FF:10167-103B5: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	amygdala - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13793
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	amygdala
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005514

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13793		CAGE		DRX008617		DRR009489

Accession ID Hg19

Library id		BAM		CTSS
CNhs13793		DRZ000914		DRZ002299

Accession ID Hg38

Library id		BAM		CTSS
CNhs13793		DRZ012264		DRZ013649

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.466
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.735
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.354
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0462
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.475
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.3
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.3
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.742
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.84
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.843
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.843
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.6
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.475
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.199
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.697
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.809
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.3
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.697
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.6
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.697
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.3
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.3
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.475
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13793

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.043
MA0003.1	MA0003.1	0.331
MA0004.1	MA0004.1	0.269
MA0006.1	MA0006.1	0.212
MA0007.1	MA0007.1	0.247
MA0009.1	MA0009.1	0.338
MA0014.1	MA0014.1	0.536
MA0017.1	MA0017.1	0.00695
MA0018.2	MA0018.2	0.13
MA0019.1	MA0019.1	0.623
MA0024.1	MA0024.1	0.459
MA0025.1	MA0025.1	0.668
MA0027.1	MA0027.1	0.357
MA0028.1	MA0028.1	0.0199
MA0029.1	MA0029.1	0.0864
MA0030.1	MA0030.1	0.659
MA0031.1	MA0031.1	0.496
MA0035.2	MA0035.2	0.0125
MA0038.1	MA0038.1	0.592
MA0039.2	MA0039.2	0.0557
MA0040.1	MA0040.1	0.535
MA0041.1	MA0041.1	0.974
MA0042.1	MA0042.1	0.974
MA0043.1	MA0043.1	0.785
MA0046.1	MA0046.1	0.0076
MA0047.2	MA0047.2	0.0391
MA0048.1	MA0048.1	0.0844
MA0050.1	MA0050.1	1.38879e-4
MA0051.1	MA0051.1	0.00316
MA0052.1	MA0052.1	0.523
MA0055.1	MA0055.1	0.00131
MA0057.1	MA0057.1	0.978
MA0058.1	MA0058.1	0.155
MA0059.1	MA0059.1	0.0971
MA0060.1	MA0060.1	0.658
MA0061.1	MA0061.1	0.0113
MA0062.2	MA0062.2	1.53352e-4
MA0065.2	MA0065.2	0.00161
MA0066.1	MA0066.1	0.0727
MA0067.1	MA0067.1	0.699
MA0068.1	MA0068.1	0.528
MA0069.1	MA0069.1	0.561
MA0070.1	MA0070.1	0.75
MA0071.1	MA0071.1	0.0292
MA0072.1	MA0072.1	0.243
MA0073.1	MA0073.1	0.323
MA0074.1	MA0074.1	0.154
MA0076.1	MA0076.1	0.051
MA0077.1	MA0077.1	0.89
MA0078.1	MA0078.1	0.775
MA0079.2	MA0079.2	0.957
MA0080.2	MA0080.2	1.62532e-9
MA0081.1	MA0081.1	0.0285
MA0083.1	MA0083.1	0.0415
MA0084.1	MA0084.1	0.801
MA0087.1	MA0087.1	0.578
MA0088.1	MA0088.1	0.148
MA0090.1	MA0090.1	0.277
MA0091.1	MA0091.1	0.855
MA0092.1	MA0092.1	0.486
MA0093.1	MA0093.1	0.247
MA0099.2	MA0099.2	5.1366e-18
MA0100.1	MA0100.1	0.581
MA0101.1	MA0101.1	0.00179
MA0102.2	MA0102.2	0.225
MA0103.1	MA0103.1	0.334
MA0104.2	MA0104.2	0.566
MA0105.1	MA0105.1	0.0114
MA0106.1	MA0106.1	0.0282
MA0107.1	MA0107.1	0.00354
MA0108.2	MA0108.2	0.763
MA0111.1	MA0111.1	0.495
MA0112.2	MA0112.2	0.00169
MA0113.1	MA0113.1	0.625
MA0114.1	MA0114.1	0.00282
MA0115.1	MA0115.1	0.582
MA0116.1	MA0116.1	0.0243
MA0117.1	MA0117.1	0.961
MA0119.1	MA0119.1	0.1
MA0122.1	MA0122.1	0.566
MA0124.1	MA0124.1	0.709
MA0125.1	MA0125.1	0.41
MA0131.1	MA0131.1	0.831
MA0135.1	MA0135.1	0.0328
MA0136.1	MA0136.1	3.58508e-14
MA0137.2	MA0137.2	0.778
MA0138.2	MA0138.2	0.144
MA0139.1	MA0139.1	0.424
MA0140.1	MA0140.1	5.23344e-4
MA0141.1	MA0141.1	0.0124
MA0142.1	MA0142.1	0.444
MA0143.1	MA0143.1	0.558
MA0144.1	MA0144.1	0.306
MA0145.1	MA0145.1	0.188
MA0146.1	MA0146.1	0.00339
MA0147.1	MA0147.1	0.463
MA0148.1	MA0148.1	0.0163
MA0149.1	MA0149.1	0.0382
MA0150.1	MA0150.1	1.55277e-4
MA0152.1	MA0152.1	0.539
MA0153.1	MA0153.1	0.351
MA0154.1	MA0154.1	0.0977
MA0155.1	MA0155.1	0.549
MA0156.1	MA0156.1	1.93248e-10
MA0157.1	MA0157.1	0.418
MA0159.1	MA0159.1	0.0143
MA0160.1	MA0160.1	0.00934
MA0162.1	MA0162.1	0.127
MA0163.1	MA0163.1	2.48495e-4
MA0164.1	MA0164.1	0.867
MA0258.1	MA0258.1	0.0121
MA0259.1	MA0259.1	0.919

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13793

Novel motif	Logo	P-value
1	1	0.0751
10	10	0.0333
100	100	0.257
101	101	0.279
102	102	0.756
103	103	0.19
104	104	0.121
105	105	0.144
106	106	0.034
107	107	0.102
108	108	0.853
109	109	0.00233
11	11	0.015
110	110	0.0603
111	111	0.383
112	112	0.495
113	113	0.443
114	114	0.464
115	115	0.88
116	116	0.123
117	117	0.0059
118	118	0.122
119	119	0.196
12	12	0.506
120	120	0.256
121	121	0.348
122	122	0.652
123	123	0.829
124	124	0.0164
125	125	0.512
126	126	0.0295
127	127	0.451
128	128	0.22
129	129	0.594
13	13	3.23748e-4
130	130	0.0758
131	131	0.0772
132	132	0.591
133	133	0.00155
134	134	0.579
135	135	0.115
136	136	7.11523e-4
137	137	0.781
138	138	0.853
139	139	0.309
14	14	0.811
140	140	0.407
141	141	0.586
142	142	0.749
143	143	0.106
144	144	0.81
145	145	0.141
146	146	0.292
147	147	0.741
148	148	0.476
149	149	0.242
15	15	0.0949
150	150	0.14
151	151	0.532
152	152	0.0442
153	153	0.848
154	154	0.343
155	155	0.623
156	156	0.816
157	157	0.408
158	158	0.435
159	159	0.0474
16	16	0.0769
160	160	0.321
161	161	0.198
162	162	0.968
163	163	0.46
164	164	0.0256
165	165	0.0332
166	166	0.424
167	167	0.799
168	168	0.45
169	169	0.0138
17	17	0.122
18	18	0.229
19	19	0.172
2	2	0.795
20	20	0.0907
21	21	0.0715
22	22	0.143
23	23	0.5
24	24	0.0243
25	25	0.507
26	26	1.20523e-5
27	27	0.863
28	28	0.685
29	29	0.0149
3	3	0.0351
30	30	0.819
31	31	0.882
32	32	0.0355
33	33	0.0583
34	34	0.559
35	35	0.775
36	36	0.215
37	37	0.0376
38	38	0.425
39	39	0.208
4	4	0.873
40	40	0.0387
41	41	0.516
42	42	0.212
43	43	0.0955
44	44	0.272
45	45	0.671
46	46	0.131
47	47	0.0967
48	48	0.0399
49	49	0.183
5	5	0.549
50	50	0.151
51	51	0.491
52	52	0.46
53	53	0.862
54	54	0.336
55	55	0.353
56	56	0.409
57	57	0.332
58	58	0.436
59	59	0.069
6	6	0.846
60	60	0.0384
61	61	0.0411
62	62	0.364
63	63	0.134
64	64	0.305
65	65	0.356
66	66	0.096
67	67	0.242
68	68	0.0652
69	69	0.539
7	7	0.0278
70	70	0.136
71	71	0.00969
72	72	0.298
73	73	0.0176
74	74	0.801
75	75	0.021
76	76	0.438
77	77	0.164
78	78	0.00124
79	79	0.388
8	8	0.0956
80	80	0.577
81	81	0.881
82	82	0.694
83	83	0.0106
84	84	0.399
85	85	0.285
86	86	0.143
87	87	1.61448e-4
88	88	0.748
89	89	0.954
9	9	0.398
90	90	0.0669
91	91	0.769
92	92	0.988
93	93	0.649
94	94	0.395
95	95	0.0117
96	96	0.996
97	97	0.689
98	98	0.533
99	99	0.617

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13793

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010151 human amygdala - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008509
+|DRA_sample_Accession=CAGE@SAMD00005514
+|accession_numbers=CAGE;DRX008617;DRR009489;DRZ000914;DRZ002299;DRZ012264;DRZ013649
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!277.37!HOPX;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.69!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.25!176.96!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!165.03!PEG3;;chr15:80733570..80733659,+!p2@ARNT2!2.10!124.27!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!2.09!302.22!ZNF483;;chr2:2334997..2335053,-!p1@MYT1L!1.94!86.49!MYT1L;;chr17:53342311..53342400,+!p1@HLF!1.89!87.48!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.85!70.58!FOXG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.80!62.63!SMARCE1;;chr22:38380543..38380569,-!p1@SOX10!1.78!58.65!SOX10;;chr5:88178983..88179012,-!p1@MEF2C!1.77!425.50!MEF2C;;chrX:85969626..85969664,+!p1@DACH2!1.75!54.68!DACH2;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.68!OLIG1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.60!PRDM8;;chr10:48355030..48355090,+!p1@ZNF488!1.71!64.62!ZNF488;;chr2:162272785..162272836,+!p1@TBR1!1.71!50.70!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.71!NEUROD2;;chrX:25034067..25034088,-!p1@ARX!1.70!48.71!ARX;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.73!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.64!42.75!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.75!NEUROD6;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.50!C11orf9;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.65!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.77!ARNT2;;chr12:106976678..106976708,+!p2@RFX4!1.59!37.78!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.58!36.78!EMX2;;chr21:34398234..34398250,+!p1@OLIG2!1.57!35.79!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.80!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.53!39.77!ZNF365;;chr19:57352109..57352153,-!p2@ZIM2!1.53!32.81!ZIM2;;chr18:53070846..53070902,-!p6@TCF4!1.53!32.81!TCF4;;chr9:126774018..126774055,+!p1@LHX2!1.53!32.81!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.53!32.81!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.81!KCNIP3;;chr7:63505799..63505904,+!p1@ZNF727!1.52!31.81!ZNF727;;chr2:60781201..60781258,-!p3@BCL11A!1.50!30.82!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!114.33!MEF2C;;chr11:8102846..8102892,+!p1@TUB!1.47!39.77!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.44!26.84!HIF3A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.43!25.85!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.43!25.85!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!1.43!25.85!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.41!283.33!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!32.81!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.41!27.84!RORB;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.86!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.87!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.87!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.83!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.78!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.34!20.88!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!23.86!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.32!22.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.32!19.88!ZNF365;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.88!ZNF238;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.87!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.28!179.94!SOX9;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.84!ZNF540;;chr8:53322304..53322340,-!p1@ST18!1.28!17.89!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.86!PROX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.25!16.90!PKNOX2;;chr16:1031762..1031781,+!p1@SOX8!1.23!15.91!SOX8;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.91!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.91!NKRF;;chr3:24536253..24536328,-!p1@THRB!1.20!27.84!THRB;;chr6:19837592..19837621,+!p1@ID4!1.19!88.48!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.70!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.19!20.88!ZBTB16;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.82!SOX15;;chr2:73520667..73520683,-!p1@EGR4!1.17!13.92!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.92!HOPX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.92!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.17!13.92!ASCL1;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.87!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.14!15.91!DPF1;;chr14:58797974..58798011,+!p3@ARID4A!1.14!12.92!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.14!12.92!TEF;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.92!SMARCA2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.93!ZSCAN1;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.93!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.93!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.11!11.93!ASCL1;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.90!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.09!14.91!SOX18;;chr1:61548069..61548102,+!p3@NFIA!1.08!26.84!NFIA;;chr5:88179230..88179270,-!p4@MEF2C!1.08!21.87!MEF2C;;chr8:93107451..93107468,-!p2@RUNX1T1!1.08!10.94!RUNX1T1;;chr14:29234870..29234930,+!p7@FOXG1!1.08!10.94!FOXG1;;chr14:2923700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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10167-103B5
 |is_a=EFO:0002091;;FF:0010151
 |is_obsolete=
-|library_ids=CNhs13793
+|library_id=CNhs13793
+|library_id_phase_based=2:CNhs13793
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10167
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10167
 |name=amygdala - adult, donor10196
 |namespace=FANTOM5
@@ Line 50: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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@@ Line 87: / Line 101: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10167-103B5;search_select_hide=table117:FF:10167-103B5
-|DRA_sample_Accession=CAGE@DRS008509
-|accession_numbers=DRX008617;DRR009489;DRZ000914;DRZ002299;CAGE
-|library_id=CNhs13793
 }}

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Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0