FF:10155-103A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005583 | ||
|HumanCAGEScanFiles=NCig10027;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369;DRZ012334;DRZ013719 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.48!302.39!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.28!187.69!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.18!150.53!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.60!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.97!187.69!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.96!90.30!SOX2;;chr8:53322304..53322340,-!p1@ST18!1.92!81.98!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!82.20!BHLHE41;;chr2:145277882..145277967,-!p3@ZEB2!1.70!82.86!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.68!46.59!NKX6-2;;chr19:46801639..46801699,+!p1@HIF3A!1.67!46.15!HIF3A;;chr12:26277956..26277980,-!p1@BHLHE41!1.66!154.19!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.66!62.79!ZBTB16;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!44.15!POU3F3;;chr12:54779511..54779577,-!p5@ZNF385A!1.65!43.48!ZNF385A;;chr3:147127142..147127168,+!p1@ZIC1!1.63!41.49!ZIC1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.40!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.59!38.05!RFX4;;chr12:106976678..106976708,+!p2@RFX4!1.58!37.38!RFX4;;chr15:42749722..42749739,-!p2@ZFP106!1.55!60.46!ZFP106;;chr10:48355030..48355090,+!p1@ZNF488!1.54!42.60!ZNF488;;chr11:47400078..47400106,-!p1@SPI1!1.54!33.39!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.53!32.72!IRF8;;chr14:57277178..57277203,-!p1@OTX2!1.53!32.50!OTX2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.39!OLIG2;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.28!SOX8;;chr17:74137321..74137337,-!p1@FOXJ1!1.49!30.06!FOXJ1;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.84!SOX2;;chr8:53322347..53322378,-!p2@ST18!1.46!27.95!ST18;;chr1:61548069..61548102,+!p3@NFIA!1.43!61.23!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.43!32.28!KLF15;;chr21:34442540..34442560,+!p2@OLIG1!1.41!24.85!OLIG1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.83!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.52!ZBED1;;chr4:81118647..81118666,+!p1@PRDM8!1.36!28.84!PRDM8;;chr3:147127177..147127194,+!p2@ZIC1!1.35!21.30!ZIC1;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.85!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.32!26.51!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.31!19.41!NFIX;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.75!NPAS3;;chr4:57547454..57547469,-!p1@HOPX!1.30!18.75!HOPX;;chr17:37764128..37764258,-!p1@NEUROD2!1.29!18.41!NEUROD2;;chr6:19837592..19837621,+!p1@ID4!1.27!106.05!ID4;;chr11:31832862..31832884,-!p2@PAX6!1.27!17.75!PAX6;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.75!HIF3A;;chr7:63505799..63505904,+!p1@ZNF727!1.27!17.53!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.26!171.39!SOX9;;chr16:79634624..79634642,-!p1@MAF!1.25!64.89!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.25!16.64!TFEC;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.07!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.23!15.97!ZNF323;;chr2:166326200..166326216,+!p1@CSRNP3!1.22!22.85!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.64!POU3F3;;chr20:50159198..50159299,-!p1@NFATC2!1.21!22.41!NFATC2;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.31!ZIC2;;chr11:113930291..113930339,+!p2@ZBTB16!1.20!24.40!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!1.19!14.64!SALL1;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.72!ZBTB20;;chr19:13135582..13135600,+!p3@NFIX!1.18!14.09!NFIX;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.92!DPF3;;chr17:7492684..7492778,-!p2@SOX15!1.17!29.29!SOX15;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.02!BCL6;;chr14:33408072..33408114,+!p2@NPAS3!1.15!15.42!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.98!HEYL;;chr14:33403648..33403710,+!p3@NPAS3!1.14!12.76!NPAS3;;chr17:53342311..53342400,+!p1@HLF!1.13!14.42!HLF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.13!12.42!SMARCE1;;chr22:41763452..41763466,+!p2@TEF!1.12!12.20!TEF;;chr3:114343039..114343085,-!p8@ZBTB20!1.12!12.20!ZBTB20;;chr2:182545234..182545252,-!p1@NEUROD1!1.12!12.09!NEUROD1;;chr3:114343768..114343822,-!p1@ZBTB20!1.11!51.58!ZBTB20;;chr3:126076264..126076305,-!p2@KLF15!1.11!16.75!KLF15;;chr11:8102846..8102892,+!p1@TUB!1.11!16.53!TUB;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.87!ZBTB16;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.76!PLEK;;chr16:51185318..51185348,-!p2@SALL1!1.10!11.65!SALL1;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.43!PKNOX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.09!11.31!KCNIP3;;chr21:39870339..39870443,-!p1@ERG!1.09!11.20!ERG;;chr9:77112244..77112262,+!p1@RORB!1.08!12.42!RORB;;chr5:71803177..71803255,-!p1@ZNF366!1.08!11.09!ZNF366;;chr13:72441315..72441454,-!p1@DACH1!1.07!21.52!DACH1;;chr11:47400062..47400077,-!p2@SPI1!1.07!10.87!SPI1;;chr2:223163706..223163730,-!p1@PAX3!1.07!10.87!PAX3;;chr12:54778471..54778528,-!p1@ZNF385A!1.07!10.76!ZNF385A;;chr19:30863271..30863338,+!p1@ZNF536!1.07!10.76!ZNF536;;chr19:38085768..38085821,+!p1@ZNF540!1.06!15.86!ZNF540;;chr8:30890810..30890880,-!p1@PURG!1.06!10.54!PURG;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.53!IKZF2;;chr12:103351444..103351461,+!p1@ASCL1!1.05!10.21!ASCL1;;chr1:244214577..24421459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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.48!302.39!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.28!187.69!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.18!150.53!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.60!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.97!187.69!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.96!90.30!SOX2;;chr8:53322304..53322340,-!p1@ST18!1.92!81.98!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!82.20!BHLHE41;;chr2:145277882..145277967,-!p3@ZEB2!1.70!82.86!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.68!46.59!NKX6-2;;chr19:46801639..46801699,+!p1@HIF3A!1.67!46.15!HIF3A;;chr12:26277956..26277980,-!p1@BHLHE41!1.66!154.19!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.66!62.79!ZBTB16;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!44.15!POU3F3;;chr12:54779511..54779577,-!p5@ZNF385A!1.65!43.48!ZNF385A;;chr3:147127142..147127168,+!p1@ZIC1!1.63!41.49!ZIC1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.40!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.59!38.05!RFX4;;chr12:106976678..106976708,+!p2@RFX4!1.58!37.38!RFX4;;chr15:42749722..42749739,-!p2@ZFP106!1.55!60.46!ZFP106;;chr10:48355030..48355090,+!p1@ZNF488!1.54!42.60!ZNF488;;chr11:47400078..47400106,-!p1@SPI1!1.54!33.39!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.53!32.72!IRF8;;chr14:57277178..57277203,-!p1@OTX2!1.53!32.50!OTX2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.39!OLIG2;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.28!SOX8;;chr17:74137321..74137337,-!p1@FOXJ1!1.49!30.06!FOXJ1;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.84!SOX2;;chr8:53322347..53322378,-!p2@ST18!1.46!27.95!ST18;;chr1:61548069..61548102,+!p3@NFIA!1.43!61.23!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.43!32.28!KLF15;;chr21:34442540..34442560,+!p2@OLIG1!1.41!24.85!OLIG1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.83!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.52!ZBED1;;chr4:81118647..81118666,+!p1@PRDM8!1.36!28.84!PRDM8;;chr3:147127177..147127194,+!p2@ZIC1!1.35!21.30!ZIC1;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.85!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.32!26.51!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.31!19.41!NFIX;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.75!NPAS3;;chr4:57547454..57547469,-!p1@HOPX!1.30!18.75!HOPX;;chr17:37764128..37764258,-!p1@NEUROD2!1.29!18.41!NEUROD2;;chr6:19837592..19837621,+!p1@ID4!1.27!106.05!ID4;;chr11:31832862..31832884,-!p2@PAX6!1.27!17.75!PAX6;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.75!HIF3A;;chr7:63505799..63505904,+!p1@ZNF727!1.27!17.53!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.26!171.39!SOX9;;chr16:79634624..79634642,-!p1@MAF!1.25!64.89!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.25!16.64!TFEC;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.07!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.23!15.97!ZNF323;;chr2:166326200..166326216,+!p1@CSRNP3!1.22!22.85!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.64!POU3F3;;chr20:50159198..50159299,-!p1@NFATC2!1.21!22.41!NFATC2;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.31!ZIC2;;chr11:113930291..113930339,+!p2@ZBTB16!1.20!24.40!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!1.19!14.64!SALL1;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.72!ZBTB20;;chr19:13135582..13135600,+!p3@NFIX!1.18!14.09!NFIX;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.92!DPF3;;chr17:7492684..7492778,-!p2@SOX15!1.17!29.29!SOX15;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.02!BCL6;;chr14:33408072..33408114,+!p2@NPAS3!1.15!15.42!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.98!HEYL;;chr14:33403648..33403710,+!p3@NPAS3!1.14!12.76!NPAS3;;chr17:53342311..53342400,+!p1@HLF!1.13!14.42!HLF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.13!12.42!SMARCE1;;chr22:41763452..41763466,+!p2@TEF!1.12!12.20!TEF;;chr3:114343039..114343085,-!p8@ZBTB20!1.12!12.20!ZBTB20;;chr2:182545234..182545252,-!p1@NEUROD1!1.12!12.09!NEUROD1;;chr3:114343768..114343822,-!p1@ZBTB20!1.11!51.58!ZBTB20;;chr3:126076264..126076305,-!p2@KLF15!1.11!16.75!KLF15;;chr11:8102846..8102892,+!p1@TUB!1.11!16.53!TUB;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.87!ZBTB16;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.76!PLEK;;chr16:51185318..51185348,-!p2@SALL1!1.10!11.65!SALL1;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.43!PKNOX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.09!11.31!KCNIP3;;chr21:39870339..39870443,-!p1@ERG!1.09!11.20!ERG;;chr9:77112244..77112262,+!p1@RORB!1.08!12.42!RORB;;chr5:71803177..71803255,-!p1@ZNF366!1.08!11.09!ZNF366;;chr13:72441315..72441454,-!p1@DACH1!1.07!21.52!DACH1;;chr11:47400062..47400077,-!p2@SPI1!1.07!10.87!SPI1;;chr2:223163706..223163730,-!p1@PAX3!1.07!10.87!PAX3;;chr12:54778471..54778528,-!p1@ZNF385A!1.07!10.76!ZNF385A;;chr19:30863271..30863338,+!p1@ZNF536!1.07!10.76!ZNF536;;chr19:38085768..38085821,+!p1@ZNF540!1.06!15.86!ZNF540;;chr8:30890810..30890880,-!p1@PURG!1.06!10.54!PURG;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.53!IKZF2;;chr12:103351444..103351461,+!p1@ASCL1!1.05!10.21!ASCL1;;chr1:244214577..244214593,+!p1@ZNF238!1.05!10.09!ZNF238;;chr17:38219209..38219230,+!p1@THRA!1.04!132.45!THRA;;chr12:52437488..52437507,+!p2@NR4A1!1.03!9.76!NR4A1;;chr2:178128250..178128293,-!p6@NFE2L2!1.02!24.29!NFE2L2;;chr10:64134120..64134183,+!p1@ZNF365!1.02!11.54!ZNF365;;chr12:106976656..106976672,+!p4@RFX4!1.02!9.54!RFX4;;chr7:50344289..50344323,+!p1@IKZF1!1.02!9.54!IKZF1;;chr8:40755333..40755352,-!p1@ZMAT4!1.02!9.54!ZMAT4;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.43!IRX2;;chr3:147111505..147111529,+!p6@ZIC1!1.02!9.43!ZIC1;;chr16:79634595..79634620,-!p2@MAF!1.01!16.97!MAF;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.32!IRX2;;chr6:126070769..126070801,+!p1@HEY2!1.00!10.43!HEY2;;chr2:95963120..95963136,+!p2@KCNIP3!1.00!8.99!KCNIP3;;chr4:4861385..4861398,+!p1@MSX1!0.99!26.73!MSX1;;chr18:52989031..52989079,-!p2@TCF4!0.99!21.19!TCF4;;chr9:102584159..102584174,+!p2@NR4A3!0.98!15.64!NR4A3;;chr17:46622440..46622477,-!p5@HOXB2!0.98!9.54!HOXB2;;chr9:14314946..14314983,-!p8@NFIB!0.98!8.65!NFIB;;chr19:21512144..21512191,-!p2@ZNF708!0.97!39.82!ZNF708;;chr18:22932080..22932170,-!p1@ZNF521!0.97!36.50!ZNF521;;chr1:61924375..61924380,+!p6@NFIA!0.96!11.65!NFIA;;chr20:62680984..62680999,-!p1@SOX18!0.96!10.76!SOX18;;chr11:31832807..31832823,-!p4@PAX6!0.96!8.10!PAX6;;chr1:61547894..61547968,+!p2@NFIA!0.95!23.96!NFIA;;chr19:21512115..21512135,-!p3@ZNF708!0.95!16.42!ZNF708;;chr2:177053386..177053402,+!p1@HOXD1!0.95!7.99!HOXD1;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.88!ZIC1;;chr5:92918919..92918942,+!p1@NR2F1!0.94!35.94!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.94!8.87!PRRX1;;chr3:114173720..114173794,-!p6@ZBTB20!0.94!7.77!ZBTB20;;chrX:136648279..136648295,+!p1@ZIC3!0.94!7.77!ZIC3;;chr14:21994337..21994442,-!p1@SALL2!0.93!21.63!SALL2;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.87!ZNF385A;;chr12:125003087..125003141,-!p4@NCOR2!0.93!9.87!NCOR2;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.54!ASCL1;;chr17:47439437..47439533,-!p1@ZNF652!0.92!61.57!ZNF652;;chr19:53636125..53636178,-!p1@ZNF415!0.91!20.85!ZNF415;;chr8:106330656..106330684,+!p1@ZFPM2!0.91!19.52!ZFPM2;;chrX:70315688..70315709,+!p1@FOXO4!0.91!17.08!FOXO4;;chr18:47814186..47814232,-!p2@CXXC1!0.91!15.09!CXXC1;;chr7:64023410..64023428,-!p2@ZNF680!0.91!11.43!ZNF680;;chr8:10588010..10588030,-!p1@SOX7!0.91!7.21!SOX7;;chr19:57352109..57352153,-!p2@ZIM2!0.91!7.21!ZIM2;;chr7:27142290..27142310,-!p1@HOXA2!0.91!7.10!HOXA2;;chr8:53322411..53322422,-!p6@ST18!0.91!7.10!ST18;;chrX:82763292..82763317,+!p1@POU3F4!0.91!7.10!POU3F4;;chr11:31839488..31839515,-!p3@PAX6!0.91!7.10!PAX6;;chr9:4300050..4300118,-!p1@GLIS3!0.90!47.81!GLIS3;;chr19:21512202..21512225,-!p1@ZNF708!0.90!37.05!ZNF708;;chr9:3525727..3525828,-!p2@RFX3!0.90!18.53!RFX3;;chr15:57511609..57511651,+!p2@TCF12!0.90!11.98!TCF12;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.76!FOXF1;;chr5:92919100..92919135,+!p3@NR2F1!0.90!8.54!NR2F1;;chr17:53344945..53344977,+!p2@HLF!0.90!6.99!HLF;;chr5:3595961..3595975,+!p3@IRX1!0.90!6.88!IRX1;;chr6:126112074..126112144,+!p1@NCOA7!0.89!96.18!NCOA7;;chr5:88178983..88179012,-!p1@MEF2C!0.89!54.36!MEF2C;;chr20:51588873..51588953,+!p1@TSHZ2!0.89!8.99!TSHZ2;;chr16:4323246..4323299,-!p5@TFAP4!0.89!6.77!TFAP4;;chr16:67198683..67198698,+!p2@HSF4!0.89!6.77!HSF4;;chr15:60884706..60884743,-!p1@RORA!0.88!35.72!RORA;;chr5:178368186..178368238,+!p1@ZNF454!0.88!12.31!ZNF454;;chr10:48359344..48359376,+!p2@ZNF488!0.88!6.66!ZNF488;;chr2:2334997..2335053,-!p1@MYT1L!0.88!6.54!MYT1L;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.54!MECOM;;chr19:57183114..57183145,-!p1@ZNF835!0.87!7.32!ZNF835;;chr14:22005197..22005261,-!p3@SALL2!0.87!6.43!SALL2;;chr9:3525848..3525863,-!p6@RFX3!0.87!6.43!RFX3;;chr19:57019215..57019250,+!p1@ZNF471!0.86!9.54!ZNF471;;chr10:111987079..111987115,+!p3@MXI1!0.86!8.76!MXI1;;chr3:141105705..141105770,+!p4@ZBTB38!0.86!7.65!ZBTB38;;chr6:15401104..15401166,+!p5@JARID2!0.86!6.21!JARID2;;chr6:99282475..99282501,+!p1@POU3F2!0.86!6.21!POU3F2;;chr8:80679993..80680011,-!p1@HEY1!0.85!8.99!HEY1;;chr6:126112039..126112062,+!p8@NCOA7!0.85!7.43!NCOA7;;chr11:34654104..34654118,+!p5@EHF!0.85!6.10!EHF;;chr7:44143925..44143970,+!p1@AEBP1!0.84!139.88!AEBP1;;chr7:64023441..64023462,-!p1@ZNF680!0.84!50.47!ZNF680;;chr5:172483347..172483407,+!p1@C5orf41!0.84!47.92!CREBRF;;chr15:61521417..61521460,-!p2@RORA!0.84!13.87!RORA;;chr12:24715376..24715432,-!p1@SOX5!0.84!7.65!SOX5;;chr12:24102576..24102623,-!p2@SOX5!0.84!5.99!SOX5;;chr4:57522598..57522664,-!p3@HOPX!0.84!5.99!HOPX;;chr15:80696666..80696700,+!p4@ARNT2!0.84!5.88!ARNT2;;chr7:73038839..73038862,-!p1@MLXIPL!0.84!5.88!MLXIPL;;chr3:114866084..114866118,-!p2@ZBTB20!0.83!22.19!ZBTB20;;chr5:92918894..92918912,+!p2@NR2F1!0.83!19.86!NR2F1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.83!8.99!ZNF853;;chr3:22414241..22414278,-!p5@ZNF385D!0.83!5.77!ZNF385D;;chr12:26276197..26276214,-!p8@BHLHE41!0.83!5.77!BHLHE41;;chr13:100623375..100623425,-!p1@ZIC5!0.83!5.77!ZIC5;;chr17:38219143..38219154,+!p2@THRA!0.82!21.08!THRA;;chr9:3525867..3525902,-!p3@RFX3!0.82!20.74!RFX3;;chr16:79633894..79633954,-!p3@MA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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001896;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10155-103A2 | |id=FF:10155-103A2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010038 | |is_a=EFO:0002091;;FF:0000002;;FF:0010038 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12315 | |||
|library_id_phase_based=2:CNhs12315 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10155 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10155 | |||
|name=medulla oblongata, adult, donor10252 | |name=medulla oblongata, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 62: | ||
|profile_cagescan=NCig10027,,, | |profile_cagescan=NCig10027,,, | ||
|profile_hcage=CNhs12315,LSID913,release011,COMPLETED | |profile_hcage=CNhs12315,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 80: | ||
|rna_weight_ug=51.3536 | |rna_weight_ug=51.3536 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 102: | ||
|top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899 | |top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10155-103A2;search_select_hide=table117:FF:10155-103A2 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | medulla oblongata, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12315 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12315
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12315
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.038 |
| 10 | 10 | 0.0378 |
| 100 | 100 | 0.358 |
| 101 | 101 | 0.705 |
| 102 | 102 | 0.96 |
| 103 | 103 | 0.0502 |
| 104 | 104 | 0.0961 |
| 105 | 105 | 0.235 |
| 106 | 106 | 0.0299 |
| 107 | 107 | 0.153 |
| 108 | 108 | 0.789 |
| 109 | 109 | 0.00392 |
| 11 | 11 | 0.00798 |
| 110 | 110 | 0.0525 |
| 111 | 111 | 0.0547 |
| 112 | 112 | 0.391 |
| 113 | 113 | 0.31 |
| 114 | 114 | 0.0672 |
| 115 | 115 | 0.897 |
| 116 | 116 | 0.21 |
| 117 | 117 | 0.0108 |
| 118 | 118 | 0.152 |
| 119 | 119 | 0.23 |
| 12 | 12 | 0.621 |
| 120 | 120 | 0.132 |
| 121 | 121 | 0.718 |
| 122 | 122 | 0.989 |
| 123 | 123 | 0.834 |
| 124 | 124 | 0.283 |
| 125 | 125 | 0.361 |
| 126 | 126 | 0.0673 |
| 127 | 127 | 0.406 |
| 128 | 128 | 0.211 |
| 129 | 129 | 0.519 |
| 13 | 13 | 0.00584 |
| 130 | 130 | 0.417 |
| 131 | 131 | 0.0232 |
| 132 | 132 | 0.427 |
| 133 | 133 | 0.165 |
| 134 | 134 | 0.567 |
| 135 | 135 | 0.272 |
| 136 | 136 | 0.00496 |
| 137 | 137 | 0.829 |
| 138 | 138 | 0.729 |
| 139 | 139 | 0.0878 |
| 14 | 14 | 0.97 |
| 140 | 140 | 0.569 |
| 141 | 141 | 0.478 |
| 142 | 142 | 0.963 |
| 143 | 143 | 0.00847 |
| 144 | 144 | 0.954 |
| 145 | 145 | 0.212 |
| 146 | 146 | 0.694 |
| 147 | 147 | 0.788 |
| 148 | 148 | 0.188 |
| 149 | 149 | 0.107 |
| 15 | 15 | 0.0452 |
| 150 | 150 | 0.126 |
| 151 | 151 | 0.723 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.948 |
| 154 | 154 | 0.547 |
| 155 | 155 | 0.477 |
| 156 | 156 | 0.256 |
| 157 | 157 | 0.35 |
| 158 | 158 | 0.248 |
| 159 | 159 | 0.00729 |
| 16 | 16 | 0.0429 |
| 160 | 160 | 0.204 |
| 161 | 161 | 0.2 |
| 162 | 162 | 0.785 |
| 163 | 163 | 0.737 |
| 164 | 164 | 0.0132 |
| 165 | 165 | 0.215 |
| 166 | 166 | 0.722 |
| 167 | 167 | 0.632 |
| 168 | 168 | 0.72 |
| 169 | 169 | 0.0156 |
| 17 | 17 | 0.0825 |
| 18 | 18 | 0.0353 |
| 19 | 19 | 0.336 |
| 2 | 2 | 0.944 |
| 20 | 20 | 0.144 |
| 21 | 21 | 0.0304 |
| 22 | 22 | 0.311 |
| 23 | 23 | 0.563 |
| 24 | 24 | 0.117 |
| 25 | 25 | 0.565 |
| 26 | 26 | 7.91909e-4 |
| 27 | 27 | 0.637 |
| 28 | 28 | 0.822 |
| 29 | 29 | 0.00595 |
| 3 | 3 | 0.05 |
| 30 | 30 | 0.625 |
| 31 | 31 | 0.911 |
| 32 | 32 | 0.0104 |
| 33 | 33 | 0.084 |
| 34 | 34 | 0.785 |
| 35 | 35 | 0.442 |
| 36 | 36 | 0.169 |
| 37 | 37 | 0.0506 |
| 38 | 38 | 0.437 |
| 39 | 39 | 0.418 |
| 4 | 4 | 0.632 |
| 40 | 40 | 0.0783 |
| 41 | 41 | 0.178 |
| 42 | 42 | 0.227 |
| 43 | 43 | 0.124 |
| 44 | 44 | 0.112 |
| 45 | 45 | 0.821 |
| 46 | 46 | 0.0252 |
| 47 | 47 | 0.0389 |
| 48 | 48 | 0.0462 |
| 49 | 49 | 0.246 |
| 5 | 5 | 0.63 |
| 50 | 50 | 0.498 |
| 51 | 51 | 0.282 |
| 52 | 52 | 0.787 |
| 53 | 53 | 0.668 |
| 54 | 54 | 0.407 |
| 55 | 55 | 0.772 |
| 56 | 56 | 0.585 |
| 57 | 57 | 0.261 |
| 58 | 58 | 0.347 |
| 59 | 59 | 0.0922 |
| 6 | 6 | 0.937 |
| 60 | 60 | 0.117 |
| 61 | 61 | 0.136 |
| 62 | 62 | 0.166 |
| 63 | 63 | 0.24 |
| 64 | 64 | 0.143 |
| 65 | 65 | 0.287 |
| 66 | 66 | 0.0918 |
| 67 | 67 | 0.328 |
| 68 | 68 | 0.116 |
| 69 | 69 | 0.202 |
| 7 | 7 | 0.119 |
| 70 | 70 | 0.022 |
| 71 | 71 | 0.008 |
| 72 | 72 | 0.46 |
| 73 | 73 | 0.0472 |
| 74 | 74 | 0.94 |
| 75 | 75 | 0.0173 |
| 76 | 76 | 0.176 |
| 77 | 77 | 0.297 |
| 78 | 78 | 4.63738e-4 |
| 79 | 79 | 0.266 |
| 8 | 8 | 0.0514 |
| 80 | 80 | 0.827 |
| 81 | 81 | 0.499 |
| 82 | 82 | 0.637 |
| 83 | 83 | 0.0806 |
| 84 | 84 | 0.467 |
| 85 | 85 | 0.318 |
| 86 | 86 | 0.175 |
| 87 | 87 | 0.00105 |
| 88 | 88 | 0.74 |
| 89 | 89 | 0.158 |
| 9 | 9 | 0.58 |
| 90 | 90 | 0.057 |
| 91 | 91 | 0.552 |
| 92 | 92 | 0.514 |
| 93 | 93 | 0.756 |
| 94 | 94 | 0.101 |
| 95 | 95 | 0.0257 |
| 96 | 96 | 0.981 |
| 97 | 97 | 0.769 |
| 98 | 98 | 0.152 |
| 99 | 99 | 0.683 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12315
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010038 human medulla oblongata - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
