | 0.3 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10740
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100798 BeWo cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)
0100798 (BeWo cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
