FF:10075-102A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00004910 | ||
|accession_numbers=CAGE;DRX008680;DRR009552;DRZ000977;DRZ002362;DRZ012327;DRZ013712 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0002171,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0006518,UBERON:0008949,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000101,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0002167 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010019 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.59!389.80!HOPX;;chr6:134210243..134210257,+!p1@TCF21!2.24!172.32!TCF21;;chr20:62680984..62680999,-!p1@SOX18!2.08!156.17!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.97!92.79!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.94!85.33!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!1.92!100.66!FOXF1;;chr3:128212033..128212051,-!p1@GATA2!1.81!63.38!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.85!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.68!53.44!PPARG;;chr5:2751762..2751784,-!p1@IRX2!1.68!46.39!IRX2;;chr3:169381420..169381535,-!p1@MECOM!1.67!53.44!MECOM;;chr11:34642612..34642646,+!p1@EHF!1.66!45.15!EHF;;chr2:46524537..46524553,+!p1@EPAS1!1.63!3832.54!EPAS1;;chr16:54320617..54320643,-!p3@IRX3!1.63!53.44!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.01!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.34!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!1.61!39.77!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.61!39.35!TFCP2L1;;chr21:39870339..39870443,-!p1@ERG!1.55!34.80!ERG;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.38!ELF3;;chr16:54320646..54320672,-!p2@IRX3!1.51!47.22!IRX3;;chr16:85932760..85932775,+!p1@IRF8!1.49!30.24!IRF8;;chr2:68592406..68592424,+!p1@PLEK!1.48!29.00!PLEK;;chr17:74137321..74137337,-!p1@FOXJ1!1.47!28.58!FOXJ1;;chr5:2751785..2751808,-!p2@IRX2!1.44!26.51!IRX2;;chr11:47400062..47400077,-!p2@SPI1!1.43!26.10!SPI1;;chr17:53342311..53342400,+!p1@HLF!1.41!28.17!HLF;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.85!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.39!42.25!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.38!22.78!TFEC;;chr1:151804244..151804310,-!p1@RORC!1.38!22.78!RORC;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.50!DACH1;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.95!FOXA1;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.54!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.87!NR4A3;;chr2:46524865..46524870,+!p9@EPAS1!1.34!24.44!EPAS1;;chr8:55370487..55370503,+!p1@SOX17!1.34!20.71!SOX17;;chr17:59529743..59529798,+!p1@TBX4!1.33!20.30!TBX4;;chr1:201979703..201979721,+!p2@ELF3!1.33!20.30!ELF3;;chr12:52445218..52445237,+!p1@NR4A1!1.31!239.02!NR4A1;;chr22:41763452..41763466,+!p2@TEF!1.31!19.47!TEF;;chr2:180610565..180610578,-!p9@ZNF385B!1.31!19.47!ZNF385B;;chr8:102504651..102504683,+!p1@GRHL2!1.30!19.05!GRHL2;;chr15:66994523..66994541,+!p5@SMAD6!1.29!18.64!SMAD6;;chr16:79634624..79634642,-!p1@MAF!1.28!70.42!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.23!DACH1;;chrX:106960285..106960299,-!p1@TSC22D3!1.26!447.38!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.40!KDM5D;;chr14:74256787..74256858,-!p6@C14orf43!1.26!17.40!C14orf43;;chr17:59477233..59477263,+!p1@TBX2!1.23!49.29!TBX2;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.74!SPDEF;;chr2:85981107..85981120,+!p3@ATOH8!1.22!15.74!ATOH8;;chr14:36988564..36988601,-!p7@NKX2-1!1.22!15.74!NKX2-1;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.34!ZFP106;;chr19:16435625..16435682,+!p1@KLF2!1.20!466.43!KLF2;;chr11:61520075..61520136,+!p1@C11orf9!1.20!31.48!C11orf9;;chr17:59477197..59477212,+!p2@TBX2!1.20!25.68!TBX2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.30!FOXF2;;chr2:145277882..145277967,-!p3@ZEB2!1.19!24.85!ZEB2;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.50!ZNF366;;chr16:54320675..54320715,-!p1@IRX3!1.17!29.41!IRX3;;chr11:125034640..125034655,+!p1@PKNOX2!1.17!13.67!PKNOX2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.47!NFATC2;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.54!FOXQ1;;chr19:16435705..16435726,+!p3@KLF2!1.15!13.26!KLF2;;chr15:66994561..66994597,+!p2@SMAD6!1.14!30.65!SMAD6;;chr17:6926362..6926377,+!p1@BCL6B!1.14!12.84!BCL6B;;chr11:113930401..113930422,+!p3@ZBTB16!1.14!12.84!ZBTB16;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.84!SPI1;;chr15:96873984..96873999,+!p3@NR2F2!1.13!92.38!NR2F2;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.31!OSR1;;chr7:128577972..128578047,+!p1@IRF5!1.11!18.64!IRF5;;chr7:50344289..50344323,+!p1@IKZF1!1.11!12.01!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.10!11.60!IKZF1;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.61!EGR2;;chr3:71355163..71355209,-!p5@FOXP1!1.09!15.74!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.09!11.18!NR3C2;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.18!SPI1;;chr6:391743..391759,+!p1@IRF4!1.09!11.18!IRF4;;chr2:46612334..46612349,+!p6@EPAS1!1.08!14.50!EPAS1;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.05!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.65!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!1.07!10.77!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!1.07!10.77!MEOX2;;chr14:36989427..36989442,-!p1@NKX2-1!1.07!10.77!NKX2-1;;chrX:131623044..131623089,-!p1@MBNL3!1.06!43.50!MBNL3;;chr7:14028488..14028516,-!p2@ETV1!1.06!11.60!ETV1;;chr7:27170359..27170381,-!p1@HOXA4!1.06!10.36!HOXA4;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.36!SPIB;;chr17:36105042..36105060,-!p1@HNF1B!1.06!10.36!HNF1B;;chr2:157189180..157189290,-!p1@NR4A2!1.05!53.44!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!1.05!39.77!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.98!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.50!KLF15;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.48!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.51!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.40!FOXP2;;chr16:79634464..79634493,-!p5@MAF!1.04!9.94!MAF;;chr11:111249993..111250006,-!p1@POU2AF1!1.04!9.94!POU2AF1;;chr12:52448420..52448460,+!p5@NR4A1!1.04!9.94!NR4A1;;chr1:47697539..47697573,-!p3@TAL1!1.04!9.94!TAL1;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.60!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!1.01!1190.94!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.60!KLF15;;chr2:145277640..145277771,-!p1@ZEB2!1.00!124.27!ZEB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.00!33.14!BHLHE41;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!29.83!ZMAT1;;chr1:10754477..10754517,-!p1@CASZ1!1.00!15.33!CASZ1;;chr7:149470540..149470596,-!p2@ZNF467!1.00!12.01!ZNF467;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.11!ZFY;;chr14:36990061..36990072,-!p11@NKX2-1!1.00!9.11!NKX2-1;;chr9:110252035..110252057,-!p1@KLF4!0.99!142.08!KLF4;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!56.34!CSRNP1;;chr15:66994663..66994680,+!p1@SMAD6!0.99!21.13!SMAD6;;chr12:52448338..52448401,+!p7@NR4A1!0.99!8.70!NR4A1;;chr18:77155922..77155939,+!p1@NFATC1!0.97!23.20!NFATC1;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.28!FOXA2;;chr2:180427261..180427297,-!p6@ZNF385B!0.97!8.28!ZNF385B;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.28!ZNF727;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.74!RUNX3;;chr2:46524878..46524891,+!p3@EPAS1!0.95!14.08!EPAS1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.84!MEF2C;;chr2:231090433..231090469,+!p1@SP140!0.95!7.87!SP140;;chr3:169381183..169381205,-!p4@MECOM!0.95!7.87!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.87!SPI1;;chr16:54964740..54964789,+!p1@IRX5!0.94!11.18!IRX5;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.84!CEBPB;;chr2:46602879..46602899,+!p8@EPAS1!0.93!9.11!EPAS1;;chr3:114343039..114343085,-!p8@ZBTB20!0.93!7.46!ZBTB20;;chr20:48808064..48808086,+!p15@CEBPB!0.93!7.46!CEBPB;;chr12:52437488..52437507,+!p2@NR4A1!0.93!7.46!NR4A1;;chr16:54320322..54320343,-!p7@IRX3!0.93!7.46!IRX3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.46!ZBTB7C;;chr19:16435735..16435773,+!p4@KLF2!0.93!7.46!KLF2;;chr20:39317868..39317884,-!p1@MAFB!0.92!91.13!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.92!21.13!TSC22D3;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.30!ELK3;;chr16:54320158..54320200,-!p5@IRX3!0.92!10.77!IRX3;;chr17:59477275..59477286,+!p3@TBX2!0.92!9.94!TBX2;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.28!TCF4;;chr18:53254566..53254567,-!p8@TCF4!0.91!12.01!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!0.91!7.04!ZNF750;;chr12:52448515..52448538,+!p9@NR4A1!0.91!7.04!NR4A1;;chr5:122424918..122424944,+!p1@PRDM6!0.91!7.04!PRDM6;;chr5:122424955..122424988,+!p2@PRDM6!0.91!7.04!PRDM6;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.91!7.04!HOXA5;;chr3:12392932..12392962,+!p8@PPARG!0.91!7.04!PPARG;;chr20:30433396..30433414,-!p1@FOXS1!0.91!7.04!FOXS1;;chr3:69788576..69788648,+!p1@MITF!0.90!38.52!MITF;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.94!PROX1;;chr2:46602901..46602926,+!p7@EPAS1!0.90!9.53!EPAS1;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.70!SATB1;;chr1:61548225..61548299,+!p1@NFIA!0.89!91.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.17!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.89!27.34!HHEX;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.44!MEIS1;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.94!HEY1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.88!741.90!ZFP36L2;;chr3:71179699..71179744,-!p2@FOXP1!0.88!51.78!FOXP1;;chrX:106960249..106960260,-!p5@TSC22D3!0.88!10.77!TSC22D3;;chr9:124991204..124991246,-!p1@LHX6!0.88!6.63!LHX6;;chr6:152011654..152011682,+!p1@ESR1!0.88!6.63!ESR1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.63!HES2;;chr3:168865250..168865272,-!p5@MECOM!0.88!6.63!MECOM;;chr11:34535297..34535317,-!p1@ELF5!0.88!6.63!ELF5;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.28!NCOR2;;chr12:24715376..24715432,-!p1@SOX5!0.87!8.28!SOX5;;chr6:106546808..106546833,+!p3@PRDM1!0.87!8.28!PRDM1;;chr8:106330696..106330719,+!p2@ZFPM2!0.87!8.28!ZFPM2;;chr12:54694758..54694805,-!p1@NFE2!0.87!7.87!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.86!792.44!FOS;;chr3:71630980..71631110,-!p3@FOXP1!0.86!22.78!FOXP1;;chr5:139494712..139494759,+!p5@PURA!0.86!10.77!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.86!6.21!IRX1;;chr2:85981073..85981091,+!p5@ATOH8!0.86!6.21!ATOH8;;chr14:36989940..36989957,-!p2@NKX2-1!0.86!6.21!NKX2-1;;chr19:54058073..54058088,+!p1@ZNF331!0.86!6.21!ZNF331;;chr5:88178983..88179012,-!p1@MEF2C!0.85!50.54!MEF2C;;chr13:41240717..41240735,-!p2@FOXO1!0.85!43.91!FOXO1;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.60!GATA2;;chr10:94449675..94449694,+!p2@HHEX!0.85!16.98!HHEX;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.18!GATA6;;chr2:85980951..85981004,+!p1@ATOH8!0.85!10.36!ATOH8;;chr14:75746722..75746777,+!p2@FOS!0.85!7.87!FOS;;chr3:24536253..24536328,-!p1@THRB!0.84!11.60!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.84!8.28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| |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.59!389.80!HOPX;;chr6:134210243..134210257,+!p1@TCF21!2.24!172.32!TCF21;;chr20:62680984..62680999,-!p1@SOX18!2.08!156.17!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.97!92.79!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.94!85.33!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!1.92!100.66!FOXF1;;chr3:128212033..128212051,-!p1@GATA2!1.81!63.38!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.85!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.68!53.44!PPARG;;chr5:2751762..2751784,-!p1@IRX2!1.68!46.39!IRX2;;chr3:169381420..169381535,-!p1@MECOM!1.67!53.44!MECOM;;chr11:34642612..34642646,+!p1@EHF!1.66!45.15!EHF;;chr2:46524537..46524553,+!p1@EPAS1!1.63!3832.54!EPAS1;;chr16:54320617..54320643,-!p3@IRX3!1.63!53.44!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.01!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.34!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!1.61!39.77!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.61!39.35!TFCP2L1;;chr21:39870339..39870443,-!p1@ERG!1.55!34.80!ERG;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.38!ELF3;;chr16:54320646..54320672,-!p2@IRX3!1.51!47.22!IRX3;;chr16:85932760..85932775,+!p1@IRF8!1.49!30.24!IRF8;;chr2:68592406..68592424,+!p1@PLEK!1.48!29.00!PLEK;;chr17:74137321..74137337,-!p1@FOXJ1!1.47!28.58!FOXJ1;;chr5:2751785..2751808,-!p2@IRX2!1.44!26.51!IRX2;;chr11:47400062..47400077,-!p2@SPI1!1.43!26.10!SPI1;;chr17:53342311..53342400,+!p1@HLF!1.41!28.17!HLF;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.85!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.39!42.25!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.38!22.78!TFEC;;chr1:151804244..151804310,-!p1@RORC!1.38!22.78!RORC;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.50!DACH1;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.95!FOXA1;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.54!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.87!NR4A3;;chr2:46524865..46524870,+!p9@EPAS1!1.34!24.44!EPAS1;;chr8:55370487..55370503,+!p1@SOX17!1.34!20.71!SOX17;;chr17:59529743..59529798,+!p1@TBX4!1.33!20.30!TBX4;;chr1:201979703..201979721,+!p2@ELF3!1.33!20.30!ELF3;;chr12:52445218..52445237,+!p1@NR4A1!1.31!239.02!NR4A1;;chr22:41763452..41763466,+!p2@TEF!1.31!19.47!TEF;;chr2:180610565..180610578,-!p9@ZNF385B!1.31!19.47!ZNF385B;;chr8:102504651..102504683,+!p1@GRHL2!1.30!19.05!GRHL2;;chr15:66994523..66994541,+!p5@SMAD6!1.29!18.64!SMAD6;;chr16:79634624..79634642,-!p1@MAF!1.28!70.42!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.23!DACH1;;chrX:106960285..106960299,-!p1@TSC22D3!1.26!447.38!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.40!KDM5D;;chr14:74256787..74256858,-!p6@C14orf43!1.26!17.40!C14orf43;;chr17:59477233..59477263,+!p1@TBX2!1.23!49.29!TBX2;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.74!SPDEF;;chr2:85981107..85981120,+!p3@ATOH8!1.22!15.74!ATOH8;;chr14:36988564..36988601,-!p7@NKX2-1!1.22!15.74!NKX2-1;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.34!ZFP106;;chr19:16435625..16435682,+!p1@KLF2!1.20!466.43!KLF2;;chr11:61520075..61520136,+!p1@C11orf9!1.20!31.48!C11orf9;;chr17:59477197..59477212,+!p2@TBX2!1.20!25.68!TBX2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.30!FOXF2;;chr2:145277882..145277967,-!p3@ZEB2!1.19!24.85!ZEB2;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.50!ZNF366;;chr16:54320675..54320715,-!p1@IRX3!1.17!29.41!IRX3;;chr11:125034640..125034655,+!p1@PKNOX2!1.17!13.67!PKNOX2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.47!NFATC2;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.54!FOXQ1;;chr19:16435705..16435726,+!p3@KLF2!1.15!13.26!KLF2;;chr15:66994561..66994597,+!p2@SMAD6!1.14!30.65!SMAD6;;chr17:6926362..6926377,+!p1@BCL6B!1.14!12.84!BCL6B;;chr11:113930401..113930422,+!p3@ZBTB16!1.14!12.84!ZBTB16;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.84!SPI1;;chr15:96873984..96873999,+!p3@NR2F2!1.13!92.38!NR2F2;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.31!OSR1;;chr7:128577972..128578047,+!p1@IRF5!1.11!18.64!IRF5;;chr7:50344289..50344323,+!p1@IKZF1!1.11!12.01!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.10!11.60!IKZF1;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.61!EGR2;;chr3:71355163..71355209,-!p5@FOXP1!1.09!15.74!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.09!11.18!NR3C2;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.18!SPI1;;chr6:391743..391759,+!p1@IRF4!1.09!11.18!IRF4;;chr2:46612334..46612349,+!p6@EPAS1!1.08!14.50!EPAS1;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.05!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.65!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!1.07!10.77!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!1.07!10.77!MEOX2;;chr14:36989427..36989442,-!p1@NKX2-1!1.07!10.77!NKX2-1;;chrX:131623044..131623089,-!p1@MBNL3!1.06!43.50!MBNL3;;chr7:14028488..14028516,-!p2@ETV1!1.06!11.60!ETV1;;chr7:27170359..27170381,-!p1@HOXA4!1.06!10.36!HOXA4;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.36!SPIB;;chr17:36105042..36105060,-!p1@HNF1B!1.06!10.36!HNF1B;;chr2:157189180..157189290,-!p1@NR4A2!1.05!53.44!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!1.05!39.77!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.98!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.50!KLF15;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.48!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.51!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.40!FOXP2;;chr16:79634464..79634493,-!p5@MAF!1.04!9.94!MAF;;chr11:111249993..111250006,-!p1@POU2AF1!1.04!9.94!POU2AF1;;chr12:52448420..52448460,+!p5@NR4A1!1.04!9.94!NR4A1;;chr1:47697539..47697573,-!p3@TAL1!1.04!9.94!TAL1;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.60!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!1.01!1190.94!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.60!KLF15;;chr2:145277640..145277771,-!p1@ZEB2!1.00!124.27!ZEB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.00!33.14!BHLHE41;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!29.83!ZMAT1;;chr1:10754477..10754517,-!p1@CASZ1!1.00!15.33!CASZ1;;chr7:149470540..149470596,-!p2@ZNF467!1.00!12.01!ZNF467;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.11!ZFY;;chr14:36990061..36990072,-!p11@NKX2-1!1.00!9.11!NKX2-1;;chr9:110252035..110252057,-!p1@KLF4!0.99!142.08!KLF4;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!56.34!CSRNP1;;chr15:66994663..66994680,+!p1@SMAD6!0.99!21.13!SMAD6;;chr12:52448338..52448401,+!p7@NR4A1!0.99!8.70!NR4A1;;chr18:77155922..77155939,+!p1@NFATC1!0.97!23.20!NFATC1;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.28!FOXA2;;chr2:180427261..180427297,-!p6@ZNF385B!0.97!8.28!ZNF385B;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.28!ZNF727;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.74!RUNX3;;chr2:46524878..46524891,+!p3@EPAS1!0.95!14.08!EPAS1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.84!MEF2C;;chr2:231090433..231090469,+!p1@SP140!0.95!7.87!SP140;;chr3:169381183..169381205,-!p4@MECOM!0.95!7.87!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.87!SPI1;;chr16:54964740..54964789,+!p1@IRX5!0.94!11.18!IRX5;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.84!CEBPB;;chr2:46602879..46602899,+!p8@EPAS1!0.93!9.11!EPAS1;;chr3:114343039..114343085,-!p8@ZBTB20!0.93!7.46!ZBTB20;;chr20:48808064..48808086,+!p15@CEBPB!0.93!7.46!CEBPB;;chr12:52437488..52437507,+!p2@NR4A1!0.93!7.46!NR4A1;;chr16:54320322..54320343,-!p7@IRX3!0.93!7.46!IRX3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.46!ZBTB7C;;chr19:16435735..16435773,+!p4@KLF2!0.93!7.46!KLF2;;chr20:39317868..39317884,-!p1@MAFB!0.92!91.13!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.92!21.13!TSC22D3;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.30!ELK3;;chr16:54320158..54320200,-!p5@IRX3!0.92!10.77!IRX3;;chr17:59477275..59477286,+!p3@TBX2!0.92!9.94!TBX2;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.28!TCF4;;chr18:53254566..53254567,-!p8@TCF4!0.91!12.01!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!0.91!7.04!ZNF750;;chr12:52448515..52448538,+!p9@NR4A1!0.91!7.04!NR4A1;;chr5:122424918..122424944,+!p1@PRDM6!0.91!7.04!PRDM6;;chr5:122424955..122424988,+!p2@PRDM6!0.91!7.04!PRDM6;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.91!7.04!HOXA5;;chr3:12392932..12392962,+!p8@PPARG!0.91!7.04!PPARG;;chr20:30433396..30433414,-!p1@FOXS1!0.91!7.04!FOXS1;;chr3:69788576..69788648,+!p1@MITF!0.90!38.52!MITF;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.94!PROX1;;chr2:46602901..46602926,+!p7@EPAS1!0.90!9.53!EPAS1;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.70!SATB1;;chr1:61548225..61548299,+!p1@NFIA!0.89!91.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.17!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.89!27.34!HHEX;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.44!MEIS1;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.94!HEY1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.88!741.90!ZFP36L2;;chr3:71179699..71179744,-!p2@FOXP1!0.88!51.78!FOXP1;;chrX:106960249..106960260,-!p5@TSC22D3!0.88!10.77!TSC22D3;;chr9:124991204..124991246,-!p1@LHX6!0.88!6.63!LHX6;;chr6:152011654..152011682,+!p1@ESR1!0.88!6.63!ESR1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.63!HES2;;chr3:168865250..168865272,-!p5@MECOM!0.88!6.63!MECOM;;chr11:34535297..34535317,-!p1@ELF5!0.88!6.63!ELF5;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.28!NCOR2;;chr12:24715376..24715432,-!p1@SOX5!0.87!8.28!SOX5;;chr6:106546808..106546833,+!p3@PRDM1!0.87!8.28!PRDM1;;chr8:106330696..106330719,+!p2@ZFPM2!0.87!8.28!ZFPM2;;chr12:54694758..54694805,-!p1@NFE2!0.87!7.87!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.86!792.44!FOS;;chr3:71630980..71631110,-!p3@FOXP1!0.86!22.78!FOXP1;;chr5:139494712..139494759,+!p5@PURA!0.86!10.77!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.86!6.21!IRX1;;chr2:85981073..85981091,+!p5@ATOH8!0.86!6.21!ATOH8;;chr14:36989940..36989957,-!p2@NKX2-1!0.86!6.21!NKX2-1;;chr19:54058073..54058088,+!p1@ZNF331!0.86!6.21!ZNF331;;chr5:88178983..88179012,-!p1@MEF2C!0.85!50.54!MEF2C;;chr13:41240717..41240735,-!p2@FOXO1!0.85!43.91!FOXO1;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.60!GATA2;;chr10:94449675..94449694,+!p2@HHEX!0.85!16.98!HHEX;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.18!GATA6;;chr2:85980951..85981004,+!p1@ATOH8!0.85!10.36!ATOH8;;chr14:75746722..75746777,+!p2@FOS!0.85!7.87!FOS;;chr3:24536253..24536328,-!p1@THRB!0.84!11.60!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.84!8.28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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10075-102A3 | |id=FF:10075-102A3 | ||
|is_a=EFO:0002091;;FF:0010019;;UBERON:0002171 | |is_a=EFO:0002091;;FF:0010019;;UBERON:0002171 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11786 | |||
|library_id_phase_based=2:CNhs11786 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10075 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10075 | |||
|name=lung, right lower lobe, adult, donor1 | |name=lung, right lower lobe, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11786,LSID820,release009,COMPLETED | |profile_hcage=CNhs11786,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat:RtHAN: Lung | |rna_catalog_number=Cat:RtHAN: Lung | ||
Line 59: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 101: | ||
|top_motifs=T:2.67750437093;EP300:2.54244965207;FOXA2:2.43394823451;HBP1_HMGB_SSRP1_UBTF:2.36518028195;RBPJ:2.18031464392;PRDM1:1.9726048157;HMX1:1.84943300332;SP1:1.62084475801;FOXD3:1.53140835867;TLX2:1.51823023672;MAZ:1.47277677713;FOX{D1,D2}:1.45668501446;TFCP2:1.45351464545;STAT2,4,6:1.42972036218;NKX3-2:1.42344225595;PAX6:1.42331804474;FOXP1:1.42173397669;GATA4:1.39970601513;IKZF2:1.37848811707;FOXO1,3,4:1.37379684021;RFX2..5_RFXANK_RFXAP:1.36914471952;FOX{I1,J2}:1.3269483109;AR:1.31820426104;TFAP2{A,C}:1.31410745036;NFATC1..3:1.27171855213;ETS1,2:1.2627019212;TOPORS:1.23175829982;IRF7:1.2276421346;SPZ1:1.21595923767;IRF1,2:1.17734731959;TFAP4:1.16356109261;TLX1..3_NFIC{dimer}:1.16257099427;HIC1:1.16081635297;AIRE:1.15729661245;XCPE1{core}:1.10169719712;MTE{core}:1.07915954504;SNAI1..3:1.07536667327;MED-1{core}:1.05828716778;GZF1:1.03209756147;ZEB1:0.990411819582;MTF1:0.985009817604;TFAP2B:0.983262933256;HAND1,2:0.970134892776;MZF1:0.94719128182;PITX1..3:0.936098668883;ZNF384:0.891799733814;BPTF:0.885437304798;PATZ1:0.877354414246;HOX{A6,A7,B6,B7}:0.836482231206;CDX1,2,4:0.810369966773;SMAD1..7,9:0.809870212122;FOX{F1,F2,J1}:0.791215869915;ESR1:0.784276414673;LMO2:0.782215611163;SPI1:0.76925633996;MYFfamily:0.769127692208;TEF:0.753807288422;TBP:0.721403141589;ZFP161:0.716856212711;GTF2I:0.713882012082;EGR1..3:0.68754723462;DMAP1_NCOR{1,2}_SMARC:0.668131944323;HNF4A_NR2F1,2:0.657587783434;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653979223325;POU2F1..3:0.651318690776;FOXN1:0.645171441433;SPIB:0.627490786846;TEAD1:0.621182352087;FOXL1:0.610273283088;TBX4,5:0.599535529197;ELF1,2,4:0.596444837565;RREB1:0.591549748883;ZBTB16:0.579195391065;XBP1:0.55456754315;ALX1:0.540074827991;RXR{A,B,G}:0.532270138801;FOXQ1:0.497091562092;MYBL2:0.491037605809;SRF:0.451552000445;NFIL3:0.437585160193;RFX1:0.427841139981;GLI1..3:0.423388556961;ATF2:0.413745816124;SOX5:0.39687718083;SREBF1,2:0.355476030272;NR6A1:0.355413530579;NR3C1:0.348138380867;PAX5:0.312042953319;NKX3-1:0.287592166125;FOXP3:0.285851561199;MYOD1:0.275138614924;GTF2A1,2:0.274545396071;TGIF1:0.259854651328;IKZF1:0.252425056959;ZNF423:0.245355415565;EBF1:0.200093330393;UFEwm:0.196842021342;ALX4:0.196781802675;HNF1A:0.167432314616;CEBPA,B_DDIT3:0.16491785608;RUNX1..3:0.153624627829;NKX6-1,2:0.143496253727;NFIX:0.143416630555;NR1H4:0.108204734207;ARID5B:0.0713478814093;POU5F1:0.0654161575821;REST:0.0252032216525;BREu{core}:0.0244436654159;RXRA_VDR{dimer}:0.0218131436076;ZIC1..3:0.0200917901839;KLF4:0.01593565393;MEF2{A,B,C,D}:0.00240338068469;ZNF148:-0.0119072506261;TAL1_TCF{3,4,12}:-0.0209587211177;ATF6:-0.0465232572954;GFI1B:-0.0470941725642;GATA6:-0.0621106895104;HMGA1,2:-0.0666440395651;NKX2-3_NKX2-5:-0.0928577581687;HLF:-0.0947315257588;STAT5{A,B}:-0.117748199352;ATF4:-0.151827057443;NANOG:-0.175996243987;STAT1,3:-0.198286205323;GCM1,2:-0.22248628569;SOX{8,9,10}:-0.23392986476;SOX2:-0.305340679416;CDC5L:-0.310648192044;TFDP1:-0.343843826693;NFKB1_REL_RELA:-0.364856554212;HSF1,2:-0.404166751629;DBP:-0.407088364743;LHX3,4:-0.423651475678;JUN:-0.444176783896;CREB1:-0.445665232988;MAFB:-0.450809544104;ATF5_CREB3:-0.453472139252;NKX2-1,4:-0.459011132757;TP53:-0.461099742013;PPARG:-0.466362089947;EVI1:-0.472745951225;POU3F1..4:-0.530533712686;POU1F1:-0.531506864417;NHLH1,2:-0.544307716598;PAX8:-0.548157987306;AHR_ARNT_ARNT2:-0.565276516888;ZNF238:-0.583330711955;PAX2:-0.591878180925;NANOG{mouse}:-0.662672428301;NFE2L1:-0.702125853186;ZBTB6:-0.715031037919;CUX2:-0.715509626149;FOSL2:-0.738877785953;GFI1:-0.741642429487;ONECUT1,2:-0.743232506365;EN1,2:-0.769118435226;PAX4:-0.788622319248;HIF1A:-0.838812308228;HES1:-0.849574827799;HOX{A4,D4}:-0.850647697598;NFE2:-0.856455268721;ZNF143:-0.887842480288;FOS_FOS{B,L1}_JUN{B,D}:-0.978438654492;PAX3,7:-0.988451770766;PAX1,9:-0.993355356008;PRRX1,2:-0.995577336352;NR5A1,2:-1.06291062288;BACH2:-1.06687063993;NFY{A,B,C}:-1.09508770102;NRF1:-1.09566524142;NFE2L2:-1.10410178979;PBX1:-1.10659343958;OCT4_SOX2{dimer}:-1.15493987139;NKX2-2,8:-1.18001474358;HOXA9_MEIS1:-1.2095836964;POU6F1:-1.22137511159;E2F1..5:-1.24799162201;bHLH_family:-1.29468058772;HOX{A5,B5}:-1.31052954398;ESRRA:-1.33277299076;LEF1_TCF7_TCF7L1,2:-1.39308146125;SOX17:-1.46088139845;MYB:-1.50105749357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.54664940342;FOXM1:-1.58948483212;CRX:-1.63433595765;ADNP_IRX_SIX_ZHX:-1.64025395809;ELK1,4_GABP{A,B1}:-1.68792358782;VSX1,2:-1.78545933958;RORA:-1.87231809356;PDX1:-1.91404920707;YY1:-1.97523221842 | |top_motifs=T:2.67750437093;EP300:2.54244965207;FOXA2:2.43394823451;HBP1_HMGB_SSRP1_UBTF:2.36518028195;RBPJ:2.18031464392;PRDM1:1.9726048157;HMX1:1.84943300332;SP1:1.62084475801;FOXD3:1.53140835867;TLX2:1.51823023672;MAZ:1.47277677713;FOX{D1,D2}:1.45668501446;TFCP2:1.45351464545;STAT2,4,6:1.42972036218;NKX3-2:1.42344225595;PAX6:1.42331804474;FOXP1:1.42173397669;GATA4:1.39970601513;IKZF2:1.37848811707;FOXO1,3,4:1.37379684021;RFX2..5_RFXANK_RFXAP:1.36914471952;FOX{I1,J2}:1.3269483109;AR:1.31820426104;TFAP2{A,C}:1.31410745036;NFATC1..3:1.27171855213;ETS1,2:1.2627019212;TOPORS:1.23175829982;IRF7:1.2276421346;SPZ1:1.21595923767;IRF1,2:1.17734731959;TFAP4:1.16356109261;TLX1..3_NFIC{dimer}:1.16257099427;HIC1:1.16081635297;AIRE:1.15729661245;XCPE1{core}:1.10169719712;MTE{core}:1.07915954504;SNAI1..3:1.07536667327;MED-1{core}:1.05828716778;GZF1:1.03209756147;ZEB1:0.990411819582;MTF1:0.985009817604;TFAP2B:0.983262933256;HAND1,2:0.970134892776;MZF1:0.94719128182;PITX1..3:0.936098668883;ZNF384:0.891799733814;BPTF:0.885437304798;PATZ1:0.877354414246;HOX{A6,A7,B6,B7}:0.836482231206;CDX1,2,4:0.810369966773;SMAD1..7,9:0.809870212122;FOX{F1,F2,J1}:0.791215869915;ESR1:0.784276414673;LMO2:0.782215611163;SPI1:0.76925633996;MYFfamily:0.769127692208;TEF:0.753807288422;TBP:0.721403141589;ZFP161:0.716856212711;GTF2I:0.713882012082;EGR1..3:0.68754723462;DMAP1_NCOR{1,2}_SMARC:0.668131944323;HNF4A_NR2F1,2:0.657587783434;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653979223325;POU2F1..3:0.651318690776;FOXN1:0.645171441433;SPIB:0.627490786846;TEAD1:0.621182352087;FOXL1:0.610273283088;TBX4,5:0.599535529197;ELF1,2,4:0.596444837565;RREB1:0.591549748883;ZBTB16:0.579195391065;XBP1:0.55456754315;ALX1:0.540074827991;RXR{A,B,G}:0.532270138801;FOXQ1:0.497091562092;MYBL2:0.491037605809;SRF:0.451552000445;NFIL3:0.437585160193;RFX1:0.427841139981;GLI1..3:0.423388556961;ATF2:0.413745816124;SOX5:0.39687718083;SREBF1,2:0.355476030272;NR6A1:0.355413530579;NR3C1:0.348138380867;PAX5:0.312042953319;NKX3-1:0.287592166125;FOXP3:0.285851561199;MYOD1:0.275138614924;GTF2A1,2:0.274545396071;TGIF1:0.259854651328;IKZF1:0.252425056959;ZNF423:0.245355415565;EBF1:0.200093330393;UFEwm:0.196842021342;ALX4:0.196781802675;HNF1A:0.167432314616;CEBPA,B_DDIT3:0.16491785608;RUNX1..3:0.153624627829;NKX6-1,2:0.143496253727;NFIX:0.143416630555;NR1H4:0.108204734207;ARID5B:0.0713478814093;POU5F1:0.0654161575821;REST:0.0252032216525;BREu{core}:0.0244436654159;RXRA_VDR{dimer}:0.0218131436076;ZIC1..3:0.0200917901839;KLF4:0.01593565393;MEF2{A,B,C,D}:0.00240338068469;ZNF148:-0.0119072506261;TAL1_TCF{3,4,12}:-0.0209587211177;ATF6:-0.0465232572954;GFI1B:-0.0470941725642;GATA6:-0.0621106895104;HMGA1,2:-0.0666440395651;NKX2-3_NKX2-5:-0.0928577581687;HLF:-0.0947315257588;STAT5{A,B}:-0.117748199352;ATF4:-0.151827057443;NANOG:-0.175996243987;STAT1,3:-0.198286205323;GCM1,2:-0.22248628569;SOX{8,9,10}:-0.23392986476;SOX2:-0.305340679416;CDC5L:-0.310648192044;TFDP1:-0.343843826693;NFKB1_REL_RELA:-0.364856554212;HSF1,2:-0.404166751629;DBP:-0.407088364743;LHX3,4:-0.423651475678;JUN:-0.444176783896;CREB1:-0.445665232988;MAFB:-0.450809544104;ATF5_CREB3:-0.453472139252;NKX2-1,4:-0.459011132757;TP53:-0.461099742013;PPARG:-0.466362089947;EVI1:-0.472745951225;POU3F1..4:-0.530533712686;POU1F1:-0.531506864417;NHLH1,2:-0.544307716598;PAX8:-0.548157987306;AHR_ARNT_ARNT2:-0.565276516888;ZNF238:-0.583330711955;PAX2:-0.591878180925;NANOG{mouse}:-0.662672428301;NFE2L1:-0.702125853186;ZBTB6:-0.715031037919;CUX2:-0.715509626149;FOSL2:-0.738877785953;GFI1:-0.741642429487;ONECUT1,2:-0.743232506365;EN1,2:-0.769118435226;PAX4:-0.788622319248;HIF1A:-0.838812308228;HES1:-0.849574827799;HOX{A4,D4}:-0.850647697598;NFE2:-0.856455268721;ZNF143:-0.887842480288;FOS_FOS{B,L1}_JUN{B,D}:-0.978438654492;PAX3,7:-0.988451770766;PAX1,9:-0.993355356008;PRRX1,2:-0.995577336352;NR5A1,2:-1.06291062288;BACH2:-1.06687063993;NFY{A,B,C}:-1.09508770102;NRF1:-1.09566524142;NFE2L2:-1.10410178979;PBX1:-1.10659343958;OCT4_SOX2{dimer}:-1.15493987139;NKX2-2,8:-1.18001474358;HOXA9_MEIS1:-1.2095836964;POU6F1:-1.22137511159;E2F1..5:-1.24799162201;bHLH_family:-1.29468058772;HOX{A5,B5}:-1.31052954398;ESRRA:-1.33277299076;LEF1_TCF7_TCF7L1,2:-1.39308146125;SOX17:-1.46088139845;MYB:-1.50105749357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.54664940342;FOXM1:-1.58948483212;CRX:-1.63433595765;ADNP_IRX_SIX_ZHX:-1.64025395809;ELK1,4_GABP{A,B1}:-1.68792358782;VSX1,2:-1.78545933958;RORA:-1.87231809356;PDX1:-1.91404920707;YY1:-1.97523221842 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10075-102A3;search_select_hide=table117:FF:10075-102A3 | |||
}} | }} |
Latest revision as of 12:20, 3 June 2020
Name: | lung, right lower lobe, adult, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11786 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11786
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11786
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.235 |
10 | 10 | 0.109 |
100 | 100 | 0.317 |
101 | 101 | 0.379 |
102 | 102 | 0.879 |
103 | 103 | 0.198 |
104 | 104 | 0.433 |
105 | 105 | 0.617 |
106 | 106 | 0.121 |
107 | 107 | 0.0131 |
108 | 108 | 0.618 |
109 | 109 | 0.132 |
11 | 11 | 0.398 |
110 | 110 | 0.699 |
111 | 111 | 0.767 |
112 | 112 | 0.289 |
113 | 113 | 0.104 |
114 | 114 | 0.681 |
115 | 115 | 0.0796 |
116 | 116 | 0.782 |
117 | 117 | 0.0296 |
118 | 118 | 0.13 |
119 | 119 | 0.746 |
12 | 12 | 0.325 |
120 | 120 | 0.111 |
121 | 121 | 0.75 |
122 | 122 | 0.448 |
123 | 123 | 0.17 |
124 | 124 | 0.642 |
125 | 125 | 0.531 |
126 | 126 | 0.553 |
127 | 127 | 0.448 |
128 | 128 | 0.149 |
129 | 129 | 0.0409 |
13 | 13 | 0.232 |
130 | 130 | 0.315 |
131 | 131 | 0.452 |
132 | 132 | 0.039 |
133 | 133 | 0.147 |
134 | 134 | 0.786 |
135 | 135 | 0.415 |
136 | 136 | 0.215 |
137 | 137 | 0.476 |
138 | 138 | 0.505 |
139 | 139 | 0.587 |
14 | 14 | 0.242 |
140 | 140 | 0.704 |
141 | 141 | 0.206 |
142 | 142 | 0.175 |
143 | 143 | 0.258 |
144 | 144 | 0.818 |
145 | 145 | 0.365 |
146 | 146 | 0.882 |
147 | 147 | 0.715 |
148 | 148 | 0.983 |
149 | 149 | 0.239 |
15 | 15 | 0.287 |
150 | 150 | 0.982 |
151 | 151 | 0.692 |
152 | 152 | 0.0364 |
153 | 153 | 0.276 |
154 | 154 | 0.608 |
155 | 155 | 0.914 |
156 | 156 | 0.189 |
157 | 157 | 0.563 |
158 | 158 | 0.916 |
159 | 159 | 0.394 |
16 | 16 | 0.752 |
160 | 160 | 0.894 |
161 | 161 | 0.136 |
162 | 162 | 0.241 |
163 | 163 | 0.0972 |
164 | 164 | 0.316 |
165 | 165 | 0.0233 |
166 | 166 | 0.806 |
167 | 167 | 0.036 |
168 | 168 | 0.58 |
169 | 169 | 0.248 |
17 | 17 | 0.861 |
18 | 18 | 0.0144 |
19 | 19 | 0.299 |
2 | 2 | 0.028 |
20 | 20 | 0.156 |
21 | 21 | 0.702 |
22 | 22 | 0.824 |
23 | 23 | 0.204 |
24 | 24 | 0.868 |
25 | 25 | 0.323 |
26 | 26 | 0.717 |
27 | 27 | 0.611 |
28 | 28 | 0.968 |
29 | 29 | 0.0479 |
3 | 3 | 0.855 |
30 | 30 | 0.11 |
31 | 31 | 0.846 |
32 | 32 | 0.953 |
33 | 33 | 0.227 |
34 | 34 | 0.107 |
35 | 35 | 0.415 |
36 | 36 | 0.119 |
37 | 37 | 0.468 |
38 | 38 | 0.646 |
39 | 39 | 0.076 |
4 | 4 | 0.0439 |
40 | 40 | 0.205 |
41 | 41 | 0.166 |
42 | 42 | 0.414 |
43 | 43 | 0.736 |
44 | 44 | 0.423 |
45 | 45 | 0.177 |
46 | 46 | 0.538 |
47 | 47 | 0.249 |
48 | 48 | 0.265 |
49 | 49 | 0.348 |
5 | 5 | 0.377 |
50 | 50 | 0.486 |
51 | 51 | 0.711 |
52 | 52 | 0.094 |
53 | 53 | 0.457 |
54 | 54 | 0.818 |
55 | 55 | 0.525 |
56 | 56 | 0.82 |
57 | 57 | 0.381 |
58 | 58 | 0.988 |
59 | 59 | 0.698 |
6 | 6 | 0.514 |
60 | 60 | 0.271 |
61 | 61 | 0.911 |
62 | 62 | 0.542 |
63 | 63 | 0.61 |
64 | 64 | 0.367 |
65 | 65 | 0.389 |
66 | 66 | 1.53588e-4 |
67 | 67 | 0.877 |
68 | 68 | 0.474 |
69 | 69 | 0.691 |
7 | 7 | 0.508 |
70 | 70 | 0.846 |
71 | 71 | 0.324 |
72 | 72 | 0.965 |
73 | 73 | 0.626 |
74 | 74 | 0.322 |
75 | 75 | 0.0104 |
76 | 76 | 0.204 |
77 | 77 | 0.0736 |
78 | 78 | 0.451 |
79 | 79 | 0.531 |
8 | 8 | 0.894 |
80 | 80 | 0.776 |
81 | 81 | 0.728 |
82 | 82 | 0.39 |
83 | 83 | 0.91 |
84 | 84 | 0.869 |
85 | 85 | 0.226 |
86 | 86 | 0.548 |
87 | 87 | 0.0296 |
88 | 88 | 0.519 |
89 | 89 | 0.842 |
9 | 9 | 0.384 |
90 | 90 | 0.0241 |
91 | 91 | 0.659 |
92 | 92 | 0.619 |
93 | 93 | 0.031 |
94 | 94 | 0.552 |
95 | 95 | 0.191 |
96 | 96 | 0.504 |
97 | 97 | 0.952 |
98 | 98 | 0.217 |
99 | 99 | 0.425 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11786
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010019 human lung - adult sample
UBERON:0002171 lower lobe of right lung
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0002171 (lower lobe of right lung)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0006518 (right lung lobe)
0008949 (lower lobe of lung)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000101 (lobe of lung)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0002167 (right lung)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010019 (human lung - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)