FF:10164-103B2: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005372 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10035;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008630;DRR009502;DRZ000927;DRZ002312;DRZ012277;DRZ013662 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10164-103B2 | |id=FF:10164-103B2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010164 | ||
|is_obsolete= | |||
|library_id=CNhs12321 | |||
|library_id_phase_based=2:CNhs12321 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10164 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10164 | |||
|name=caudate nucleus, adult, donor10252 | |name=caudate nucleus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10035,,, | |profile_cagescan=NCig10035,,, | ||
|profile_hcage=CNhs12321,LSID913,release011,COMPLETED | |profile_hcage=CNhs12321,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=34.25775 | |rna_weight_ug=34.25775 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.96527265977676e-268!GO:0005737;cytoplasm;3.48143081146882e-157!GO:0043226;organelle;5.59466328844819e-105!GO:0043229;intracellular organelle;2.19097773941664e-104!GO:0044444;cytoplasmic part;1.33927435065408e-99!GO:0043227;membrane-bound organelle;2.66563622024447e-98!GO:0043231;intracellular membrane-bound organelle;5.0735964660083e-98!GO:0005515;protein binding;1.25941401054119e-70!GO:0044422;organelle part;2.13810554182832e-67!GO:0044446;intracellular organelle part;2.60518064889949e-66!GO:0032991;macromolecular complex;4.39279397446725e-63!GO:0016043;cellular component organization and biogenesis;1.92680725239599e-47!GO:0030529;ribonucleoprotein complex;8.51012613622417e-44!GO:0005739;mitochondrion;1.96658249404772e-43!GO:0003723;RNA binding;3.41972442407115e-40!GO:0033036;macromolecule localization;1.12036035464509e-36!GO:0015031;protein transport;1.59920462245065e-35!GO:0031090;organelle membrane;2.68045624665967e-35!GO:0043234;protein complex;1.14723043945767e-34!GO:0043233;organelle lumen;7.90316347911682e-34!GO:0031974;membrane-enclosed lumen;7.90316347911682e-34!GO:0008104;protein localization;4.14162737335508e-33!GO:0045184;establishment of protein localization;7.62976044708638e-33!GO:0044428;nuclear part;7.05544021932164e-32!GO:0044429;mitochondrial part;5.10782930188473e-31!GO:0046907;intracellular transport;8.8134291288118e-31!GO:0044238;primary metabolic process;8.24078478355384e-29!GO:0051649;establishment of cellular localization;4.80619398198869e-28!GO:0051641;cellular localization;1.95646352191397e-27!GO:0044237;cellular metabolic process;7.73644197148338e-27!GO:0043170;macromolecule metabolic process;9.70259835467147e-27!GO:0031975;envelope;2.43079573530593e-26!GO:0016071;mRNA metabolic process;2.57077517455928e-26!GO:0005829;cytosol;2.63679262431962e-26!GO:0031967;organelle envelope;3.3086197672348e-26!GO:0019538;protein metabolic process;8.82688928066696e-26!GO:0005634;nucleus;1.21686449182811e-25!GO:0006396;RNA processing;8.06502079534358e-25!GO:0005840;ribosome;1.37544099944624e-24!GO:0016192;vesicle-mediated transport;3.36983029547321e-24!GO:0008380;RNA splicing;8.05727320972878e-24!GO:0044260;cellular macromolecule metabolic process;5.21392554344232e-22!GO:0006886;intracellular protein transport;5.52014981129591e-22!GO:0005740;mitochondrial envelope;1.32573130638805e-21!GO:0044267;cellular protein metabolic process;1.82653561095751e-21!GO:0031966;mitochondrial membrane;2.7766652636015e-21!GO:0006397;mRNA processing;5.11087880879963e-21!GO:0006119;oxidative phosphorylation;7.971947578512e-21!GO:0006996;organelle organization and biogenesis;9.2262302627184e-20!GO:0031981;nuclear lumen;1.00485457734688e-19!GO:0019866;organelle inner membrane;2.60485876117276e-19!GO:0003735;structural constituent of ribosome;2.87593598154555e-19!GO:0006412;translation;6.13354864793414e-19!GO:0005743;mitochondrial inner membrane;1.03869726656467e-18!GO:0005794;Golgi apparatus;1.2541794143335e-18!GO:0000166;nucleotide binding;6.40276328091621e-18!GO:0065003;macromolecular complex assembly;7.78290953131501e-18!GO:0033279;ribosomal subunit;1.03562078740154e-16!GO:0005681;spliceosome;1.81942860128068e-16!GO:0044455;mitochondrial membrane part;6.39492908264131e-16!GO:0043283;biopolymer metabolic process;7.09250545334893e-16!GO:0031982;vesicle;1.77730954476518e-15!GO:0022607;cellular component assembly;1.92095914869375e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.36040755276901e-15!GO:0006512;ubiquitin cycle;4.91044926342533e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;4.91044926342533e-15!GO:0016462;pyrophosphatase activity;5.99838930824222e-15!GO:0005746;mitochondrial respiratory chain;6.17181522374557e-15!GO:0031988;membrane-bound vesicle;1.13461902858472e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.13461902858472e-14!GO:0031410;cytoplasmic vesicle;1.15231180561932e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.5440768157909e-14!GO:0003954;NADH dehydrogenase activity;1.5440768157909e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.5440768157909e-14!GO:0009058;biosynthetic process;2.58680710182653e-14!GO:0017111;nucleoside-triphosphatase activity;4.80610839680855e-14!GO:0043687;post-translational protein modification;6.72318968711619e-14!GO:0043412;biopolymer modification;6.93735174869837e-14!GO:0016023;cytoplasmic membrane-bound vesicle;7.16655207599036e-14!GO:0044249;cellular biosynthetic process;7.2445291091133e-14!GO:0006457;protein folding;2.01361244735732e-13!GO:0032553;ribonucleotide binding;2.75408927042187e-13!GO:0032555;purine ribonucleotide binding;2.75408927042187e-13!GO:0006464;protein modification process;4.22314109273995e-13!GO:0016874;ligase activity;5.67800671931227e-13!GO:0005654;nucleoplasm;1.23971237928105e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.46890087217999e-12!GO:0045271;respiratory chain complex I;1.46890087217999e-12!GO:0005747;mitochondrial respiratory chain complex I;1.46890087217999e-12!GO:0009059;macromolecule biosynthetic process;1.663956838919e-12!GO:0017076;purine nucleotide binding;1.67839752442915e-12!GO:0044445;cytosolic part;2.78004729232387e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.11185775556807e-12!GO:0042773;ATP synthesis coupled electron transport;3.11185775556807e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.39255074679119e-12!GO:0012505;endomembrane system;3.4929692279264e-12!GO:0031980;mitochondrial lumen;3.69506000147304e-12!GO:0005759;mitochondrial matrix;3.69506000147304e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.77899357491248e-12!GO:0045045;secretory pathway;5.24648867276258e-12!GO:0010467;gene expression;5.54973161921419e-12!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.29470093009651e-12!GO:0043228;non-membrane-bound organelle;1.00943286612624e-11!GO:0043232;intracellular non-membrane-bound organelle;1.00943286612624e-11!GO:0044451;nucleoplasm part;2.03323611180683e-11!GO:0007264;small GTPase mediated signal transduction;2.49760070090309e-11!GO:0048193;Golgi vesicle transport;3.93059014447624e-11!GO:0048770;pigment granule;4.10981720836606e-11!GO:0042470;melanosome;4.10981720836606e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;7.75239142061056e-11!GO:0006511;ubiquitin-dependent protein catabolic process;8.15924515251252e-11!GO:0006793;phosphorus metabolic process;1.0924450318112e-10!GO:0006796;phosphate metabolic process;1.0924450318112e-10!GO:0030695;GTPase regulator activity;1.0924450318112e-10!GO:0019941;modification-dependent protein catabolic process;1.13224643265519e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.13224643265519e-10!GO:0051082;unfolded protein binding;1.68502878748612e-10!GO:0008134;transcription factor binding;1.90631315195001e-10!GO:0044257;cellular protein catabolic process;1.92810012864298e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.12224082768624e-10!GO:0044265;cellular macromolecule catabolic process;3.01748696596947e-10!GO:0006605;protein targeting;3.25385960103214e-10!GO:0022618;protein-RNA complex assembly;6.19524203917202e-10!GO:0003924;GTPase activity;6.67125460325446e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.38165503325818e-10!GO:0019829;cation-transporting ATPase activity;9.76357414605905e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.24904844940969e-09!GO:0015935;small ribosomal subunit;1.52608742879695e-09!GO:0043285;biopolymer catabolic process;3.99285222821455e-09!GO:0008135;translation factor activity, nucleic acid binding;4.14095043664316e-09!GO:0044248;cellular catabolic process;8.62684500352442e-09!GO:0005525;GTP binding;9.71343918318143e-09!GO:0016044;membrane organization and biogenesis;1.00590217687566e-08!GO:0008565;protein transporter activity;1.08359232823983e-08!GO:0005768;endosome;1.25533054162943e-08!GO:0006461;protein complex assembly;1.34688429446758e-08!GO:0008092;cytoskeletal protein binding;1.5639128659862e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.83797531037554e-08!GO:0008639;small protein conjugating enzyme activity;2.69898028379583e-08!GO:0032940;secretion by cell;2.73193496445212e-08!GO:0030135;coated vesicle;2.89603260874467e-08!GO:0030163;protein catabolic process;2.96683162532006e-08!GO:0044431;Golgi apparatus part;3.06224862547837e-08!GO:0005083;small GTPase regulator activity;3.37102465777892e-08!GO:0004842;ubiquitin-protein ligase activity;3.91346787215541e-08!GO:0016310;phosphorylation;3.94252349916049e-08!GO:0015934;large ribosomal subunit;3.96425427265985e-08!GO:0016604;nuclear body;4.29478827138795e-08!GO:0015986;ATP synthesis coupled proton transport;7.8343248400502e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.8343248400502e-08!GO:0009057;macromolecule catabolic process;8.10634425153605e-08!GO:0019787;small conjugating protein ligase activity;9.08316682344642e-08!GO:0051186;cofactor metabolic process;1.02094968697808e-07!GO:0032559;adenyl ribonucleotide binding;1.11570043464235e-07!GO:0007010;cytoskeleton organization and biogenesis;1.15834326073969e-07!GO:0032561;guanyl ribonucleotide binding;1.47232620736672e-07!GO:0019001;guanyl nucleotide binding;1.47232620736672e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.6274044525331e-07!GO:0000375;RNA splicing, via transesterification reactions;1.6274044525331e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.6274044525331e-07!GO:0005783;endoplasmic reticulum;1.97740441589378e-07!GO:0016607;nuclear speck;1.98396576990992e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.13514395605246e-07!GO:0007242;intracellular signaling cascade;2.26104469695918e-07!GO:0006913;nucleocytoplasmic transport;2.26104469695918e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.50662027110057e-07!GO:0006810;transport;3.31060422029013e-07!GO:0051169;nuclear transport;3.43266968705842e-07!GO:0006446;regulation of translational initiation;3.47032396864109e-07!GO:0005524;ATP binding;4.09461162887608e-07!GO:0005761;mitochondrial ribosome;4.09461162887608e-07!GO:0000313;organellar ribosome;4.09461162887608e-07!GO:0015630;microtubule cytoskeleton;4.10638348584959e-07!GO:0030554;adenyl nucleotide binding;5.3311562594505e-07!GO:0009060;aerobic respiration;7.36738189599122e-07!GO:0005730;nucleolus;7.71308480152103e-07!GO:0048523;negative regulation of cellular process;7.91072604692445e-07!GO:0016881;acid-amino acid ligase activity;8.37710563856079e-07!GO:0019899;enzyme binding;9.49661176194657e-07!GO:0046034;ATP metabolic process;1.21985734398128e-06!GO:0043005;neuron projection;1.29224622813569e-06!GO:0045333;cellular respiration;1.3618223903198e-06!GO:0009141;nucleoside triphosphate metabolic process;1.45128023538375e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.53983976196276e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.63545446599967e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.63545446599967e-06!GO:0007399;nervous system development;1.83086243888207e-06!GO:0031252;leading edge;1.89591669813518e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.97966901824219e-06!GO:0048471;perinuclear region of cytoplasm;2.1836232375562e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.20555308737702e-06!GO:0003743;translation initiation factor activity;2.22546882894617e-06!GO:0009055;electron carrier activity;2.3321226622541e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.33317806132516e-06!GO:0044440;endosomal part;2.39940547886126e-06!GO:0010008;endosome membrane;2.39940547886126e-06!GO:0006163;purine nucleotide metabolic process;2.42880900956033e-06!GO:0006413;translational initiation;2.5523164327084e-06!GO:0006754;ATP biosynthetic process;2.65843669480011e-06!GO:0006753;nucleoside phosphate metabolic process;2.65843669480011e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.69032166099951e-06!GO:0031965;nuclear membrane;2.91079461593527e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.09786094548081e-06!GO:0030029;actin filament-based process;3.17771777962782e-06!GO:0009150;purine ribonucleotide metabolic process;3.48915536526244e-06!GO:0006164;purine nucleotide biosynthetic process;3.71581007323043e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.05339328613592e-06!GO:0000139;Golgi membrane;4.11159021220914e-06!GO:0051179;localization;4.36031036466055e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.69267012378032e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.69267012378032e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.14555063769542e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.63143903095687e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.79995044031181e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.79995044031181e-06!GO:0009259;ribonucleotide metabolic process;5.97356425109758e-06!GO:0003712;transcription cofactor activity;6.33307088716465e-06!GO:0048475;coated membrane;6.33307088716465e-06!GO:0030117;membrane coat;6.33307088716465e-06!GO:0005635;nuclear envelope;6.7075022448614e-06!GO:0015631;tubulin binding;7.11874701443535e-06!GO:0008287;protein serine/threonine phosphatase complex;7.25242329496349e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.91364652109755e-06!GO:0016887;ATPase activity;9.20712810505409e-06!GO:0048519;negative regulation of biological process;1.05519622370462e-05!GO:0006732;coenzyme metabolic process;1.14505006499782e-05!GO:0006897;endocytosis;1.23813171587672e-05!GO:0010324;membrane invagination;1.23813171587672e-05!GO:0042623;ATPase activity, coupled;1.25104590386288e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.34361032650738e-05!GO:0045259;proton-transporting ATP synthase complex;1.46757666606528e-05!GO:0019717;synaptosome;1.47238147274232e-05!GO:0051234;establishment of localization;1.56543056679155e-05!GO:0032446;protein modification by small protein conjugation;1.57908918129551e-05!GO:0009260;ribonucleotide biosynthetic process;1.72289312087391e-05!GO:0017038;protein import;1.72887870363732e-05!GO:0006099;tricarboxylic acid cycle;1.74136865354691e-05!GO:0046356;acetyl-CoA catabolic process;1.74136865354691e-05!GO:0045786;negative regulation of progression through cell cycle;1.85893188737736e-05!GO:0005770;late endosome;1.98804951823349e-05!GO:0030136;clathrin-coated vesicle;2.1156849824808e-05!GO:0016567;protein ubiquitination;2.44395359732355e-05!GO:0030425;dendrite;2.67627926242082e-05!GO:0008047;enzyme activator activity;3.08764159415293e-05!GO:0009109;coenzyme catabolic process;3.46608766234135e-05!GO:0005096;GTPase activator activity;3.8725155287314e-05!GO:0005874;microtubule;3.9967074372568e-05!GO:0005769;early endosome;4.43051226771484e-05!GO:0006323;DNA packaging;5.08113660190082e-05!GO:0030027;lamellipodium;5.89197869849576e-05!GO:0005793;ER-Golgi intermediate compartment;6.15914419114908e-05!GO:0051187;cofactor catabolic process;6.4857462661833e-05!GO:0044432;endoplasmic reticulum part;6.60253597940752e-05!GO:0006084;acetyl-CoA metabolic process;6.76791365545574e-05!GO:0016568;chromatin modification;7.05223013055121e-05!GO:0007265;Ras protein signal transduction;7.32936154561106e-05!GO:0009056;catabolic process;8.41257623765135e-05!GO:0000902;cell morphogenesis;8.48921428383732e-05!GO:0032989;cellular structure morphogenesis;8.48921428383732e-05!GO:0000151;ubiquitin ligase complex;8.562285486371e-05!GO:0005905;coated pit;8.59930161182068e-05!GO:0016070;RNA metabolic process;0.000101518410891114!GO:0000245;spliceosome assembly;0.00010409870554733!GO:0006259;DNA metabolic process;0.00010409870554733!GO:0003779;actin binding;0.000105389252973529!GO:0051128;regulation of cellular component organization and biogenesis;0.000112097001813311!GO:0050657;nucleic acid transport;0.000113056203370442!GO:0051236;establishment of RNA localization;0.000113056203370442!GO:0050658;RNA transport;0.000113056203370442!GO:0006403;RNA localization;0.000113594031781478!GO:0051246;regulation of protein metabolic process;0.000113802354694349!GO:0000159;protein phosphatase type 2A complex;0.000113812705603789!GO:0019226;transmission of nerve impulse;0.00014231658303457!GO:0051056;regulation of small GTPase mediated signal transduction;0.000152213311454408!GO:0016564;transcription repressor activity;0.000156717240542708!GO:0022890;inorganic cation transmembrane transporter activity;0.000164630877307631!GO:0030120;vesicle coat;0.000191758277557327!GO:0030662;coated vesicle membrane;0.000191758277557327!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000204890664999726!GO:0005798;Golgi-associated vesicle;0.000263055905218424!GO:0008219;cell death;0.000268025204210367!GO:0016265;death;0.000268025204210367!GO:0008601;protein phosphatase type 2A regulator activity;0.000271652560056478!GO:0019208;phosphatase regulator activity;0.000278358454158411!GO:0031072;heat shock protein binding;0.000278358454158411!GO:0044453;nuclear membrane part;0.000286799190425907!GO:0016301;kinase activity;0.000288069689381633!GO:0006613;cotranslational protein targeting to membrane;0.000301335041211294!GO:0005643;nuclear pore;0.000335350196116837!GO:0006888;ER to Golgi vesicle-mediated transport;0.000348857932956519!GO:0008017;microtubule binding;0.000353664951205101!GO:0004674;protein serine/threonine kinase activity;0.000378456817104433!GO:0045055;regulated secretory pathway;0.000385765369571793!GO:0005085;guanyl-nucleotide exchange factor activity;0.000400875132332666!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000403136071692931!GO:0015399;primary active transmembrane transporter activity;0.000403136071692931!GO:0043566;structure-specific DNA binding;0.000435711461411264!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000461973489328677!GO:0003724;RNA helicase activity;0.000470473505903518!GO:0012501;programmed cell death;0.00048390839426184!GO:0005773;vacuole;0.000520465733880749!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000527841076053795!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000549127454552722!GO:0003714;transcription corepressor activity;0.000566847878430563!GO:0006915;apoptosis;0.000578007796380663!GO:0004721;phosphoprotein phosphatase activity;0.000585579457307822!GO:0005741;mitochondrial outer membrane;0.000614004995154931!GO:0030532;small nuclear ribonucleoprotein complex;0.000623616342251753!GO:0008026;ATP-dependent helicase activity;0.000669477710593923!GO:0007269;neurotransmitter secretion;0.00066975004545805!GO:0005789;endoplasmic reticulum membrane;0.000707251473189581!GO:0016311;dephosphorylation;0.000712045494562996!GO:0019904;protein domain specific binding;0.000717897410330856!GO:0006606;protein import into nucleus;0.000752078942698934!GO:0019902;phosphatase binding;0.00075690749207216!GO:0051188;cofactor biosynthetic process;0.000772440020860755!GO:0043492;ATPase activity, coupled to movement of substances;0.000781500126270045!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000808386955464274!GO:0006752;group transfer coenzyme metabolic process;0.000836266390623907!GO:0003697;single-stranded DNA binding;0.000836266390623907!GO:0009966;regulation of signal transduction;0.000899238506254829!GO:0048489;synaptic vesicle transport;0.000912531249857408!GO:0005875;microtubule associated complex;0.000920332497254793!GO:0008654;phospholipid biosynthetic process;0.00098946612583249!GO:0004386;helicase activity;0.000993439896168154!GO:0008154;actin polymerization and/or depolymerization;0.00103088808313916!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00103610015774061!GO:0019888;protein phosphatase regulator activity;0.00105610968156904!GO:0001505;regulation of neurotransmitter levels;0.00105610968156904!GO:0051170;nuclear import;0.00109649927553925!GO:0016197;endosome transport;0.00109649927553925!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00111977415980229!GO:0015980;energy derivation by oxidation of organic compounds;0.00116834821266489!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.001196699385566!GO:0022406;membrane docking;0.00124985412796837!GO:0048278;vesicle docking;0.00124985412796837!GO:0043623;cellular protein complex assembly;0.00127011788152147!GO:0005839;proteasome core complex (sensu Eukaryota);0.00127789174317584!GO:0006904;vesicle docking during exocytosis;0.00128362868710636!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00132214260698736!GO:0004812;aminoacyl-tRNA ligase activity;0.00132214260698736!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00132214260698736!GO:0051028;mRNA transport;0.00135420348526414!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00135420348526414!GO:0050789;regulation of biological process;0.00144214114718536!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00157342839577548!GO:0051726;regulation of cell cycle;0.00160182935405669!GO:0031968;organelle outer membrane;0.0016495382302063!GO:0030118;clathrin coat;0.00167234287412918!GO:0016740;transferase activity;0.00180987270461034!GO:0019867;outer membrane;0.0019430670449821!GO:0003676;nucleic acid binding;0.00202556342392859!GO:0007049;cell cycle;0.00208859689245725!GO:0051087;chaperone binding;0.0021153081749953!GO:0006402;mRNA catabolic process;0.00212660014696214!GO:0016050;vesicle organization and biogenesis;0.00212660014696214!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00212660014696214!GO:0055083;monovalent inorganic anion homeostasis;0.00212660014696214!GO:0055064;chloride ion homeostasis;0.00212660014696214!GO:0030644;cellular chloride ion homeostasis;0.00212660014696214!GO:0016791;phosphoric monoester hydrolase activity;0.00220403031742421!GO:0000074;regulation of progression through cell cycle;0.00237084732138355!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00240457484298249!GO:0005813;centrosome;0.00243409051246271!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00243409051246271!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00243409051246271!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00243409051246271!GO:0006366;transcription from RNA polymerase II promoter;0.0024489846059259!GO:0030133;transport vesicle;0.00246105261692834!GO:0050794;regulation of cellular process;0.00247922509777491!GO:0003729;mRNA binding;0.00249782685871382!GO:0043038;amino acid activation;0.00249782685871382!GO:0006418;tRNA aminoacylation for protein translation;0.00249782685871382!GO:0043039;tRNA aminoacylation;0.00249782685871382!GO:0006470;protein amino acid dephosphorylation;0.00251669838339719!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00261967510977262!GO:0005938;cell cortex;0.00266678887392958!GO:0009108;coenzyme biosynthetic process;0.00277789433520406!GO:0009892;negative regulation of metabolic process;0.00281172488662519!GO:0007268;synaptic transmission;0.00282569276994896!GO:0043069;negative regulation of programmed cell death;0.00283091971002072!GO:0030867;rough endoplasmic reticulum membrane;0.00287908967795476!GO:0051276;chromosome organization and biogenesis;0.0028839467362907!GO:0006916;anti-apoptosis;0.00294188163934466!GO:0030427;site of polarized growth;0.00313351166388181!GO:0006607;NLS-bearing substrate import into nucleus;0.00315987576983617!GO:0006612;protein targeting to membrane;0.00315987576983617!GO:0031901;early endosome membrane;0.00318949186089148!GO:0048487;beta-tubulin binding;0.0033222595686357!GO:0008286;insulin receptor signaling pathway;0.00333491721995496!GO:0005048;signal sequence binding;0.00339840118166888!GO:0051427;hormone receptor binding;0.00341808156452598!GO:0008021;synaptic vesicle;0.00343365092173957!GO:0046578;regulation of Ras protein signal transduction;0.00345247467310009!GO:0043066;negative regulation of apoptosis;0.00365542537004006!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00373099196154712!GO:0042802;identical protein binding;0.00376714285388716!GO:0001726;ruffle;0.00385013333776911!GO:0009117;nucleotide metabolic process;0.00401240530210253!GO:0000323;lytic vacuole;0.0040754110085705!GO:0005764;lysosome;0.0040754110085705!GO:0030426;growth cone;0.00412500972055365!GO:0051168;nuclear export;0.00413641543537694!GO:0031902;late endosome membrane;0.00420604726503175!GO:0005791;rough endoplasmic reticulum;0.00430736051538956!GO:0042254;ribosome biogenesis and assembly;0.00435453275746226!GO:0051920;peroxiredoxin activity;0.00445454964795401!GO:0003713;transcription coactivator activity;0.0045890529593161!GO:0004722;protein serine/threonine phosphatase activity;0.00466224130069807!GO:0006650;glycerophospholipid metabolic process;0.00466224130069807!GO:0006891;intra-Golgi vesicle-mediated transport;0.00475502928352396!GO:0000314;organellar small ribosomal subunit;0.00502477200341495!GO:0005763;mitochondrial small ribosomal subunit;0.00502477200341495!GO:0008186;RNA-dependent ATPase activity;0.00510744536691895!GO:0004298;threonine endopeptidase activity;0.00535650983829665!GO:0005815;microtubule organizing center;0.00538839183159728!GO:0043209;myelin sheath;0.00546840037790264!GO:0050811;GABA receptor binding;0.00584814545297902!GO:0035257;nuclear hormone receptor binding;0.00600499691008413!GO:0051261;protein depolymerization;0.00600499691008413!GO:0048468;cell development;0.00605789370305642!GO:0008361;regulation of cell size;0.00617473044370823!GO:0050767;regulation of neurogenesis;0.00618412914243189!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00671661626186204!GO:0046467;membrane lipid biosynthetic process;0.00675759789684984!GO:0005516;calmodulin binding;0.00688028687011749!GO:0005869;dynactin complex;0.00701135772817729!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00701960850802402!GO:0004667;prostaglandin-D synthase activity;0.00701960850802402!GO:0050802;circadian sleep/wake cycle, sleep;0.00701960850802402!GO:0022410;circadian sleep/wake cycle process;0.00701960850802402!GO:0042749;regulation of circadian sleep/wake cycle;0.00701960850802402!GO:0065002;intracellular protein transport across a membrane;0.00757963354664022!GO:0033673;negative regulation of kinase activity;0.00837364629073772!GO:0006469;negative regulation of protein kinase activity;0.00837364629073772!GO:0007019;microtubule depolymerization;0.00842474558535212!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00846617139878694!GO:0016363;nuclear matrix;0.00868025430292237!GO:0043021;ribonucleoprotein binding;0.00884794469523723!GO:0016481;negative regulation of transcription;0.00899034649468624!GO:0006333;chromatin assembly or disassembly;0.0092503912784899!GO:0005885;Arp2/3 protein complex;0.00980724225585677!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00999505747255408!GO:0003746;translation elongation factor activity;0.0102234479181389!GO:0044448;cell cortex part;0.0102234479181389!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0104891270661003!GO:0006892;post-Golgi vesicle-mediated transport;0.0106309440224128!GO:0008139;nuclear localization sequence binding;0.010732428157895!GO:0005100;Rho GTPase activator activity;0.0117645676768209!GO:0016049;cell growth;0.0117846219778109!GO:0005774;vacuolar membrane;0.0119776897886799!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121553686416837!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121553686416837!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0126324851511827!GO:0032011;ARF protein signal transduction;0.0126324851511827!GO:0032012;regulation of ARF protein signal transduction;0.0126324851511827!GO:0050749;apolipoprotein E receptor binding;0.0129557459126927!GO:0030041;actin filament polymerization;0.0130709735417824!GO:0007272;ensheathment of neurons;0.0130709735417824!GO:0008366;axon ensheathment;0.0130709735417824!GO:0004004;ATP-dependent RNA helicase activity;0.0130709735417824!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0136319579817225!GO:0033043;regulation of organelle organization and biogenesis;0.0136319579817225!GO:0006401;RNA catabolic process;0.0136319579817225!GO:0046930;pore complex;0.0140237435074842!GO:0043087;regulation of GTPase activity;0.0140544135129824!GO:0048500;signal recognition particle;0.0140905040678267!GO:0012506;vesicle membrane;0.0142708709567462!GO:0009165;nucleotide biosynthetic process;0.0144215361807107!GO:0048167;regulation of synaptic plasticity;0.0146568142441393!GO:0000062;acyl-CoA binding;0.0146732722452393!GO:0007266;Rho protein signal transduction;0.0149273812471643!GO:0006414;translational elongation;0.0150775818303984!GO:0030030;cell projection organization and biogenesis;0.0153699735195172!GO:0048858;cell projection morphogenesis;0.0153699735195172!GO:0032990;cell part morphogenesis;0.0153699735195172!GO:0019903;protein phosphatase binding;0.0153699735195172!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0158820214672297!GO:0051348;negative regulation of transferase activity;0.0161469645915676!GO:0031324;negative regulation of cellular metabolic process;0.0161791230017961!GO:0019887;protein kinase regulator activity;0.0161929736618821!GO:0016859;cis-trans isomerase activity;0.0161929736618821!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.01649409547039!GO:0031114;regulation of microtubule depolymerization;0.0168151932223343!GO:0007026;negative regulation of microtubule depolymerization;0.0168151932223343!GO:0030384;phosphoinositide metabolic process;0.0168891783256959!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0169470331555349!GO:0005762;mitochondrial large ribosomal subunit;0.0170482332265511!GO:0000315;organellar large ribosomal subunit;0.0170482332265511!GO:0008250;oligosaccharyl transferase complex;0.017467602023342!GO:0008022;protein C-terminus binding;0.0176125001290815!GO:0030258;lipid modification;0.0185385125149878!GO:0035258;steroid hormone receptor binding;0.018561208413378!GO:0043681;protein import into mitochondrion;0.0191086367063496!GO:0004183;carboxypeptidase E activity;0.0193017962429727!GO:0030070;insulin processing;0.0193017962429727!GO:0005868;cytoplasmic dynein complex;0.0194717994057975!GO:0007017;microtubule-based process;0.0197637827497941!GO:0035035;histone acetyltransferase binding;0.0198339235409328!GO:0043488;regulation of mRNA stability;0.0199324197830656!GO:0043487;regulation of RNA stability;0.0199324197830656!GO:0042026;protein refolding;0.0204640854237502!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0205788500719976!GO:0003690;double-stranded DNA binding;0.0209598853819146!GO:0051540;metal cluster binding;0.0210232855797235!GO:0051536;iron-sulfur cluster binding;0.0210232855797235!GO:0030742;GTP-dependent protein binding;0.0211860934610103!GO:0000059;protein import into nucleus, docking;0.0217333492085837!GO:0031124;mRNA 3'-end processing;0.021746550902703!GO:0065009;regulation of a molecular function;0.021746550902703!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0222656566328678!GO:0006643;membrane lipid metabolic process;0.0227213539855474!GO:0030660;Golgi-associated vesicle membrane;0.0244737323444595!GO:0019894;kinesin binding;0.0247571658847611!GO:0007050;cell cycle arrest;0.0250629662630611!GO:0003711;transcription elongation regulator activity;0.0252770243689856!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0257153857683244!GO:0050803;regulation of synapse structure and activity;0.0257641689409375!GO:0051539;4 iron, 4 sulfur cluster binding;0.026206684221439!GO:0001508;regulation of action potential;0.026206684221439!GO:0006376;mRNA splice site selection;0.026206684221439!GO:0000389;nuclear mRNA 3'-splice site recognition;0.026206684221439!GO:0005092;GDP-dissociation inhibitor activity;0.0262864842268755!GO:0006974;response to DNA damage stimulus;0.0263359562547703!GO:0004672;protein kinase activity;0.0274900590746747!GO:0030132;clathrin coat of coated pit;0.0274922228008338!GO:0005099;Ras GTPase activator activity;0.0278116431554163!GO:0030137;COPI-coated vesicle;0.0283778446342045!GO:0030119;AP-type membrane coat adaptor complex;0.0292818733467885!GO:0007005;mitochondrion organization and biogenesis;0.0305203455284614!GO:0006364;rRNA processing;0.0307561250421989!GO:0030658;transport vesicle membrane;0.0308984268011969!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0309457707329878!GO:0042176;regulation of protein catabolic process;0.0311399459599124!GO:0004683;calmodulin-dependent protein kinase activity;0.03127453268401!GO:0005765;lysosomal membrane;0.0314454992349325!GO:0007034;vacuolar transport;0.0339890823212581!GO:0042995;cell projection;0.0344825507428179!GO:0006818;hydrogen transport;0.0344825507428179!GO:0006399;tRNA metabolic process;0.0345227606681243!GO:0006595;polyamine metabolic process;0.0345581807556635!GO:0051789;response to protein stimulus;0.0345581807556635!GO:0006986;response to unfolded protein;0.0345581807556635!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0346307550213058!GO:0042578;phosphoric ester hydrolase activity;0.0348938960781117!GO:0044437;vacuolar part;0.0350871395750317!GO:0004576;oligosaccharyl transferase activity;0.0357224098535733!GO:0044433;cytoplasmic vesicle part;0.0357224098535733!GO:0051252;regulation of RNA metabolic process;0.0357257519035374!GO:0001666;response to hypoxia;0.0358214084845606!GO:0019207;kinase regulator activity;0.0360865338717847!GO:0006468;protein amino acid phosphorylation;0.0363647758812328!GO:0006378;mRNA polyadenylation;0.0364780062455643!GO:0017166;vinculin binding;0.0364780062455643!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0365573212116524!GO:0046488;phosphatidylinositol metabolic process;0.0371441290663572!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0374800264122741!GO:0045047;protein targeting to ER;0.0374800264122741!GO:0008180;signalosome;0.0374800264122741!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0392081294556536!GO:0031371;ubiquitin conjugating enzyme complex;0.0393394927435625!GO:0051287;NAD binding;0.0399344719889473!GO:0045892;negative regulation of transcription, DNA-dependent;0.0399344719889473!GO:0046474;glycerophospholipid biosynthetic process;0.0405894829867565!GO:0032535;regulation of cellular component size;0.0407278668731719!GO:0006383;transcription from RNA polymerase III promoter;0.040799678569504!GO:0030911;TPR domain binding;0.0408714754538282!GO:0046839;phospholipid dephosphorylation;0.0413618954426808!GO:0030131;clathrin adaptor complex;0.0413618954426808!GO:0043086;negative regulation of catalytic activity;0.0420088348251367!GO:0015992;proton transport;0.0420982105415506!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0424311897075244!GO:0004423;iduronate-2-sulfatase activity;0.0424539625668772!GO:0001558;regulation of cell growth;0.0426164089437684!GO:0030832;regulation of actin filament length;0.0427380564654947!GO:0005667;transcription factor complex;0.0429322461384011!GO:0007006;mitochondrial membrane organization and biogenesis;0.0444318850124814!GO:0016072;rRNA metabolic process;0.0448517377874514!GO:0008088;axon cargo transport;0.0450418929224611!GO:0051248;negative regulation of protein metabolic process;0.0452012960915009!GO:0065007;biological regulation;0.0460958133982908!GO:0008312;7S RNA binding;0.0461839694885623!GO:0005802;trans-Golgi network;0.04736637766458!GO:0006887;exocytosis;0.0480103517619977!GO:0030125;clathrin vesicle coat;0.0480942187223146!GO:0030665;clathrin coated vesicle membrane;0.0480942187223146!GO:0005952;cAMP-dependent protein kinase complex;0.0486830324808277!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0488655801503229!GO:0019198;transmembrane receptor protein phosphatase activity;0.0488655801503229!GO:0007243;protein kinase cascade;0.0489769010091659!GO:0016615;malate dehydrogenase activity;0.049268510750306!GO:0015629;actin cytoskeleton;0.0493957137328902!GO:0001578;microtubule bundle formation;0.049502533914467 | |||
|sample_id=10164 | |sample_id=10164 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=caudate nucleus | |sample_tissue=caudate nucleus | ||
|top_motifs=RFX1:3.97175482342;RFX2..5_RFXANK_RFXAP:3.64544407433;MYFfamily:3.48263504082;OCT4_SOX2{dimer}:3.44705555159;REST:3.37911675436;ZFP161:3.30445291975;EGR1..3:3.3009324538;HBP1_HMGB_SSRP1_UBTF:3.23659739417;AHR_ARNT_ARNT2:3.14322991611;NHLH1,2:3.10008124133;PRDM1:2.98687000341;MED-1{core}:2.98125010622;ARID5B:2.83864110819;RREB1:2.76841387688;CUX2:2.65440622588;ZBTB6:2.6391000515;SOX2:2.63895781193;MTE{core}:2.62091518657;PRRX1,2:2.57613833364;GTF2I:2.53903690789;ATF2:2.33500679466;DBP:2.32104832072;PAX5:2.28033591437;MZF1:2.2752053433;FOXD3:2.273471206;TFAP2B:2.26826958626;MTF1:2.13430986268;BREu{core}:2.12076182831;FOXM1:2.10259643387;ADNP_IRX_SIX_ZHX:2.04113697876;GATA4:2.01740559095;HIC1:1.96828061427;ALX1:1.93255068612;NRF1:1.93212679757;NKX6-1,2:1.92620447759;NFIL3:1.92463010072;CDC5L:1.90731523935;TLX2:1.88830372693;SOX{8,9,10}:1.88351671705;ONECUT1,2:1.87255250416;PATZ1:1.86097573346;MAZ:1.84119471543;POU6F1:1.82648880475;SOX5:1.82397206215;NKX2-3_NKX2-5:1.82162050117;RBPJ:1.81618331117;POU3F1..4:1.78747124153;HOXA9_MEIS1:1.75191795005;NKX3-2:1.68263738134;LMO2:1.66970033105;IKZF2:1.60980478687;POU5F1:1.46713070888;TGIF1:1.45479611071;FOXP1:1.43495498863;FOX{F1,F2,J1}:1.42135208614;GFI1B:1.40723167677;FOXP3:1.386421239;HOX{A4,D4}:1.38478919414;KLF4:1.35564706169;SP1:1.35488817538;EP300:1.27492963821;PAX4:1.24092861317;PAX6:1.23711963891;SMAD1..7,9:1.2290848925;T:1.20739699215;ZNF143:1.17446354099;FOXN1:1.15416526006;PAX1,9:1.13025675728;LEF1_TCF7_TCF7L1,2:1.0949187807;HMGA1,2:1.08720663694;AR:1.07305828742;NFIX:1.03394172991;CRX:1.0110876222;NANOG:0.994833373561;MYOD1:0.991104663635;BPTF:0.974170414151;ZNF384:0.942465665648;MAFB:0.931198259414;CREB1:0.927986303704;PBX1:0.908326512242;POU1F1:0.907691845941;SOX17:0.860780921507;ZBTB16:0.850144145882;FOX{I1,J2}:0.838640101914;STAT1,3:0.822483923694;HAND1,2:0.771363907703;VSX1,2:0.769522481604;GCM1,2:0.769402373041;EBF1:0.766657062297;GFI1:0.756684719811;XBP1:0.756606085422;ZNF423:0.714268969241;STAT2,4,6:0.688040117199;MYBL2:0.672760502278;SREBF1,2:0.662774701352;GTF2A1,2:0.644824734206;JUN:0.642226393389;HSF1,2:0.640207283913;ZIC1..3:0.61970363557;TOPORS:0.618346308498;GZF1:0.612049337185;TFDP1:0.605415590561;TFAP2{A,C}:0.605111490629;FOX{D1,D2}:0.59525821534;ZEB1:0.48881919606;HOX{A6,A7,B6,B7}:0.45440070457;TEF:0.452480133633;HMX1:0.382671517814;YY1:0.294706941589;FOXO1,3,4:0.277486013443;PAX2:0.252390663708;ZNF238:0.237762105473;LHX3,4:0.223764219486;MEF2{A,B,C,D}:0.11225992826;NR3C1:0.0930556059392;NFY{A,B,C}:0.0929973289931;TLX1..3_NFIC{dimer}:0.0795459353879;RORA:0.0722619324133;FOXQ1:0.0328744869979;UFEwm:0.0286624996041;CDX1,2,4:0.0156840135201;IRF7:-0.00803854912265;ATF4:-0.0434581098388;ATF5_CREB3:-0.0604014606635;PDX1:-0.147662383106;AIRE:-0.169764460621;SPZ1:-0.173211394033;NFATC1..3:-0.176853806967;XCPE1{core}:-0.196625955154;IRF1,2:-0.248675733533;ESRRA:-0.289344796258;PAX3,7:-0.302434136581;SNAI1..3:-0.34087679676;bHLH_family:-0.358214258675;NFE2L2:-0.377620779651;FOXL1:-0.400594919388;SPI1:-0.400808413233;CEBPA,B_DDIT3:-0.451386944827;HIF1A:-0.504850409775;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550072318092;SPIB:-0.602343764429;IKZF1:-0.609139153158;DMAP1_NCOR{1,2}_SMARC:-0.621580385141;NFE2:-0.635368096072;PITX1..3:-0.718954625815;ETS1,2:-0.733050326497;GATA6:-0.79030955319;TBX4,5:-0.817288736383;FOXA2:-0.860870022232;NKX3-1:-0.898558698495;TFAP4:-0.906274400786;HNF1A:-0.923098258543;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.945970071261;EVI1:-0.979313622951;ATF6:-0.98026160694;NFE2L1:-0.996706779087;RXR{A,B,G}:-1.01151692168;FOS_FOS{B,L1}_JUN{B,D}:-1.03121544527;ELK1,4_GABP{A,B1}:-1.03669684464;TFCP2:-1.05398327274;NANOG{mouse}:-1.08371132835;TEAD1:-1.08422839136;FOSL2:-1.09891100716;BACH2:-1.10304828688;TP53:-1.11667761657;HNF4A_NR2F1,2:-1.15567048532;ZNF148:-1.19451018058;RUNX1..3:-1.2015532963;NR5A1,2:-1.21352722058;NFKB1_REL_RELA:-1.21471380382;ELF1,2,4:-1.2948410279;E2F1..5:-1.34062956736;NKX2-2,8:-1.34086664912;MYB:-1.36170163162;PAX8:-1.37868257075;ALX4:-1.43480441842;NR1H4:-1.44520583521;HLF:-1.47096198073;GLI1..3:-1.48841776774;ESR1:-1.50307563867;TBP:-1.52291814197;POU2F1..3:-1.56348894958;RXRA_VDR{dimer}:-1.60491677131;SRF:-1.86413611851;TAL1_TCF{3,4,12}:-1.89125288471;STAT5{A,B}:-1.8987991289;NKX2-1,4:-1.9266389183;HES1:-2.12207130608;NR6A1:-2.17728042645;HOX{A5,B5}:-2.65058963514;PPARG:-2.79079045759;EN1,2:-2.86071810384 | |top_motifs=RFX1:3.97175482342;RFX2..5_RFXANK_RFXAP:3.64544407433;MYFfamily:3.48263504082;OCT4_SOX2{dimer}:3.44705555159;REST:3.37911675436;ZFP161:3.30445291975;EGR1..3:3.3009324538;HBP1_HMGB_SSRP1_UBTF:3.23659739417;AHR_ARNT_ARNT2:3.14322991611;NHLH1,2:3.10008124133;PRDM1:2.98687000341;MED-1{core}:2.98125010622;ARID5B:2.83864110819;RREB1:2.76841387688;CUX2:2.65440622588;ZBTB6:2.6391000515;SOX2:2.63895781193;MTE{core}:2.62091518657;PRRX1,2:2.57613833364;GTF2I:2.53903690789;ATF2:2.33500679466;DBP:2.32104832072;PAX5:2.28033591437;MZF1:2.2752053433;FOXD3:2.273471206;TFAP2B:2.26826958626;MTF1:2.13430986268;BREu{core}:2.12076182831;FOXM1:2.10259643387;ADNP_IRX_SIX_ZHX:2.04113697876;GATA4:2.01740559095;HIC1:1.96828061427;ALX1:1.93255068612;NRF1:1.93212679757;NKX6-1,2:1.92620447759;NFIL3:1.92463010072;CDC5L:1.90731523935;TLX2:1.88830372693;SOX{8,9,10}:1.88351671705;ONECUT1,2:1.87255250416;PATZ1:1.86097573346;MAZ:1.84119471543;POU6F1:1.82648880475;SOX5:1.82397206215;NKX2-3_NKX2-5:1.82162050117;RBPJ:1.81618331117;POU3F1..4:1.78747124153;HOXA9_MEIS1:1.75191795005;NKX3-2:1.68263738134;LMO2:1.66970033105;IKZF2:1.60980478687;POU5F1:1.46713070888;TGIF1:1.45479611071;FOXP1:1.43495498863;FOX{F1,F2,J1}:1.42135208614;GFI1B:1.40723167677;FOXP3:1.386421239;HOX{A4,D4}:1.38478919414;KLF4:1.35564706169;SP1:1.35488817538;EP300:1.27492963821;PAX4:1.24092861317;PAX6:1.23711963891;SMAD1..7,9:1.2290848925;T:1.20739699215;ZNF143:1.17446354099;FOXN1:1.15416526006;PAX1,9:1.13025675728;LEF1_TCF7_TCF7L1,2:1.0949187807;HMGA1,2:1.08720663694;AR:1.07305828742;NFIX:1.03394172991;CRX:1.0110876222;NANOG:0.994833373561;MYOD1:0.991104663635;BPTF:0.974170414151;ZNF384:0.942465665648;MAFB:0.931198259414;CREB1:0.927986303704;PBX1:0.908326512242;POU1F1:0.907691845941;SOX17:0.860780921507;ZBTB16:0.850144145882;FOX{I1,J2}:0.838640101914;STAT1,3:0.822483923694;HAND1,2:0.771363907703;VSX1,2:0.769522481604;GCM1,2:0.769402373041;EBF1:0.766657062297;GFI1:0.756684719811;XBP1:0.756606085422;ZNF423:0.714268969241;STAT2,4,6:0.688040117199;MYBL2:0.672760502278;SREBF1,2:0.662774701352;GTF2A1,2:0.644824734206;JUN:0.642226393389;HSF1,2:0.640207283913;ZIC1..3:0.61970363557;TOPORS:0.618346308498;GZF1:0.612049337185;TFDP1:0.605415590561;TFAP2{A,C}:0.605111490629;FOX{D1,D2}:0.59525821534;ZEB1:0.48881919606;HOX{A6,A7,B6,B7}:0.45440070457;TEF:0.452480133633;HMX1:0.382671517814;YY1:0.294706941589;FOXO1,3,4:0.277486013443;PAX2:0.252390663708;ZNF238:0.237762105473;LHX3,4:0.223764219486;MEF2{A,B,C,D}:0.11225992826;NR3C1:0.0930556059392;NFY{A,B,C}:0.0929973289931;TLX1..3_NFIC{dimer}:0.0795459353879;RORA:0.0722619324133;FOXQ1:0.0328744869979;UFEwm:0.0286624996041;CDX1,2,4:0.0156840135201;IRF7:-0.00803854912265;ATF4:-0.0434581098388;ATF5_CREB3:-0.0604014606635;PDX1:-0.147662383106;AIRE:-0.169764460621;SPZ1:-0.173211394033;NFATC1..3:-0.176853806967;XCPE1{core}:-0.196625955154;IRF1,2:-0.248675733533;ESRRA:-0.289344796258;PAX3,7:-0.302434136581;SNAI1..3:-0.34087679676;bHLH_family:-0.358214258675;NFE2L2:-0.377620779651;FOXL1:-0.400594919388;SPI1:-0.400808413233;CEBPA,B_DDIT3:-0.451386944827;HIF1A:-0.504850409775;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550072318092;SPIB:-0.602343764429;IKZF1:-0.609139153158;DMAP1_NCOR{1,2}_SMARC:-0.621580385141;NFE2:-0.635368096072;PITX1..3:-0.718954625815;ETS1,2:-0.733050326497;GATA6:-0.79030955319;TBX4,5:-0.817288736383;FOXA2:-0.860870022232;NKX3-1:-0.898558698495;TFAP4:-0.906274400786;HNF1A:-0.923098258543;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.945970071261;EVI1:-0.979313622951;ATF6:-0.98026160694;NFE2L1:-0.996706779087;RXR{A,B,G}:-1.01151692168;FOS_FOS{B,L1}_JUN{B,D}:-1.03121544527;ELK1,4_GABP{A,B1}:-1.03669684464;TFCP2:-1.05398327274;NANOG{mouse}:-1.08371132835;TEAD1:-1.08422839136;FOSL2:-1.09891100716;BACH2:-1.10304828688;TP53:-1.11667761657;HNF4A_NR2F1,2:-1.15567048532;ZNF148:-1.19451018058;RUNX1..3:-1.2015532963;NR5A1,2:-1.21352722058;NFKB1_REL_RELA:-1.21471380382;ELF1,2,4:-1.2948410279;E2F1..5:-1.34062956736;NKX2-2,8:-1.34086664912;MYB:-1.36170163162;PAX8:-1.37868257075;ALX4:-1.43480441842;NR1H4:-1.44520583521;HLF:-1.47096198073;GLI1..3:-1.48841776774;ESR1:-1.50307563867;TBP:-1.52291814197;POU2F1..3:-1.56348894958;RXRA_VDR{dimer}:-1.60491677131;SRF:-1.86413611851;TAL1_TCF{3,4,12}:-1.89125288471;STAT5{A,B}:-1.8987991289;NKX2-1,4:-1.9266389183;HES1:-2.12207130608;NR6A1:-2.17728042645;HOX{A5,B5}:-2.65058963514;PPARG:-2.79079045759;EN1,2:-2.86071810384 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10164-103B2;search_select_hide=table117:FF:10164-103B2 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | caudate nucleus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12321 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12321
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12321
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0391 |
| 10 | 10 | 0.0446 |
| 100 | 100 | 0.332 |
| 101 | 101 | 0.51 |
| 102 | 102 | 0.717 |
| 103 | 103 | 0.119 |
| 104 | 104 | 0.0874 |
| 105 | 105 | 0.122 |
| 106 | 106 | 0.0229 |
| 107 | 107 | 0.0755 |
| 108 | 108 | 0.767 |
| 109 | 109 | 0.00496 |
| 11 | 11 | 0.0137 |
| 110 | 110 | 0.0599 |
| 111 | 111 | 0.087 |
| 112 | 112 | 0.397 |
| 113 | 113 | 0.74 |
| 114 | 114 | 0.132 |
| 115 | 115 | 0.898 |
| 116 | 116 | 0.18 |
| 117 | 117 | 0.0131 |
| 118 | 118 | 0.185 |
| 119 | 119 | 0.124 |
| 12 | 12 | 0.924 |
| 120 | 120 | 0.161 |
| 121 | 121 | 0.269 |
| 122 | 122 | 0.831 |
| 123 | 123 | 0.823 |
| 124 | 124 | 0.332 |
| 125 | 125 | 0.281 |
| 126 | 126 | 0.0551 |
| 127 | 127 | 0.335 |
| 128 | 128 | 0.103 |
| 129 | 129 | 0.463 |
| 13 | 13 | 0.00342 |
| 130 | 130 | 0.417 |
| 131 | 131 | 0.168 |
| 132 | 132 | 0.652 |
| 133 | 133 | 0.0232 |
| 134 | 134 | 0.77 |
| 135 | 135 | 0.19 |
| 136 | 136 | 0.0165 |
| 137 | 137 | 0.606 |
| 138 | 138 | 0.925 |
| 139 | 139 | 0.152 |
| 14 | 14 | 0.795 |
| 140 | 140 | 0.348 |
| 141 | 141 | 0.339 |
| 142 | 142 | 0.55 |
| 143 | 143 | 0.0196 |
| 144 | 144 | 0.861 |
| 145 | 145 | 0.169 |
| 146 | 146 | 0.456 |
| 147 | 147 | 0.924 |
| 148 | 148 | 0.0984 |
| 149 | 149 | 0.21 |
| 15 | 15 | 0.084 |
| 150 | 150 | 0.177 |
| 151 | 151 | 0.499 |
| 152 | 152 | 0.0741 |
| 153 | 153 | 0.826 |
| 154 | 154 | 0.514 |
| 155 | 155 | 0.686 |
| 156 | 156 | 0.57 |
| 157 | 157 | 0.548 |
| 158 | 158 | 0.763 |
| 159 | 159 | 0.0493 |
| 16 | 16 | 0.064 |
| 160 | 160 | 0.197 |
| 161 | 161 | 0.331 |
| 162 | 162 | 0.943 |
| 163 | 163 | 0.901 |
| 164 | 164 | 0.041 |
| 165 | 165 | 0.0803 |
| 166 | 166 | 0.81 |
| 167 | 167 | 0.619 |
| 168 | 168 | 0.289 |
| 169 | 169 | 0.00748 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.134 |
| 19 | 19 | 0.12 |
| 2 | 2 | 0.787 |
| 20 | 20 | 0.199 |
| 21 | 21 | 0.1 |
| 22 | 22 | 0.182 |
| 23 | 23 | 0.25 |
| 24 | 24 | 0.0663 |
| 25 | 25 | 0.51 |
| 26 | 26 | 4.05408e-4 |
| 27 | 27 | 0.646 |
| 28 | 28 | 0.728 |
| 29 | 29 | 0.018 |
| 3 | 3 | 0.0569 |
| 30 | 30 | 0.869 |
| 31 | 31 | 0.776 |
| 32 | 32 | 0.0294 |
| 33 | 33 | 0.0699 |
| 34 | 34 | 0.649 |
| 35 | 35 | 0.638 |
| 36 | 36 | 0.12 |
| 37 | 37 | 0.0347 |
| 38 | 38 | 0.273 |
| 39 | 39 | 0.306 |
| 4 | 4 | 0.714 |
| 40 | 40 | 0.0295 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.278 |
| 43 | 43 | 0.112 |
| 44 | 44 | 0.231 |
| 45 | 45 | 0.646 |
| 46 | 46 | 0.0657 |
| 47 | 47 | 0.0666 |
| 48 | 48 | 0.0569 |
| 49 | 49 | 0.148 |
| 5 | 5 | 0.365 |
| 50 | 50 | 0.345 |
| 51 | 51 | 0.386 |
| 52 | 52 | 0.438 |
| 53 | 53 | 0.952 |
| 54 | 54 | 0.348 |
| 55 | 55 | 0.467 |
| 56 | 56 | 0.489 |
| 57 | 57 | 0.264 |
| 58 | 58 | 0.288 |
| 59 | 59 | 0.0723 |
| 6 | 6 | 0.907 |
| 60 | 60 | 0.0553 |
| 61 | 61 | 0.129 |
| 62 | 62 | 0.166 |
| 63 | 63 | 0.151 |
| 64 | 64 | 0.157 |
| 65 | 65 | 0.187 |
| 66 | 66 | 0.125 |
| 67 | 67 | 0.336 |
| 68 | 68 | 0.195 |
| 69 | 69 | 0.32 |
| 7 | 7 | 0.0659 |
| 70 | 70 | 0.0431 |
| 71 | 71 | 0.0118 |
| 72 | 72 | 0.4 |
| 73 | 73 | 0.0348 |
| 74 | 74 | 0.596 |
| 75 | 75 | 0.0394 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.152 |
| 78 | 78 | 0.00133 |
| 79 | 79 | 0.219 |
| 8 | 8 | 0.0761 |
| 80 | 80 | 0.651 |
| 81 | 81 | 0.562 |
| 82 | 82 | 0.428 |
| 83 | 83 | 0.0876 |
| 84 | 84 | 0.843 |
| 85 | 85 | 0.153 |
| 86 | 86 | 0.217 |
| 87 | 87 | 9.8541e-4 |
| 88 | 88 | 0.775 |
| 89 | 89 | 0.377 |
| 9 | 9 | 0.415 |
| 90 | 90 | 0.0499 |
| 91 | 91 | 0.324 |
| 92 | 92 | 0.361 |
| 93 | 93 | 0.945 |
| 94 | 94 | 0.133 |
| 95 | 95 | 0.0263 |
| 96 | 96 | 0.811 |
| 97 | 97 | 0.729 |
| 98 | 98 | 0.179 |
| 99 | 99 | 0.43 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12321
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010164 human caudate nucleus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)
