FF:10164-103B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005372 | ||
|HumanCAGEScanFiles=NCig10035;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.NCig10035.10164-103B2.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008630;DRR009502;DRZ000927;DRZ002312;DRZ012277;DRZ013662 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.49!310.54!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!291.60!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.17!146.40!OLIG1;;chr3:181429704..181429722,+!p1@SOX2!2.00!99.25!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.98!94.31!SOX10;;chrX:82763292..82763317,+!p1@POU3F4!1.84!68.26!POU3F4;;chr9:114287433..114287513,+!p1@ZNF483!1.81!157.86!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.80!61.38!ARNT2;;chr17:53342311..53342400,+!p1@HLF!1.76!65.00!HLF;;chr15:80733570..80733659,+!p2@ARNT2!1.74!53.54!ARNT2;;chr14:29235961..29236008,+!p1@FOXG1!1.74!53.54!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.68!67.41!CSRNP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.46!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.62!41.00!OLIG2;;chr12:54779511..54779577,-!p5@ZNF385A!1.62!40.40!ZNF385A;;chr12:106976678..106976708,+!p2@RFX4!1.60!38.95!RFX4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.59!37.99!SMARCE1;;chr16:1031762..1031781,+!p1@SOX8!1.59!37.87!SOX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.58!50.05!BHLHE41;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.26!SOX2;;chr17:38219209..38219230,+!p1@THRA!1.57!444.28!THRA;;chr2:60781201..60781258,-!p3@BCL11A!1.56!34.97!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.55!71.03!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.73!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.37!HIF3A;;chr6:19837592..19837621,+!p1@ID4!1.49!177.28!ID4;;chr18:55102598..55102623,+!p1@ONECUT2!1.49!30.15!ONECUT2;;chr14:29234581..29234601,+!p2@FOXG1!1.46!28.10!FOXG1;;chr13:72441315..72441454,-!p1@DACH1!1.44!51.74!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.43!29.06!RORB;;chr2:2334997..2335053,-!p1@MYT1L!1.42!25.20!MYT1L;;chrX:85969626..85969664,+!p1@DACH2!1.41!24.72!DACH2;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.36!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.39!23.28!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!38.23!ZEB2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.83!NPAS3;;chr12:26277956..26277980,-!p1@BHLHE41!1.35!75.73!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.05!SOX15;;chr16:85932760..85932775,+!p1@IRF8!1.34!21.10!IRF8;;chr22:41763274..41763318,+!p3@TEF!1.34!20.74!TEF;;chr17:70117153..70117174,+!p1@SOX9!1.33!204.77!SOX9;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.84!KLF15;;chr12:106976774..106976788,+!p1@RFX4!1.32!19.78!RFX4;;chr11:47400078..47400106,-!p1@SPI1!1.32!19.66!SPI1;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.66!HIF3A;;chr2:45168875..45168916,+!p1@SIX3!1.31!19.42!SIX3;;chr8:53322304..53322340,-!p1@ST18!1.30!19.17!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!19.17!ZBED1;;chr14:29236269..29236285,+!p3@FOXG1!1.30!18.81!FOXG1;;chr2:2328299..2328363,-!p3@MYT1L!1.28!18.21!MYT1L;;chr15:31658288..31658338,+!p4@KLF13!1.28!18.21!KLF13;;chr9:126774018..126774055,+!p1@LHX2!1.28!18.21!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.28!17.85!KCNIP3;;chr3:25469724..25469773,+!p1@RARB!1.26!24.60!RARB;;chr10:64134120..64134183,+!p1@ZNF365!1.26!20.86!ZNF365;;chr7:96654133..96654150,-!p1@DLX5!1.26!17.12!DLX5;;chrX:82763265..82763283,+!p2@POU3F4!1.26!17.00!POU3F4;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr2:73520667..73520683,-!p1@EGR4!1.25!16.76!EGR4;;chr18:55102628..55102646,+!p2@ONECUT2!1.25!16.64!ONECUT2;;chr3:114173720..114173794,-!p6@ZBTB20!1.24!16.28!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.92!ZNF727;;chr4:57547751..57547764,-!p6@HOPX!1.23!15.80!HOPX;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.31!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.22!15.68!PAX6;;chr19:57352109..57352153,-!p2@ZIM2!1.21!15.20!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.19!14.59!NKX6-2;;chr2:2330039..2330072,-!p6@MYT1L!1.19!14.47!MYT1L;;chr19:38085768..38085821,+!p1@ZNF540!1.18!21.10!ZNF540;;chr6:108487289..108487302,+!p1@NR2E1!1.18!14.11!NR2E1;;chr7:150974206..150974255,-!p1@SMARCD3!1.17!84.66!SMARCD3;;chr1:61548069..61548102,+!p3@NFIA!1.17!33.41!NFIA;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.78!HEY1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.87!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.75!POU3F3;;chr14:58797974..58798011,+!p3@ARID4A!1.16!13.39!ARID4A;;chr3:114819124..114819200,-!p3@ZBTB20!1.15!30.51!ZBTB20;;chr17:38219143..38219154,+!p2@THRA!1.14!45.71!THRA;;chr17:38219184..38219195,+!p3@THRA!1.14!25.81!THRA;;chr11:8102846..8102892,+!p1@TUB!1.14!18.09!TUB;;chr19:53193731..53193767,-!p1@ZNF83!1.13!110.83!ZNF83;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.47!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.13!12.42!FOXJ1;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.30!NPAS3;;chr2:45168834..45168847,+!p2@SIX3!1.12!12.30!SIX3;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.94!SIX3;;chr16:67197654..67197716,+!p3@HSF4!1.11!11.94!HSF4;;chr3:126076264..126076305,-!p2@KLF15!1.10!16.28!KLF15;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.66!MEIS2;;chr15:61521417..61521460,-!p2@RORA!1.09!25.20!RORA;;chr8:53322347..53322378,-!p2@ST18!1.09!11.22!ST18;;chr9:3525867..3525902,-!p3@RFX3!1.08!38.35!RFX3;;chr8:30890810..30890880,-!p1@PURG!1.08!11.09!PURG;;chr10:119302232..119302265,+!p1@EMX2!1.08!10.97!EMX2;;chr14:21994337..21994442,-!p1@SALL2!1.07!29.67!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.07!23.03!ZNF395;;chr8:93074848..93074871,-!p3@RUNX1T1!1.07!10.73!RUNX1T1;;chr2:42721205..42721307,+!p4@MTA3!1.07!10.73!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.06!35.21!RERE;;chr8:22550530..22550609,-!p2@EGR3!1.05!10.25!EGR3;;chr1:2461692..2461710,-!p1@HES5!1.04!10.01!HES5;;chr3:141105235..141105307,+!p7@ZBTB38!1.04!9.89!ZBTB38;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.89!PKNOX2;;chr3:33482052..33482116,-!p2@UBP1!1.03!14.95!UBP1;;chr6:126112039..126112062,+!p8@NCOA7!1.03!11.82!NCOA7;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.65!DACH1;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.35!KLF5;;chr2:2328095..2328125,-!p7@MYT1L!1.02!9.53!MYT1L;;chr1:40105299..40105326,-!p1@HEYL!1.02!9.53!HEYL;;chr15:80696666..80696700,+!p4@ARNT2!1.02!9.53!ARNT2;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.61!HEY2;;chr8:80680024..80680046,-!p2@HEY1!1.01!10.49!HEY1;;chr10:48355030..48355090,+!p1@ZNF488!1.00!11.70!ZNF488;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.92!ZIC1;;chr19:38720294..38720348,-!p1@DPF1!0.99!11.09!DPF1;;chr14:33408072..33408114,+!p2@NPAS3!0.99!10.49!NPAS3;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.68!ZNF366;;chr5:178368186..178368238,+!p1@ZNF454!0.98!15.56!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.27!ZNF540;;chr12:24715376..24715432,-!p1@SOX5!0.98!10.97!SOX5;;chr15:37392576..37392589,-!p12@MEIS2!0.98!10.49!MEIS2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.44!ZSCAN1;;chr2:42721689..42721723,+!p6@MTA3!0.98!8.44!MTA3;;chr22:41777927..41777971,+!p1@TEF!0.97!72.00!TEF;;chr17:38256822..38256851,-!p1@NR1D1!0.97!67.17!NR1D1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.37!ZNF737;;chr20:62680984..62680999,-!p1@SOX18!0.97!11.22!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.97!8.32!ERG;;chr3:187463179..187463201,-!p2@BCL6!0.96!34.25!BCL6;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:22005197..22005261,-!p3@SALL2!0.96!8.20!SALL2;;chr16:51185318..51185348,-!p2@SALL1!0.96!8.08!SALL1;;chr7:113726357..113726443,+!p1@FOXP2!0.95!13.75!FOXP2;;chr19:49139477..49139552,-!p4@DBP!0.95!10.13!DBP;;chr18:6414884..6414942,-!p1@L3MBTL4!0.95!10.01!L3MBTL4;;chr4:57547454..57547469,-!p1@HOPX!0.95!7.96!HOPX;;chr22:41763452..41763466,+!p2@TEF!0.95!7.84!TEF;;chr7:64337960..64337986,+!p6@ZNF273!0.95!7.84!ZNF273;;chr12:24102576..24102623,-!p2@SOX5!0.95!7.84!SOX5;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.53!ZFHX4;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.49!STAT4;;chr2:113057415..113057477,+!p3@ZC3H6!0.94!10.13!ZC3H6;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.20!ZNF334;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.78!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.82!ZNF385A;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.20!POU3F1;;chr16:8963020..8963054,-!p6@CARHSP1!0.93!7.60!CARHSP1;;chr16:67197776..67197831,+!p4@HSF4!0.92!7.36!HSF4;;chr7:64337988..64338010,+!p8@ZNF273!0.92!7.36!ZNF273;;chr9:126774058..126774081,+!p3@LHX2!0.92!7.36!LHX2;;chr2:175199675..175199688,+!p1@SP9!0.92!7.36!SP9;;chr3:114173859..114173873,-!p15@ZBTB20!0.92!7.36!ZBTB20;;chr7:96634878..96634900,+!p2@DLX6!0.92!7.24!DLX6;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.25!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!0.91!7.12!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!0.91!7.12!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!0.91!7.12!ARID4A;;chr6:15401104..15401166,+!p5@JARID2!0.91!7.12!JARID2;;chr2:45169193..45169219,+!p3@SIX3!0.91!7.12!SIX3;;chr15:61521462..61521482,-!p4@RORA!0.91!7.12!RORA;;chr16:67198633..67198671,+!p1@HSF4!0.91!7.12!HSF4;;chr9:3525727..3525828,-!p2@RFX3!0.90!18.45!RFX3;;chr15:37391271..37391376,-!p5@MEIS2!0.90!13.39!MEIS2;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.61!ZNF471;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.89!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.90!8.80!ZNF793;;chr2:45168959..45168990,+!p6@SIX3!0.90!6.99!SIX3;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.87!MLXIPL;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!471.29!TSC22D1;;chr7:64023441..64023462,-!p1@ZNF680!0.89!56.56!ZNF680;;chr9:3525910..3525955,-!p4@RFX3!0.89!21.22!RFX3;;chrX:106959661..106959763,-!p4@TSC22D3!0.89!20.62!TSC22D3;;chrX:118739835..118739862,-!p1@NKRF!0.89!7.48!NKRF;;chr11:85393886..85393913,-!p3@CREBZF!0.89!6.75!CREBZF;;chr15:80696410..80696477,+!p6@ARNT2!0.89!6.75!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!0.89!6.75!NFIX;;chr7:50344289..50344323,+!p1@IKZF1!0.89!6.75!IKZF1;;chr7:96635448..96635470,+!p5@DLX6!0.89!6.75!DLX6;;chr20:3388541..3388575,-!p2@C20orf194!0.88!27.13!C20orf194;;chr16:79634624..79634642,-!p1@MAF!0.88!26.89!MAF;;chr2:60780607..60780624,-!p2@BCL11A!0.88!20.98!BCL11A;;chrX:70315688..70315709,+!p1@FOXO4!0.88!15.92!FOXO4;;chr7:64023410..64023428,-!p2@ZNF680!0.88!10.61!ZNF680;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.29!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.88!8.08!M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!0.41!2.53!PURA;;chr19:13106383..13106423,+!p8@NFIX!0.41!2.29!NFIX;;chr19:37407411..37407451,+!p3@ZNF568!0.41!2.29!ZNF568;;chr18:42260030..42260055,+!p3@SETBP1!0.41!2.17!SETBP1;;chr15:57511589..57511608,+!p4@TCF12!0.41!1.57!TCF12;;chr18:53253323..53253359,-!p19@TCF4!0.41!1.57!TCF4;;chr18:55102959..55102985,+!p6@ONECUT2!0.41!1.57!ONECUT2;;chr18:6414849..6414876,-!p2@L3MBTL4!0.41!1.57!L3MBTL4;;chr19:13213954..13214021,-!p4@LYL1!0.41!1.57!LYL1;;chr19:22193731..22193751,-!p1@ZNF208!0.41!1.57!ZNF208;;chr10:119302352..119302362,+!p9@EMX2!0.41!1.57!EMX2;;chr10:31610584..31610601,+!p19@ZEB1!0.41!1.57!ZEB1;;chr12:106976837..106976850,+!p5@RFX4!0.41!1.57!RFX4;;chr12:125003168..125003180,-!p15@NCOR2!0.41!1.57!NCOR2;;chr12:26278030..26278039,-!p7@BHLHE41!0.41!1.57!BHLHE41;;chr12:56414795..56414836,+!p4@IKZF4!0.41!1.57!IKZF4;;chr13:72440493..72440513,-!p12@DACH1!0.41!1.57!DACH1;;chr2:166428839..166428859,+!p2@CSRNP3!0.41!1.57!CSRNP3;;chr2:180726058..180726098,-!p3@ZNF385B!0.41!1.57!ZNF385B;;chr2:2328418..2328441,-!p13@MYT1L!0.41!1.57!MYT1L;;chr2:60781041..60781064,-!p13@BCL11A!0.41!1.57!BCL11A;;chr3:111314186..111314204,-!p1@ZBED2!0.41!1.57!ZBED2;;chr3:114173964..114173975,-!p36@ZBTB20!0.41!1.57!ZBTB20;;chr3:141106643..141106681,+!p16@ZBTB38!0.41!1.57!ZBTB38;;chrX:84499056..84499078,+!p3@ZNF711!0.41!1.57!ZNF711;;chrX:82763261..82763262,+!p4@POU3F4!0.41!1.57!POU3F4;;chrX:118740008..118740045,-!p3@NKRF!0.41!1.57!NKRF;;chr6:28321827..28321856,-!p5@ZNF323!0.41!1.57!ZNF323;;chr6:42419928..42419963,-!p6@TRERF1!0.41!1.57!TRERF1;;chr7:14029034..14029087,-!p5@ETV1!0.41!1.57!ETV1;;chr8:53322411..53322422,-!p6@ST18!0.41!1.57!ST18;;chr8:93115274..93115323,-!p4@RUNX1T1!0.41!1.57!RUNX1T1;;chr1:151804244..151804310,-!p1@RORC!0.41!1.57!RORC;;chr1:2159755..2159789,+!p5@SKI!0.41!1.57!SKI;;chr20:21494684..21494708,-!p1@NKX2-2!0.41!1.57!NKX2-2;;chr20:62795758..62795784,+!p4@MYT1!0.41!1.57!MYT1;;chr15:100106155..100106243,+!p1@MEF2A!0.40!60.18!MEF2A;;chr4:26322419..26322479,+!p2@RBPJ!0.40!27.13!RBPJ;;chr19:35168567..35168620,+!p1@ZNF302!0.40!25.93!ZNF302;;chr6:33168126..33168180,-!p2@RXRB!0.40!23.76!RXRB;;chr9:4300050..4300118,-!p1@GLIS3!0.40!14.47!GLIS3;;chr9:125667518..125667588,-!p1@RC3H2!0.40!14.35!RC3H2;;chr18:72922811..72922827,+!p1@TSHZ1!0.40!10.61!TSHZ1;;chr19:58258202..58258226,+!p3@ZNF776!0.40!10.37!ZNF776;;chrX:46404811..46404869,-!p1@ZNF674!0.40!7.84!ZNF674;;chr19:44809143..44809187,-!p1@ZNF235!0.40!6.27!ZNF235;;chr19:23941680..23941704,-!p1@ZNF681!0.40!6.03!ZNF681;;chr19:37862054..37862110,+!p1@ZNF527!0.40!5.67!ZNF527;;chr19:52552051..52552113,-!p1@ZNF432!0.40!4.10!ZNF432;;chr12:104531823..104531849,-!p5@NFYB!0.40!4.10!NFYB;;chr3:52001396..52001425,-!p4@PCBP4!0.40!3.38!PCBP4;;chr19:37407172..37407217,-!p2@ZNF829!0.40!3.38!ZNF829;;chr17:38465413..38465438,+!p5@RARA!0.40!2.89!RARA;;chr19:13134772..13134822,+!p2@NFIX!0.40!2.65!NFIX;;chr19:35417844..35417877,+!p2@ZNF30!0.40!2.65!ZNF30;;chr6:91006575..91006602,-!p2@BACH2!0.40!2.65!BACH2;;chr13:46549840..46549882,-!p4@ZC3H13!0.40!2.53!ZC3H13;;chr5:124082279..124082319,-!p3@ZNF608!0.40!2.05!ZNF608;;chr18:53255839..53255854,-!p13@TCF4!0.40!1.93!TCF4;;chr13:73636516..73636532,+!p3@KLF5!0.40!1.81!KLF5;;chr19:53606636..53606692,-!p1@ZNF160!0.39!40.52!ZNF160;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.39!23.52!ZBTB41;;chr19:53400852..53400962,-!p1@ZNF320!0.39!21.59!ZNF320;;chr17:36861496..36861586,+!p1@MLLT6!0.39!20.98!MLLT6;;chr10:38383255..38383324,+!p1@ZNF37A!0.39!20.62!ZNF37A;;chr19:37157713..37157760,-!p1@ZNF461!0.39!12.18!ZNF461;;chr17:16557128..16557174,-!p1@ZNF624!0.39!9.65!ZNF624;;chr19:58962974..58963001,+!p1@ZNF324B!0.39!9.29!ZNF324B;;chr1:14075865..14075896,+!p3@PRDM2!0.39!8.80!PRDM2;;chr19:12721616..12721640,-!p2@ZNF490!0.39!6.99!ZNF490;;chr19:23870007..23870022,-!p2@ZNF675!0.39!6.63!ZNF675;;chr3:71007886..71007887,-!p8@FOXP1!0.39!6.51!FOXP1;; | |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.49!310.54!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!291.60!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.17!146.40!OLIG1;;chr3:181429704..181429722,+!p1@SOX2!2.00!99.25!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.98!94.31!SOX10;;chrX:82763292..82763317,+!p1@POU3F4!1.84!68.26!POU3F4;;chr9:114287433..114287513,+!p1@ZNF483!1.81!157.86!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.80!61.38!ARNT2;;chr17:53342311..53342400,+!p1@HLF!1.76!65.00!HLF;;chr15:80733570..80733659,+!p2@ARNT2!1.74!53.54!ARNT2;;chr14:29235961..29236008,+!p1@FOXG1!1.74!53.54!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.68!67.41!CSRNP3;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.46!ZMAT4;;chr21:34398234..34398250,+!p1@OLIG2!1.62!41.00!OLIG2;;chr12:54779511..54779577,-!p5@ZNF385A!1.62!40.40!ZNF385A;;chr12:106976678..106976708,+!p2@RFX4!1.60!38.95!RFX4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.59!37.99!SMARCE1;;chr16:1031762..1031781,+!p1@SOX8!1.59!37.87!SOX8;;chr12:26277817..26277863,-!p2@BHLHE41!1.58!50.05!BHLHE41;;chr3:181429741..181429767,+!p2@SOX2!1.58!37.26!SOX2;;chr17:38219209..38219230,+!p1@THRA!1.57!444.28!THRA;;chr2:60781201..60781258,-!p3@BCL11A!1.56!34.97!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.55!71.03!C11orf9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.55!34.73!POU3F3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.37!HIF3A;;chr6:19837592..19837621,+!p1@ID4!1.49!177.28!ID4;;chr18:55102598..55102623,+!p1@ONECUT2!1.49!30.15!ONECUT2;;chr14:29234581..29234601,+!p2@FOXG1!1.46!28.10!FOXG1;;chr13:72441315..72441454,-!p1@DACH1!1.44!51.74!DACH1;;chr9:77112244..77112262,+!p1@RORB!1.43!29.06!RORB;;chr2:2334997..2335053,-!p1@MYT1L!1.42!25.20!MYT1L;;chrX:85969626..85969664,+!p1@DACH2!1.41!24.72!DACH2;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.36!ARNT2;;chr21:34442540..34442560,+!p2@OLIG1!1.39!23.28!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!38.23!ZEB2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.83!NPAS3;;chr12:26277956..26277980,-!p1@BHLHE41!1.35!75.73!BHLHE41;;chr17:7492684..7492778,-!p2@SOX15!1.34!43.05!SOX15;;chr16:85932760..85932775,+!p1@IRF8!1.34!21.10!IRF8;;chr22:41763274..41763318,+!p3@TEF!1.34!20.74!TEF;;chr17:70117153..70117174,+!p1@SOX9!1.33!204.77!SOX9;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.84!KLF15;;chr12:106976774..106976788,+!p1@RFX4!1.32!19.78!RFX4;;chr11:47400078..47400106,-!p1@SPI1!1.32!19.66!SPI1;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.66!HIF3A;;chr2:45168875..45168916,+!p1@SIX3!1.31!19.42!SIX3;;chr8:53322304..53322340,-!p1@ST18!1.30!19.17!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!19.17!ZBED1;;chr14:29236269..29236285,+!p3@FOXG1!1.30!18.81!FOXG1;;chr2:2328299..2328363,-!p3@MYT1L!1.28!18.21!MYT1L;;chr15:31658288..31658338,+!p4@KLF13!1.28!18.21!KLF13;;chr9:126774018..126774055,+!p1@LHX2!1.28!18.21!LHX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.28!17.85!KCNIP3;;chr3:25469724..25469773,+!p1@RARB!1.26!24.60!RARB;;chr10:64134120..64134183,+!p1@ZNF365!1.26!20.86!ZNF365;;chr7:96654133..96654150,-!p1@DLX5!1.26!17.12!DLX5;;chrX:82763265..82763283,+!p2@POU3F4!1.26!17.00!POU3F4;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr2:73520667..73520683,-!p1@EGR4!1.25!16.76!EGR4;;chr18:55102628..55102646,+!p2@ONECUT2!1.25!16.64!ONECUT2;;chr3:114173720..114173794,-!p6@ZBTB20!1.24!16.28!ZBTB20;;chr7:63505799..63505904,+!p1@ZNF727!1.23!15.92!ZNF727;;chr4:57547751..57547764,-!p6@HOPX!1.23!15.80!HOPX;;chr11:113930425..113930471,+!p1@ZBTB16!1.22!22.31!ZBTB16;;chr11:31832862..31832884,-!p2@PAX6!1.22!15.68!PAX6;;chr19:57352109..57352153,-!p2@ZIM2!1.21!15.20!ZIM2;;chr10:134599649..134599653,-!p1@NKX6-2!1.19!14.59!NKX6-2;;chr2:2330039..2330072,-!p6@MYT1L!1.19!14.47!MYT1L;;chr19:38085768..38085821,+!p1@ZNF540!1.18!21.10!ZNF540;;chr6:108487289..108487302,+!p1@NR2E1!1.18!14.11!NR2E1;;chr7:150974206..150974255,-!p1@SMARCD3!1.17!84.66!SMARCD3;;chr1:61548069..61548102,+!p3@NFIA!1.17!33.41!NFIA;;chr8:80679993..80680011,-!p1@HEY1!1.17!19.78!HEY1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.87!RUNX1T1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.17!13.75!POU3F3;;chr14:58797974..58798011,+!p3@ARID4A!1.16!13.39!ARID4A;;chr3:114819124..114819200,-!p3@ZBTB20!1.15!30.51!ZBTB20;;chr17:38219143..38219154,+!p2@THRA!1.14!45.71!THRA;;chr17:38219184..38219195,+!p3@THRA!1.14!25.81!THRA;;chr11:8102846..8102892,+!p1@TUB!1.14!18.09!TUB;;chr19:53193731..53193767,-!p1@ZNF83!1.13!110.83!ZNF83;;chr4:57522166..57522260,-!p2@HOPX!1.13!14.47!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.13!12.42!FOXJ1;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.30!NPAS3;;chr2:45168834..45168847,+!p2@SIX3!1.12!12.30!SIX3;;chr2:45168997..45169020,+!p4@SIX3!1.11!11.94!SIX3;;chr16:67197654..67197716,+!p3@HSF4!1.11!11.94!HSF4;;chr3:126076264..126076305,-!p2@KLF15!1.10!16.28!KLF15;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.66!MEIS2;;chr15:61521417..61521460,-!p2@RORA!1.09!25.20!RORA;;chr8:53322347..53322378,-!p2@ST18!1.09!11.22!ST18;;chr9:3525867..3525902,-!p3@RFX3!1.08!38.35!RFX3;;chr8:30890810..30890880,-!p1@PURG!1.08!11.09!PURG;;chr10:119302232..119302265,+!p1@EMX2!1.08!10.97!EMX2;;chr14:21994337..21994442,-!p1@SALL2!1.07!29.67!SALL2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.07!23.03!ZNF395;;chr8:93074848..93074871,-!p3@RUNX1T1!1.07!10.73!RUNX1T1;;chr2:42721205..42721307,+!p4@MTA3!1.07!10.73!MTA3;;chr1:8585945..8586056,-!p3@RERE!1.06!35.21!RERE;;chr8:22550530..22550609,-!p2@EGR3!1.05!10.25!EGR3;;chr1:2461692..2461710,-!p1@HES5!1.04!10.01!HES5;;chr3:141105235..141105307,+!p7@ZBTB38!1.04!9.89!ZBTB38;;chr11:125034640..125034655,+!p1@PKNOX2!1.04!9.89!PKNOX2;;chr3:33482052..33482116,-!p2@UBP1!1.03!14.95!UBP1;;chr6:126112039..126112062,+!p8@NCOA7!1.03!11.82!NCOA7;;chr13:72441074..72441172,-!p2@DACH1!1.03!9.65!DACH1;;chr13:73633131..73633149,+!p1@KLF5!1.02!103.35!KLF5;;chr2:2328095..2328125,-!p7@MYT1L!1.02!9.53!MYT1L;;chr1:40105299..40105326,-!p1@HEYL!1.02!9.53!HEYL;;chr15:80696666..80696700,+!p4@ARNT2!1.02!9.53!ARNT2;;chr6:126070769..126070801,+!p1@HEY2!1.01!10.61!HEY2;;chr8:80680024..80680046,-!p2@HEY1!1.01!10.49!HEY1;;chr10:48355030..48355090,+!p1@ZNF488!1.00!11.70!ZNF488;;chr3:147127142..147127168,+!p1@ZIC1!1.00!8.92!ZIC1;;chr19:38720294..38720348,-!p1@DPF1!0.99!11.09!DPF1;;chr14:33408072..33408114,+!p2@NPAS3!0.99!10.49!NPAS3;;chr5:71803177..71803255,-!p1@ZNF366!0.99!8.68!ZNF366;;chr5:178368186..178368238,+!p1@ZNF454!0.98!15.56!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!0.98!13.27!ZNF540;;chr12:24715376..24715432,-!p1@SOX5!0.98!10.97!SOX5;;chr15:37392576..37392589,-!p12@MEIS2!0.98!10.49!MEIS2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.98!8.44!ZSCAN1;;chr2:42721689..42721723,+!p6@MTA3!0.98!8.44!MTA3;;chr22:41777927..41777971,+!p1@TEF!0.97!72.00!TEF;;chr17:38256822..38256851,-!p1@NR1D1!0.97!67.17!NR1D1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.37!ZNF737;;chr20:62680984..62680999,-!p1@SOX18!0.97!11.22!SOX18;;chr21:39870339..39870443,-!p1@ERG!0.97!8.32!ERG;;chr3:187463179..187463201,-!p2@BCL6!0.96!34.25!BCL6;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:22005197..22005261,-!p3@SALL2!0.96!8.20!SALL2;;chr16:51185318..51185348,-!p2@SALL1!0.96!8.08!SALL1;;chr7:113726357..113726443,+!p1@FOXP2!0.95!13.75!FOXP2;;chr19:49139477..49139552,-!p4@DBP!0.95!10.13!DBP;;chr18:6414884..6414942,-!p1@L3MBTL4!0.95!10.01!L3MBTL4;;chr4:57547454..57547469,-!p1@HOPX!0.95!7.96!HOPX;;chr22:41763452..41763466,+!p2@TEF!0.95!7.84!TEF;;chr7:64337960..64337986,+!p6@ZNF273!0.95!7.84!ZNF273;;chr12:24102576..24102623,-!p2@SOX5!0.95!7.84!SOX5;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.53!ZFHX4;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.49!STAT4;;chr2:113057415..113057477,+!p3@ZC3H6!0.94!10.13!ZC3H6;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.20!ZNF334;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.78!TCF12;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.82!ZNF385A;;chr1:38512457..38512474,-!p1@POU3F1!0.93!8.20!POU3F1;;chr16:8963020..8963054,-!p6@CARHSP1!0.93!7.60!CARHSP1;;chr16:67197776..67197831,+!p4@HSF4!0.92!7.36!HSF4;;chr7:64337988..64338010,+!p8@ZNF273!0.92!7.36!ZNF273;;chr9:126774058..126774081,+!p3@LHX2!0.92!7.36!LHX2;;chr2:175199675..175199688,+!p1@SP9!0.92!7.36!SP9;;chr3:114173859..114173873,-!p15@ZBTB20!0.92!7.36!ZBTB20;;chr7:96634878..96634900,+!p2@DLX6!0.92!7.24!DLX6;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.25!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!0.91!7.12!PKNOX2;;chr12:103351444..103351461,+!p1@ASCL1!0.91!7.12!ASCL1;;chr14:58798013..58798071,+!p2@ARID4A!0.91!7.12!ARID4A;;chr6:15401104..15401166,+!p5@JARID2!0.91!7.12!JARID2;;chr2:45169193..45169219,+!p3@SIX3!0.91!7.12!SIX3;;chr15:61521462..61521482,-!p4@RORA!0.91!7.12!RORA;;chr16:67198633..67198671,+!p1@HSF4!0.91!7.12!HSF4;;chr9:3525727..3525828,-!p2@RFX3!0.90!18.45!RFX3;;chr15:37391271..37391376,-!p5@MEIS2!0.90!13.39!MEIS2;;chr19:57019215..57019250,+!p1@ZNF471!0.90!10.61!ZNF471;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.89!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.90!8.80!ZNF793;;chr2:45168959..45168990,+!p6@SIX3!0.90!6.99!SIX3;;chr7:73038839..73038862,-!p1@MLXIPL!0.90!6.87!MLXIPL;;chr13:45010939..45011033,-!p1@TSC22D1!0.89!471.29!TSC22D1;;chr7:64023441..64023462,-!p1@ZNF680!0.89!56.56!ZNF680;;chr9:3525910..3525955,-!p4@RFX3!0.89!21.22!RFX3;;chrX:106959661..106959763,-!p4@TSC22D3!0.89!20.62!TSC22D3;;chrX:118739835..118739862,-!p1@NKRF!0.89!7.48!NKRF;;chr11:85393886..85393913,-!p3@CREBZF!0.89!6.75!CREBZF;;chr15:80696410..80696477,+!p6@ARNT2!0.89!6.75!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!0.89!6.75!NFIX;;chr7:50344289..50344323,+!p1@IKZF1!0.89!6.75!IKZF1;;chr7:96635448..96635470,+!p5@DLX6!0.89!6.75!DLX6;;chr20:3388541..3388575,-!p2@C20orf194!0.88!27.13!C20orf194;;chr16:79634624..79634642,-!p1@MAF!0.88!26.89!MAF;;chr2:60780607..60780624,-!p2@BCL11A!0.88!20.98!BCL11A;;chrX:70315688..70315709,+!p1@FOXO4!0.88!15.92!FOXO4;;chr7:64023410..64023428,-!p2@ZNF680!0.88!10.61!ZNF680;;chr15:37390482..37390572,-!p7@MEIS2!0.88!9.29!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.88!8.08!M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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001873;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010122,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%252c%2520adult%252c%2520donor10252.CNhs12321.10164-103B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10164-103B2 | |id=FF:10164-103B2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010164 | |is_a=EFO:0002091;;FF:0000002;;FF:0010164 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12321 | |||
|library_id_phase_based=2:CNhs12321 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10164 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10164 | |||
|name=caudate nucleus, adult, donor10252 | |name=caudate nucleus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 62: | ||
|profile_cagescan=NCig10035,,, | |profile_cagescan=NCig10035,,, | ||
|profile_hcage=CNhs12321,LSID913,release011,COMPLETED | |profile_hcage=CNhs12321,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 80: | ||
|rna_weight_ug=34.25775 | |rna_weight_ug=34.25775 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 102: | ||
|top_motifs=RFX1:3.97175482342;RFX2..5_RFXANK_RFXAP:3.64544407433;MYFfamily:3.48263504082;OCT4_SOX2{dimer}:3.44705555159;REST:3.37911675436;ZFP161:3.30445291975;EGR1..3:3.3009324538;HBP1_HMGB_SSRP1_UBTF:3.23659739417;AHR_ARNT_ARNT2:3.14322991611;NHLH1,2:3.10008124133;PRDM1:2.98687000341;MED-1{core}:2.98125010622;ARID5B:2.83864110819;RREB1:2.76841387688;CUX2:2.65440622588;ZBTB6:2.6391000515;SOX2:2.63895781193;MTE{core}:2.62091518657;PRRX1,2:2.57613833364;GTF2I:2.53903690789;ATF2:2.33500679466;DBP:2.32104832072;PAX5:2.28033591437;MZF1:2.2752053433;FOXD3:2.273471206;TFAP2B:2.26826958626;MTF1:2.13430986268;BREu{core}:2.12076182831;FOXM1:2.10259643387;ADNP_IRX_SIX_ZHX:2.04113697876;GATA4:2.01740559095;HIC1:1.96828061427;ALX1:1.93255068612;NRF1:1.93212679757;NKX6-1,2:1.92620447759;NFIL3:1.92463010072;CDC5L:1.90731523935;TLX2:1.88830372693;SOX{8,9,10}:1.88351671705;ONECUT1,2:1.87255250416;PATZ1:1.86097573346;MAZ:1.84119471543;POU6F1:1.82648880475;SOX5:1.82397206215;NKX2-3_NKX2-5:1.82162050117;RBPJ:1.81618331117;POU3F1..4:1.78747124153;HOXA9_MEIS1:1.75191795005;NKX3-2:1.68263738134;LMO2:1.66970033105;IKZF2:1.60980478687;POU5F1:1.46713070888;TGIF1:1.45479611071;FOXP1:1.43495498863;FOX{F1,F2,J1}:1.42135208614;GFI1B:1.40723167677;FOXP3:1.386421239;HOX{A4,D4}:1.38478919414;KLF4:1.35564706169;SP1:1.35488817538;EP300:1.27492963821;PAX4:1.24092861317;PAX6:1.23711963891;SMAD1..7,9:1.2290848925;T:1.20739699215;ZNF143:1.17446354099;FOXN1:1.15416526006;PAX1,9:1.13025675728;LEF1_TCF7_TCF7L1,2:1.0949187807;HMGA1,2:1.08720663694;AR:1.07305828742;NFIX:1.03394172991;CRX:1.0110876222;NANOG:0.994833373561;MYOD1:0.991104663635;BPTF:0.974170414151;ZNF384:0.942465665648;MAFB:0.931198259414;CREB1:0.927986303704;PBX1:0.908326512242;POU1F1:0.907691845941;SOX17:0.860780921507;ZBTB16:0.850144145882;FOX{I1,J2}:0.838640101914;STAT1,3:0.822483923694;HAND1,2:0.771363907703;VSX1,2:0.769522481604;GCM1,2:0.769402373041;EBF1:0.766657062297;GFI1:0.756684719811;XBP1:0.756606085422;ZNF423:0.714268969241;STAT2,4,6:0.688040117199;MYBL2:0.672760502278;SREBF1,2:0.662774701352;GTF2A1,2:0.644824734206;JUN:0.642226393389;HSF1,2:0.640207283913;ZIC1..3:0.61970363557;TOPORS:0.618346308498;GZF1:0.612049337185;TFDP1:0.605415590561;TFAP2{A,C}:0.605111490629;FOX{D1,D2}:0.59525821534;ZEB1:0.48881919606;HOX{A6,A7,B6,B7}:0.45440070457;TEF:0.452480133633;HMX1:0.382671517814;YY1:0.294706941589;FOXO1,3,4:0.277486013443;PAX2:0.252390663708;ZNF238:0.237762105473;LHX3,4:0.223764219486;MEF2{A,B,C,D}:0.11225992826;NR3C1:0.0930556059392;NFY{A,B,C}:0.0929973289931;TLX1..3_NFIC{dimer}:0.0795459353879;RORA:0.0722619324133;FOXQ1:0.0328744869979;UFEwm:0.0286624996041;CDX1,2,4:0.0156840135201;IRF7:-0.00803854912265;ATF4:-0.0434581098388;ATF5_CREB3:-0.0604014606635;PDX1:-0.147662383106;AIRE:-0.169764460621;SPZ1:-0.173211394033;NFATC1..3:-0.176853806967;XCPE1{core}:-0.196625955154;IRF1,2:-0.248675733533;ESRRA:-0.289344796258;PAX3,7:-0.302434136581;SNAI1..3:-0.34087679676;bHLH_family:-0.358214258675;NFE2L2:-0.377620779651;FOXL1:-0.400594919388;SPI1:-0.400808413233;CEBPA,B_DDIT3:-0.451386944827;HIF1A:-0.504850409775;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550072318092;SPIB:-0.602343764429;IKZF1:-0.609139153158;DMAP1_NCOR{1,2}_SMARC:-0.621580385141;NFE2:-0.635368096072;PITX1..3:-0.718954625815;ETS1,2:-0.733050326497;GATA6:-0.79030955319;TBX4,5:-0.817288736383;FOXA2:-0.860870022232;NKX3-1:-0.898558698495;TFAP4:-0.906274400786;HNF1A:-0.923098258543;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.945970071261;EVI1:-0.979313622951;ATF6:-0.98026160694;NFE2L1:-0.996706779087;RXR{A,B,G}:-1.01151692168;FOS_FOS{B,L1}_JUN{B,D}:-1.03121544527;ELK1,4_GABP{A,B1}:-1.03669684464;TFCP2:-1.05398327274;NANOG{mouse}:-1.08371132835;TEAD1:-1.08422839136;FOSL2:-1.09891100716;BACH2:-1.10304828688;TP53:-1.11667761657;HNF4A_NR2F1,2:-1.15567048532;ZNF148:-1.19451018058;RUNX1..3:-1.2015532963;NR5A1,2:-1.21352722058;NFKB1_REL_RELA:-1.21471380382;ELF1,2,4:-1.2948410279;E2F1..5:-1.34062956736;NKX2-2,8:-1.34086664912;MYB:-1.36170163162;PAX8:-1.37868257075;ALX4:-1.43480441842;NR1H4:-1.44520583521;HLF:-1.47096198073;GLI1..3:-1.48841776774;ESR1:-1.50307563867;TBP:-1.52291814197;POU2F1..3:-1.56348894958;RXRA_VDR{dimer}:-1.60491677131;SRF:-1.86413611851;TAL1_TCF{3,4,12}:-1.89125288471;STAT5{A,B}:-1.8987991289;NKX2-1,4:-1.9266389183;HES1:-2.12207130608;NR6A1:-2.17728042645;HOX{A5,B5}:-2.65058963514;PPARG:-2.79079045759;EN1,2:-2.86071810384 | |top_motifs=RFX1:3.97175482342;RFX2..5_RFXANK_RFXAP:3.64544407433;MYFfamily:3.48263504082;OCT4_SOX2{dimer}:3.44705555159;REST:3.37911675436;ZFP161:3.30445291975;EGR1..3:3.3009324538;HBP1_HMGB_SSRP1_UBTF:3.23659739417;AHR_ARNT_ARNT2:3.14322991611;NHLH1,2:3.10008124133;PRDM1:2.98687000341;MED-1{core}:2.98125010622;ARID5B:2.83864110819;RREB1:2.76841387688;CUX2:2.65440622588;ZBTB6:2.6391000515;SOX2:2.63895781193;MTE{core}:2.62091518657;PRRX1,2:2.57613833364;GTF2I:2.53903690789;ATF2:2.33500679466;DBP:2.32104832072;PAX5:2.28033591437;MZF1:2.2752053433;FOXD3:2.273471206;TFAP2B:2.26826958626;MTF1:2.13430986268;BREu{core}:2.12076182831;FOXM1:2.10259643387;ADNP_IRX_SIX_ZHX:2.04113697876;GATA4:2.01740559095;HIC1:1.96828061427;ALX1:1.93255068612;NRF1:1.93212679757;NKX6-1,2:1.92620447759;NFIL3:1.92463010072;CDC5L:1.90731523935;TLX2:1.88830372693;SOX{8,9,10}:1.88351671705;ONECUT1,2:1.87255250416;PATZ1:1.86097573346;MAZ:1.84119471543;POU6F1:1.82648880475;SOX5:1.82397206215;NKX2-3_NKX2-5:1.82162050117;RBPJ:1.81618331117;POU3F1..4:1.78747124153;HOXA9_MEIS1:1.75191795005;NKX3-2:1.68263738134;LMO2:1.66970033105;IKZF2:1.60980478687;POU5F1:1.46713070888;TGIF1:1.45479611071;FOXP1:1.43495498863;FOX{F1,F2,J1}:1.42135208614;GFI1B:1.40723167677;FOXP3:1.386421239;HOX{A4,D4}:1.38478919414;KLF4:1.35564706169;SP1:1.35488817538;EP300:1.27492963821;PAX4:1.24092861317;PAX6:1.23711963891;SMAD1..7,9:1.2290848925;T:1.20739699215;ZNF143:1.17446354099;FOXN1:1.15416526006;PAX1,9:1.13025675728;LEF1_TCF7_TCF7L1,2:1.0949187807;HMGA1,2:1.08720663694;AR:1.07305828742;NFIX:1.03394172991;CRX:1.0110876222;NANOG:0.994833373561;MYOD1:0.991104663635;BPTF:0.974170414151;ZNF384:0.942465665648;MAFB:0.931198259414;CREB1:0.927986303704;PBX1:0.908326512242;POU1F1:0.907691845941;SOX17:0.860780921507;ZBTB16:0.850144145882;FOX{I1,J2}:0.838640101914;STAT1,3:0.822483923694;HAND1,2:0.771363907703;VSX1,2:0.769522481604;GCM1,2:0.769402373041;EBF1:0.766657062297;GFI1:0.756684719811;XBP1:0.756606085422;ZNF423:0.714268969241;STAT2,4,6:0.688040117199;MYBL2:0.672760502278;SREBF1,2:0.662774701352;GTF2A1,2:0.644824734206;JUN:0.642226393389;HSF1,2:0.640207283913;ZIC1..3:0.61970363557;TOPORS:0.618346308498;GZF1:0.612049337185;TFDP1:0.605415590561;TFAP2{A,C}:0.605111490629;FOX{D1,D2}:0.59525821534;ZEB1:0.48881919606;HOX{A6,A7,B6,B7}:0.45440070457;TEF:0.452480133633;HMX1:0.382671517814;YY1:0.294706941589;FOXO1,3,4:0.277486013443;PAX2:0.252390663708;ZNF238:0.237762105473;LHX3,4:0.223764219486;MEF2{A,B,C,D}:0.11225992826;NR3C1:0.0930556059392;NFY{A,B,C}:0.0929973289931;TLX1..3_NFIC{dimer}:0.0795459353879;RORA:0.0722619324133;FOXQ1:0.0328744869979;UFEwm:0.0286624996041;CDX1,2,4:0.0156840135201;IRF7:-0.00803854912265;ATF4:-0.0434581098388;ATF5_CREB3:-0.0604014606635;PDX1:-0.147662383106;AIRE:-0.169764460621;SPZ1:-0.173211394033;NFATC1..3:-0.176853806967;XCPE1{core}:-0.196625955154;IRF1,2:-0.248675733533;ESRRA:-0.289344796258;PAX3,7:-0.302434136581;SNAI1..3:-0.34087679676;bHLH_family:-0.358214258675;NFE2L2:-0.377620779651;FOXL1:-0.400594919388;SPI1:-0.400808413233;CEBPA,B_DDIT3:-0.451386944827;HIF1A:-0.504850409775;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.550072318092;SPIB:-0.602343764429;IKZF1:-0.609139153158;DMAP1_NCOR{1,2}_SMARC:-0.621580385141;NFE2:-0.635368096072;PITX1..3:-0.718954625815;ETS1,2:-0.733050326497;GATA6:-0.79030955319;TBX4,5:-0.817288736383;FOXA2:-0.860870022232;NKX3-1:-0.898558698495;TFAP4:-0.906274400786;HNF1A:-0.923098258543;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.945970071261;EVI1:-0.979313622951;ATF6:-0.98026160694;NFE2L1:-0.996706779087;RXR{A,B,G}:-1.01151692168;FOS_FOS{B,L1}_JUN{B,D}:-1.03121544527;ELK1,4_GABP{A,B1}:-1.03669684464;TFCP2:-1.05398327274;NANOG{mouse}:-1.08371132835;TEAD1:-1.08422839136;FOSL2:-1.09891100716;BACH2:-1.10304828688;TP53:-1.11667761657;HNF4A_NR2F1,2:-1.15567048532;ZNF148:-1.19451018058;RUNX1..3:-1.2015532963;NR5A1,2:-1.21352722058;NFKB1_REL_RELA:-1.21471380382;ELF1,2,4:-1.2948410279;E2F1..5:-1.34062956736;NKX2-2,8:-1.34086664912;MYB:-1.36170163162;PAX8:-1.37868257075;ALX4:-1.43480441842;NR1H4:-1.44520583521;HLF:-1.47096198073;GLI1..3:-1.48841776774;ESR1:-1.50307563867;TBP:-1.52291814197;POU2F1..3:-1.56348894958;RXRA_VDR{dimer}:-1.60491677131;SRF:-1.86413611851;TAL1_TCF{3,4,12}:-1.89125288471;STAT5{A,B}:-1.8987991289;NKX2-1,4:-1.9266389183;HES1:-2.12207130608;NR6A1:-2.17728042645;HOX{A5,B5}:-2.65058963514;PPARG:-2.79079045759;EN1,2:-2.86071810384 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10164-103B2;search_select_hide=table117:FF:10164-103B2 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | caudate nucleus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12321 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12321
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12321
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0391 |
| 10 | 10 | 0.0446 |
| 100 | 100 | 0.332 |
| 101 | 101 | 0.51 |
| 102 | 102 | 0.717 |
| 103 | 103 | 0.119 |
| 104 | 104 | 0.0874 |
| 105 | 105 | 0.122 |
| 106 | 106 | 0.0229 |
| 107 | 107 | 0.0755 |
| 108 | 108 | 0.767 |
| 109 | 109 | 0.00496 |
| 11 | 11 | 0.0137 |
| 110 | 110 | 0.0599 |
| 111 | 111 | 0.087 |
| 112 | 112 | 0.397 |
| 113 | 113 | 0.74 |
| 114 | 114 | 0.132 |
| 115 | 115 | 0.898 |
| 116 | 116 | 0.18 |
| 117 | 117 | 0.0131 |
| 118 | 118 | 0.185 |
| 119 | 119 | 0.124 |
| 12 | 12 | 0.924 |
| 120 | 120 | 0.161 |
| 121 | 121 | 0.269 |
| 122 | 122 | 0.831 |
| 123 | 123 | 0.823 |
| 124 | 124 | 0.332 |
| 125 | 125 | 0.281 |
| 126 | 126 | 0.0551 |
| 127 | 127 | 0.335 |
| 128 | 128 | 0.103 |
| 129 | 129 | 0.463 |
| 13 | 13 | 0.00342 |
| 130 | 130 | 0.417 |
| 131 | 131 | 0.168 |
| 132 | 132 | 0.652 |
| 133 | 133 | 0.0232 |
| 134 | 134 | 0.77 |
| 135 | 135 | 0.19 |
| 136 | 136 | 0.0165 |
| 137 | 137 | 0.606 |
| 138 | 138 | 0.925 |
| 139 | 139 | 0.152 |
| 14 | 14 | 0.795 |
| 140 | 140 | 0.348 |
| 141 | 141 | 0.339 |
| 142 | 142 | 0.55 |
| 143 | 143 | 0.0196 |
| 144 | 144 | 0.861 |
| 145 | 145 | 0.169 |
| 146 | 146 | 0.456 |
| 147 | 147 | 0.924 |
| 148 | 148 | 0.0984 |
| 149 | 149 | 0.21 |
| 15 | 15 | 0.084 |
| 150 | 150 | 0.177 |
| 151 | 151 | 0.499 |
| 152 | 152 | 0.0741 |
| 153 | 153 | 0.826 |
| 154 | 154 | 0.514 |
| 155 | 155 | 0.686 |
| 156 | 156 | 0.57 |
| 157 | 157 | 0.548 |
| 158 | 158 | 0.763 |
| 159 | 159 | 0.0493 |
| 16 | 16 | 0.064 |
| 160 | 160 | 0.197 |
| 161 | 161 | 0.331 |
| 162 | 162 | 0.943 |
| 163 | 163 | 0.901 |
| 164 | 164 | 0.041 |
| 165 | 165 | 0.0803 |
| 166 | 166 | 0.81 |
| 167 | 167 | 0.619 |
| 168 | 168 | 0.289 |
| 169 | 169 | 0.00748 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.134 |
| 19 | 19 | 0.12 |
| 2 | 2 | 0.787 |
| 20 | 20 | 0.199 |
| 21 | 21 | 0.1 |
| 22 | 22 | 0.182 |
| 23 | 23 | 0.25 |
| 24 | 24 | 0.0663 |
| 25 | 25 | 0.51 |
| 26 | 26 | 4.05408e-4 |
| 27 | 27 | 0.646 |
| 28 | 28 | 0.728 |
| 29 | 29 | 0.018 |
| 3 | 3 | 0.0569 |
| 30 | 30 | 0.869 |
| 31 | 31 | 0.776 |
| 32 | 32 | 0.0294 |
| 33 | 33 | 0.0699 |
| 34 | 34 | 0.649 |
| 35 | 35 | 0.638 |
| 36 | 36 | 0.12 |
| 37 | 37 | 0.0347 |
| 38 | 38 | 0.273 |
| 39 | 39 | 0.306 |
| 4 | 4 | 0.714 |
| 40 | 40 | 0.0295 |
| 41 | 41 | 0.318 |
| 42 | 42 | 0.278 |
| 43 | 43 | 0.112 |
| 44 | 44 | 0.231 |
| 45 | 45 | 0.646 |
| 46 | 46 | 0.0657 |
| 47 | 47 | 0.0666 |
| 48 | 48 | 0.0569 |
| 49 | 49 | 0.148 |
| 5 | 5 | 0.365 |
| 50 | 50 | 0.345 |
| 51 | 51 | 0.386 |
| 52 | 52 | 0.438 |
| 53 | 53 | 0.952 |
| 54 | 54 | 0.348 |
| 55 | 55 | 0.467 |
| 56 | 56 | 0.489 |
| 57 | 57 | 0.264 |
| 58 | 58 | 0.288 |
| 59 | 59 | 0.0723 |
| 6 | 6 | 0.907 |
| 60 | 60 | 0.0553 |
| 61 | 61 | 0.129 |
| 62 | 62 | 0.166 |
| 63 | 63 | 0.151 |
| 64 | 64 | 0.157 |
| 65 | 65 | 0.187 |
| 66 | 66 | 0.125 |
| 67 | 67 | 0.336 |
| 68 | 68 | 0.195 |
| 69 | 69 | 0.32 |
| 7 | 7 | 0.0659 |
| 70 | 70 | 0.0431 |
| 71 | 71 | 0.0118 |
| 72 | 72 | 0.4 |
| 73 | 73 | 0.0348 |
| 74 | 74 | 0.596 |
| 75 | 75 | 0.0394 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.152 |
| 78 | 78 | 0.00133 |
| 79 | 79 | 0.219 |
| 8 | 8 | 0.0761 |
| 80 | 80 | 0.651 |
| 81 | 81 | 0.562 |
| 82 | 82 | 0.428 |
| 83 | 83 | 0.0876 |
| 84 | 84 | 0.843 |
| 85 | 85 | 0.153 |
| 86 | 86 | 0.217 |
| 87 | 87 | 9.8541e-4 |
| 88 | 88 | 0.775 |
| 89 | 89 | 0.377 |
| 9 | 9 | 0.415 |
| 90 | 90 | 0.0499 |
| 91 | 91 | 0.324 |
| 92 | 92 | 0.361 |
| 93 | 93 | 0.945 |
| 94 | 94 | 0.133 |
| 95 | 95 | 0.0263 |
| 96 | 96 | 0.811 |
| 97 | 97 | 0.729 |
| 98 | 98 | 0.179 |
| 99 | 99 | 0.43 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12321
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010164 human caudate nucleus - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)
