FF:10075-102A3: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	lung, right lower lobe, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11786
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	29 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A511335
catalog number	Cat:RtHAN: Lung
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004910

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11786		CAGE		DRX008680		DRR009552

Accession ID Hg19

Library id		BAM		CTSS
CNhs11786		DRZ000977		DRZ002362

Accession ID Hg38

Library id		BAM		CTSS
CNhs11786		DRZ012327		DRZ013712

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0303
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.151
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.326
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.542
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.151
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.151
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0.542
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.591
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.351
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.151
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0.151
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.19
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.151
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.242
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.882
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.151
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.151
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.565
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.075
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.364
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.105
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.151
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.428
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.608
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.659
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0753
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.262
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.151
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.151
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.151
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.151
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.424
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.635
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.183
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.151
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.351
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.232
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.262
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.262
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.351
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	1.255
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11786

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.442
MA0003.1	MA0003.1	0.157
MA0004.1	MA0004.1	0.0309
MA0006.1	MA0006.1	0.0997
MA0007.1	MA0007.1	0.581
MA0009.1	MA0009.1	0.0221
MA0014.1	MA0014.1	0.54
MA0017.1	MA0017.1	0.751
MA0018.2	MA0018.2	0.146
MA0019.1	MA0019.1	0.896
MA0024.1	MA0024.1	0.00181
MA0025.1	MA0025.1	0.973
MA0027.1	MA0027.1	0.78
MA0028.1	MA0028.1	2.35599e-7
MA0029.1	MA0029.1	0.362
MA0030.1	MA0030.1	0.0301
MA0031.1	MA0031.1	0.0547
MA0035.2	MA0035.2	0.153
MA0038.1	MA0038.1	0.0039
MA0039.2	MA0039.2	0.68
MA0040.1	MA0040.1	0.683
MA0041.1	MA0041.1	0.502
MA0042.1	MA0042.1	0.763
MA0043.1	MA0043.1	0.182
MA0046.1	MA0046.1	0.643
MA0047.2	MA0047.2	4.12116e-4
MA0048.1	MA0048.1	0.163
MA0050.1	MA0050.1	2.48694e-4
MA0051.1	MA0051.1	0.0865
MA0052.1	MA0052.1	0.24
MA0055.1	MA0055.1	0.00313
MA0057.1	MA0057.1	0.617
MA0058.1	MA0058.1	0.0113
MA0059.1	MA0059.1	0.00783
MA0060.1	MA0060.1	3.04975e-9
MA0061.1	MA0061.1	0.00308
MA0062.2	MA0062.2	1.08027e-6
MA0065.2	MA0065.2	0.197
MA0066.1	MA0066.1	0.108
MA0067.1	MA0067.1	0.407
MA0068.1	MA0068.1	0.128
MA0069.1	MA0069.1	0.929
MA0070.1	MA0070.1	0.241
MA0071.1	MA0071.1	0.0564
MA0072.1	MA0072.1	0.0233
MA0073.1	MA0073.1	0.723
MA0074.1	MA0074.1	0.67
MA0076.1	MA0076.1	8.27028e-9
MA0077.1	MA0077.1	0.542
MA0078.1	MA0078.1	0.217
MA0079.2	MA0079.2	0.145
MA0080.2	MA0080.2	6.80449e-5
MA0081.1	MA0081.1	0.479
MA0083.1	MA0083.1	0.526
MA0084.1	MA0084.1	0.326
MA0087.1	MA0087.1	0.543
MA0088.1	MA0088.1	0.00359
MA0090.1	MA0090.1	0.469
MA0091.1	MA0091.1	0.529
MA0092.1	MA0092.1	0.973
MA0093.1	MA0093.1	0.0212
MA0099.2	MA0099.2	5.13609e-25
MA0100.1	MA0100.1	0.198
MA0101.1	MA0101.1	7.23512e-4
MA0102.2	MA0102.2	0.0493
MA0103.1	MA0103.1	0.0122
MA0104.2	MA0104.2	4.99195e-5
MA0105.1	MA0105.1	2.17698e-4
MA0106.1	MA0106.1	0.0451
MA0107.1	MA0107.1	7.70634e-4
MA0108.2	MA0108.2	0.0165
MA0111.1	MA0111.1	0.99
MA0112.2	MA0112.2	0.772
MA0113.1	MA0113.1	0.563
MA0114.1	MA0114.1	0.198
MA0115.1	MA0115.1	0.912
MA0116.1	MA0116.1	0.284
MA0117.1	MA0117.1	0.0376
MA0119.1	MA0119.1	0.837
MA0122.1	MA0122.1	0.421
MA0124.1	MA0124.1	0.527
MA0125.1	MA0125.1	0.69
MA0131.1	MA0131.1	0.467
MA0135.1	MA0135.1	0.254
MA0136.1	MA0136.1	0.26
MA0137.2	MA0137.2	0.234
MA0138.2	MA0138.2	0.567
MA0139.1	MA0139.1	0.461
MA0140.1	MA0140.1	0.0112
MA0141.1	MA0141.1	0.102
MA0142.1	MA0142.1	0.0588
MA0143.1	MA0143.1	0.366
MA0144.1	MA0144.1	0.186
MA0145.1	MA0145.1	0.196
MA0146.1	MA0146.1	0.678
MA0147.1	MA0147.1	7.44523e-6
MA0148.1	MA0148.1	0.0175
MA0149.1	MA0149.1	0.285
MA0150.1	MA0150.1	3.43554e-6
MA0152.1	MA0152.1	0.59
MA0153.1	MA0153.1	0.00546
MA0154.1	MA0154.1	0.498
MA0155.1	MA0155.1	0.723
MA0156.1	MA0156.1	0.731
MA0157.1	MA0157.1	0.493
MA0159.1	MA0159.1	0.754
MA0160.1	MA0160.1	0.108
MA0162.1	MA0162.1	0.624
MA0163.1	MA0163.1	2.74875e-4
MA0164.1	MA0164.1	0.288
MA0258.1	MA0258.1	0.733
MA0259.1	MA0259.1	0.00172

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11786

Novel motif	Logo	P-value
1	1	0.235
10	10	0.109
100	100	0.317
101	101	0.379
102	102	0.879
103	103	0.198
104	104	0.433
105	105	0.617
106	106	0.121
107	107	0.0131
108	108	0.618
109	109	0.132
11	11	0.398
110	110	0.699
111	111	0.767
112	112	0.289
113	113	0.104
114	114	0.681
115	115	0.0796
116	116	0.782
117	117	0.0296
118	118	0.13
119	119	0.746
12	12	0.325
120	120	0.111
121	121	0.75
122	122	0.448
123	123	0.17
124	124	0.642
125	125	0.531
126	126	0.553
127	127	0.448
128	128	0.149
129	129	0.0409
13	13	0.232
130	130	0.315
131	131	0.452
132	132	0.039
133	133	0.147
134	134	0.786
135	135	0.415
136	136	0.215
137	137	0.476
138	138	0.505
139	139	0.587
14	14	0.242
140	140	0.704
141	141	0.206
142	142	0.175
143	143	0.258
144	144	0.818
145	145	0.365
146	146	0.882
147	147	0.715
148	148	0.983
149	149	0.239
15	15	0.287
150	150	0.982
151	151	0.692
152	152	0.0364
153	153	0.276
154	154	0.608
155	155	0.914
156	156	0.189
157	157	0.563
158	158	0.916
159	159	0.394
16	16	0.752
160	160	0.894
161	161	0.136
162	162	0.241
163	163	0.0972
164	164	0.316
165	165	0.0233
166	166	0.806
167	167	0.036
168	168	0.58
169	169	0.248
17	17	0.861
18	18	0.0144
19	19	0.299
2	2	0.028
20	20	0.156
21	21	0.702
22	22	0.824
23	23	0.204
24	24	0.868
25	25	0.323
26	26	0.717
27	27	0.611
28	28	0.968
29	29	0.0479
3	3	0.855
30	30	0.11
31	31	0.846
32	32	0.953
33	33	0.227
34	34	0.107
35	35	0.415
36	36	0.119
37	37	0.468
38	38	0.646
39	39	0.076
4	4	0.0439
40	40	0.205
41	41	0.166
42	42	0.414
43	43	0.736
44	44	0.423
45	45	0.177
46	46	0.538
47	47	0.249
48	48	0.265
49	49	0.348
5	5	0.377
50	50	0.486
51	51	0.711
52	52	0.094
53	53	0.457
54	54	0.818
55	55	0.525
56	56	0.82
57	57	0.381
58	58	0.988
59	59	0.698
6	6	0.514
60	60	0.271
61	61	0.911
62	62	0.542
63	63	0.61
64	64	0.367
65	65	0.389
66	66	1.53588e-4
67	67	0.877
68	68	0.474
69	69	0.691
7	7	0.508
70	70	0.846
71	71	0.324
72	72	0.965
73	73	0.626
74	74	0.322
75	75	0.0104
76	76	0.204
77	77	0.0736
78	78	0.451
79	79	0.531
8	8	0.894
80	80	0.776
81	81	0.728
82	82	0.39
83	83	0.91
84	84	0.869
85	85	0.226
86	86	0.548
87	87	0.0296
88	88	0.519
89	89	0.842
9	9	0.384
90	90	0.0241
91	91	0.659
92	92	0.619
93	93	0.031
94	94	0.552
95	95	0.191
96	96	0.504
97	97	0.952
98	98	0.217
99	99	0.425

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11786

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010019 human lung - adult sample
UBERON:0002171 lower lobe of right lung

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0002171 (lower lobe of right lung)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0006518 (right lung lobe)
0008949 (lower lobe of lung)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000101 (lobe of lung)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0002167 (right lung)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010019 (human lung - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000118,UBERON:0000119,UBERON:0000170,UBERON:0000171,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002048,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005153,UBERON:0005178,UBERON:0005181,UBERON:0005423,UBERON:0005597,UBERON:0005911,UBERON:0007023,UBERON:0007026,UBERON:0008947,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00004910
+|accession_numbers=CAGE;DRX008680;DRR009552;DRZ000977;DRZ002362;DRZ012327;DRZ013712
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0002171,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0006518,UBERON:0008949,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000101,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0002167
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010019
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.59!389.80!HOPX;;chr6:134210243..134210257,+!p1@TCF21!2.24!172.32!TCF21;;chr20:62680984..62680999,-!p1@SOX18!2.08!156.17!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.97!92.79!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.94!85.33!HIF3A;;chr16:86544113..86544145,+!p1@FOXF1!1.92!100.66!FOXF1;;chr3:128212033..128212051,-!p1@GATA2!1.81!63.38!GATA2;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.85!CEBPA;;chr3:12330560..12330579,+!p1@PPARG!1.68!53.44!PPARG;;chr5:2751762..2751784,-!p1@IRX2!1.68!46.39!IRX2;;chr3:169381420..169381535,-!p1@MECOM!1.67!53.44!MECOM;;chr11:34642612..34642646,+!p1@EHF!1.66!45.15!EHF;;chr2:46524537..46524553,+!p1@EPAS1!1.63!3832.54!EPAS1;;chr16:54320617..54320643,-!p3@IRX3!1.63!53.44!IRX3;;chr1:40105299..40105326,-!p1@HEYL!1.62!41.01!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.34!ZBTB16;;chr12:54778471..54778528,-!p1@ZNF385A!1.61!39.77!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.61!39.35!TFCP2L1;;chr21:39870339..39870443,-!p1@ERG!1.55!34.80!ERG;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.38!ELF3;;chr16:54320646..54320672,-!p2@IRX3!1.51!47.22!IRX3;;chr16:85932760..85932775,+!p1@IRF8!1.49!30.24!IRF8;;chr2:68592406..68592424,+!p1@PLEK!1.48!29.00!PLEK;;chr17:74137321..74137337,-!p1@FOXJ1!1.47!28.58!FOXJ1;;chr5:2751785..2751808,-!p2@IRX2!1.44!26.51!IRX2;;chr11:47400062..47400077,-!p2@SPI1!1.43!26.10!SPI1;;chr17:53342311..53342400,+!p1@HLF!1.41!28.17!HLF;;chr8:10588010..10588030,-!p1@SOX7!1.41!24.85!SOX7;;chr16:79634595..79634620,-!p2@MAF!1.39!42.25!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.38!22.78!TFEC;;chr1:151804244..151804310,-!p1@RORC!1.38!22.78!RORC;;chr13:72441315..72441454,-!p1@DACH1!1.36!43.50!DACH1;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.95!FOXA1;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.54!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.34!36.87!NR4A3;;chr2:46524865..46524870,+!p9@EPAS1!1.34!24.44!EPAS1;;chr8:55370487..55370503,+!p1@SOX17!1.34!20.71!SOX17;;chr17:59529743..59529798,+!p1@TBX4!1.33!20.30!TBX4;;chr1:201979703..201979721,+!p2@ELF3!1.33!20.30!ELF3;;chr12:52445218..52445237,+!p1@NR4A1!1.31!239.02!NR4A1;;chr22:41763452..41763466,+!p2@TEF!1.31!19.47!TEF;;chr2:180610565..180610578,-!p9@ZNF385B!1.31!19.47!ZNF385B;;chr8:102504651..102504683,+!p1@GRHL2!1.30!19.05!GRHL2;;chr15:66994523..66994541,+!p5@SMAD6!1.29!18.64!SMAD6;;chr16:79634624..79634642,-!p1@MAF!1.28!70.42!MAF;;chr13:72441074..72441172,-!p2@DACH1!1.28!18.23!DACH1;;chrX:106960285..106960299,-!p1@TSC22D3!1.26!447.38!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.40!KDM5D;;chr14:74256787..74256858,-!p6@C14orf43!1.26!17.40!C14orf43;;chr17:59477233..59477263,+!p1@TBX2!1.23!49.29!TBX2;;chr6:34524093..34524135,-!p1@SPDEF!1.22!15.74!SPDEF;;chr2:85981107..85981120,+!p3@ATOH8!1.22!15.74!ATOH8;;chr14:36988564..36988601,-!p7@NKX2-1!1.22!15.74!NKX2-1;;chr15:42749722..42749739,-!p2@ZFP106!1.21!27.34!ZFP106;;chr19:16435625..16435682,+!p1@KLF2!1.20!466.43!KLF2;;chr11:61520075..61520136,+!p1@C11orf9!1.20!31.48!C11orf9;;chr17:59477197..59477212,+!p2@TBX2!1.20!25.68!TBX2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.30!FOXF2;;chr2:145277882..145277967,-!p3@ZEB2!1.19!24.85!ZEB2;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.50!ZNF366;;chr16:54320675..54320715,-!p1@IRX3!1.17!29.41!IRX3;;chr11:125034640..125034655,+!p1@PKNOX2!1.17!13.67!PKNOX2;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.47!NFATC2;;chr6:1312325..1312340,+!p1@FOXQ1!1.15!21.54!FOXQ1;;chr19:16435705..16435726,+!p3@KLF2!1.15!13.26!KLF2;;chr15:66994561..66994597,+!p2@SMAD6!1.14!30.65!SMAD6;;chr17:6926362..6926377,+!p1@BCL6B!1.14!12.84!BCL6B;;chr11:113930401..113930422,+!p3@ZBTB16!1.14!12.84!ZBTB16;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.84!SPI1;;chr15:96873984..96873999,+!p3@NR2F2!1.13!92.38!NR2F2;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.31!OSR1;;chr7:128577972..128578047,+!p1@IRF5!1.11!18.64!IRF5;;chr7:50344289..50344323,+!p1@IKZF1!1.11!12.01!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.10!11.60!IKZF1;;chr10:64576105..64576133,-!p1@EGR2!1.09!23.61!EGR2;;chr3:71355163..71355209,-!p5@FOXP1!1.09!15.74!FOXP1;;chr4:149363494..149363543,-!p1@NR3C2!1.09!11.18!NR3C2;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.18!SPI1;;chr6:391743..391759,+!p1@IRF4!1.09!11.18!IRF4;;chr2:46612334..46612349,+!p6@EPAS1!1.08!14.50!EPAS1;;chr5:92918919..92918942,+!p1@NR2F1!1.07!48.05!NR2F1;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.65!EPAS1;;chr7:15726243..15726293,-!p2@MEOX2!1.07!10.77!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!1.07!10.77!MEOX2;;chr14:36989427..36989442,-!p1@NKX2-1!1.07!10.77!NKX2-1;;chrX:131623044..131623089,-!p1@MBNL3!1.06!43.50!MBNL3;;chr7:14028488..14028516,-!p2@ETV1!1.06!11.60!ETV1;;chr7:27170359..27170381,-!p1@HOXA4!1.06!10.36!HOXA4;;chr19:50922187..50922204,+!p1@SPIB!1.06!10.36!SPIB;;chr17:36105042..36105060,-!p1@HNF1B!1.06!10.36!HNF1B;;chr2:157189180..157189290,-!p1@NR4A2!1.05!53.44!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!1.05!39.77!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.98!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.50!KLF15;;chr18:19749541..19749557,+!p1@GATA6!1.04!31.48!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.51!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!1.04!17.40!FOXP2;;chr16:79634464..79634493,-!p5@MAF!1.04!9.94!MAF;;chr11:111249993..111250006,-!p1@POU2AF1!1.04!9.94!POU2AF1;;chr12:52448420..52448460,+!p5@NR4A1!1.04!9.94!NR4A1;;chr1:47697539..47697573,-!p3@TAL1!1.04!9.94!TAL1;;chr5:92919100..92919135,+!p3@NR2F1!1.02!11.60!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!1.01!1190.94!CEBPD;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.60!KLF15;;chr2:145277640..145277771,-!p1@ZEB2!1.00!124.27!ZEB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.00!33.14!BHLHE41;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!29.83!ZMAT1;;chr1:10754477..10754517,-!p1@CASZ1!1.00!15.33!CASZ1;;chr7:149470540..149470596,-!p2@ZNF467!1.00!12.01!ZNF467;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.11!ZFY;;chr14:36990061..36990072,-!p11@NKX2-1!1.00!9.11!NKX2-1;;chr9:110252035..110252057,-!p1@KLF4!0.99!142.08!KLF4;;chr3:39195037..39195069,-!p2@CSRNP1!0.99!56.34!CSRNP1;;chr15:66994663..66994680,+!p1@SMAD6!0.99!21.13!SMAD6;;chr12:52448338..52448401,+!p7@NR4A1!0.99!8.70!NR4A1;;chr18:77155922..77155939,+!p1@NFATC1!0.97!23.20!NFATC1;;chr20:22564895..22564910,-!p1@FOXA2!0.97!8.28!FOXA2;;chr2:180427261..180427297,-!p6@ZNF385B!0.97!8.28!ZNF385B;;chr7:63505799..63505904,+!p1@ZNF727!0.97!8.28!ZNF727;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.74!RUNX3;;chr2:46524878..46524891,+!p3@EPAS1!0.95!14.08!EPAS1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.84!MEF2C;;chr2:231090433..231090469,+!p1@SP140!0.95!7.87!SP140;;chr3:169381183..169381205,-!p4@MECOM!0.95!7.87!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.95!7.87!SPI1;;chr16:54964740..54964789,+!p1@IRX5!0.94!11.18!IRX5;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.84!CEBPB;;chr2:46602879..46602899,+!p8@EPAS1!0.93!9.11!EPAS1;;chr3:114343039..114343085,-!p8@ZBTB20!0.93!7.46!ZBTB20;;chr20:48808064..48808086,+!p15@CEBPB!0.93!7.46!CEBPB;;chr12:52437488..52437507,+!p2@NR4A1!0.93!7.46!NR4A1;;chr16:54320322..54320343,-!p7@IRX3!0.93!7.46!IRX3;;chr18:45935720..45935772,-!p1@ZBTB7C!0.93!7.46!ZBTB7C;;chr19:16435735..16435773,+!p4@KLF2!0.93!7.46!KLF2;;chr20:39317868..39317884,-!p1@MAFB!0.92!91.13!MAFB;;chrX:106960221..106960236,-!p3@TSC22D3!0.92!21.13!TSC22D3;;chr12:96588368..96588394,+!p3@ELK3!0.92!20.30!ELK3;;chr16:54320158..54320200,-!p5@IRX3!0.92!10.77!IRX3;;chr17:59477275..59477286,+!p3@TBX2!0.92!9.94!TBX2;;chr18:53068911..53068935,-!p4@TCF4!0.92!8.28!TCF4;;chr18:53254566..53254567,-!p8@TCF4!0.91!12.01!TCF4;;chr17:80797886..80797906,-!p1@ZNF750!0.91!7.04!ZNF750;;chr12:52448515..52448538,+!p9@NR4A1!0.91!7.04!NR4A1;;chr5:122424918..122424944,+!p1@PRDM6!0.91!7.04!PRDM6;;chr5:122424955..122424988,+!p2@PRDM6!0.91!7.04!PRDM6;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.91!7.04!HOXA5;;chr3:12392932..12392962,+!p8@PPARG!0.91!7.04!PPARG;;chr20:30433396..30433414,-!p1@FOXS1!0.91!7.04!FOXS1;;chr3:69788576..69788648,+!p1@MITF!0.90!38.52!MITF;;chr1:214161272..214161322,+!p1@PROX1!0.90!9.94!PROX1;;chr2:46602901..46602926,+!p7@EPAS1!0.90!9.53!EPAS1;;chr3:18486354..18486377,-!p2@SATB1!0.90!8.70!SATB1;;chr1:61548225..61548299,+!p1@NFIA!0.89!91.96!NFIA;;chr5:137804484..137804498,+!p2@EGR1!0.89!28.17!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.89!27.34!HHEX;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.44!MEIS1;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.94!HEY1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.88!741.90!ZFP36L2;;chr3:71179699..71179744,-!p2@FOXP1!0.88!51.78!FOXP1;;chrX:106960249..106960260,-!p5@TSC22D3!0.88!10.77!TSC22D3;;chr9:124991204..124991246,-!p1@LHX6!0.88!6.63!LHX6;;chr6:152011654..152011682,+!p1@ESR1!0.88!6.63!ESR1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.63!HES2;;chr3:168865250..168865272,-!p5@MECOM!0.88!6.63!MECOM;;chr11:34535297..34535317,-!p1@ELF5!0.88!6.63!ELF5;;chr12:125003087..125003141,-!p4@NCOR2!0.87!8.28!NCOR2;;chr12:24715376..24715432,-!p1@SOX5!0.87!8.28!SOX5;;chr6:106546808..106546833,+!p3@PRDM1!0.87!8.28!PRDM1;;chr8:106330696..106330719,+!p2@ZFPM2!0.87!8.28!ZFPM2;;chr12:54694758..54694805,-!p1@NFE2!0.87!7.87!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.86!792.44!FOS;;chr3:71630980..71631110,-!p3@FOXP1!0.86!22.78!FOXP1;;chr5:139494712..139494759,+!p5@PURA!0.86!10.77!PURA;;chr5:3595977..3595999,+!p1@IRX1!0.86!6.21!IRX1;;chr2:85981073..85981091,+!p5@ATOH8!0.86!6.21!ATOH8;;chr14:36989940..36989957,-!p2@NKX2-1!0.86!6.21!NKX2-1;;chr19:54058073..54058088,+!p1@ZNF331!0.86!6.21!ZNF331;;chr5:88178983..88179012,-!p1@MEF2C!0.85!50.54!MEF2C;;chr13:41240717..41240735,-!p2@FOXO1!0.85!43.91!FOXO1;;chr3:128206762..128206781,-!p2@GATA2!0.85!40.60!GATA2;;chr10:94449675..94449694,+!p2@HHEX!0.85!16.98!HHEX;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.18!GATA6;;chr2:85980951..85981004,+!p1@ATOH8!0.85!10.36!ATOH8;;chr14:75746722..75746777,+!p2@FOS!0.85!7.87!FOS;;chr3:24536253..24536328,-!p1@THRB!0.84!11.60!THRB;;chr2:192015701..192015743,-!p1@STAT4!0.84!8.2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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520right%2520lower%2520lobe%252c%2520adult%252c%2520donor1.CNhs11786.10075-102A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10075-102A3
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010019;;UBERON:0002171
+|is_a=EFO:0002091;;FF:0010019;;UBERON:0002171
+|is_obsolete=
+|library_id=CNhs11786
+|library_id_phase_based=2:CNhs11786
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10075
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10075
 |name=lung, right lower lobe, adult, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11786,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=102
 |rna_catalog_number=Cat:RtHAN: Lung
@@ Line 57: / Line 79: @@
 |rna_weight_ug=50
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=A?
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.58262477156385e-283!GO:0005737;cytoplasm;5.04082276950778e-155!GO:0044444;cytoplasmic part;3.29362416190282e-98!GO:0043226;organelle;1.13640858125451e-95!GO:0043229;intracellular organelle;2.25345403237813e-95!GO:0043227;membrane-bound organelle;4.39749342721154e-93!GO:0043231;intracellular membrane-bound organelle;5.07557033243098e-93!GO:0005515;protein binding;2.53880636131999e-92!GO:0044422;organelle part;2.86283700532016e-64!GO:0044446;intracellular organelle part;5.72984749497374e-63!GO:0032991;macromolecular complex;2.89366965467455e-50!GO:0019538;protein metabolic process;2.8309792287169e-42!GO:0030529;ribonucleoprotein complex;5.51593529364937e-40!GO:0016043;cellular component organization and biogenesis;1.70119392816198e-39!GO:0044237;cellular metabolic process;9.8790193210615e-39!GO:0044238;primary metabolic process;1.26884591648522e-38!GO:0031090;organelle membrane;4.24298216496884e-37!GO:0003723;RNA binding;1.64243418637656e-36!GO:0044260;cellular macromolecule metabolic process;4.06849168830251e-36!GO:0043170;macromolecule metabolic process;4.24163967684841e-36!GO:0044267;cellular protein metabolic process;9.84446086629167e-36!GO:0033036;macromolecule localization;2.70864815194287e-35!GO:0015031;protein transport;2.32541563686391e-34!GO:0008104;protein localization;1.9364535522014e-33!GO:0045184;establishment of protein localization;1.9364535522014e-33!GO:0043233;organelle lumen;2.43687784833192e-31!GO:0031974;membrane-enclosed lumen;2.43687784833192e-31!GO:0044428;nuclear part;2.22050884885631e-30!GO:0005739;mitochondrion;4.52089488339274e-30!GO:0005829;cytosol;1.92841844538054e-28!GO:0006412;translation;2.16750853109371e-27!GO:0043234;protein complex;7.38325396435522e-27!GO:0005840;ribosome;7.00789482498691e-25!GO:0046907;intracellular transport;8.61360866714826e-25!GO:0006886;intracellular protein transport;5.24115971969963e-24!GO:0031967;organelle envelope;1.12402729320382e-22!GO:0031975;envelope;1.88015304904499e-22!GO:0005634;nucleus;2.3771874922857e-22!GO:0009059;macromolecule biosynthetic process;3.17420686908433e-22!GO:0003735;structural constituent of ribosome;3.67718208554813e-22!GO:0065003;macromolecular complex assembly;7.28926289879752e-22!GO:0044429;mitochondrial part;2.18753596768552e-21!GO:0016071;mRNA metabolic process;3.71609666280472e-21!GO:0009058;biosynthetic process;3.96712740583692e-21!GO:0033279;ribosomal subunit;3.97697523283028e-20!GO:0022607;cellular component assembly;2.25379204441537e-19!GO:0016192;vesicle-mediated transport;2.35952767223588e-19!GO:0008380;RNA splicing;6.26266693247876e-19!GO:0044249;cellular biosynthetic process;7.01628022874055e-19!GO:0005794;Golgi apparatus;1.85837924847008e-18!GO:0031981;nuclear lumen;3.45187037276651e-18!GO:0048770;pigment granule;4.73688984555915e-18!GO:0042470;melanosome;4.73688984555915e-18!GO:0006396;RNA processing;5.82668379659836e-18!GO:0051641;cellular localization;1.19145565279623e-17!GO:0051649;establishment of cellular localization;1.37043140309e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.8677506065661e-17!GO:0012505;endomembrane system;1.86776277549912e-17!GO:0006119;oxidative phosphorylation;2.03154782970756e-17!GO:0008134;transcription factor binding;5.44308252856578e-17!GO:0006397;mRNA processing;9.33911004106172e-17!GO:0005783;endoplasmic reticulum;7.58329398199778e-16!GO:0048523;negative regulation of cellular process;9.71875159712215e-16!GO:0043283;biopolymer metabolic process;5.66225064561145e-15!GO:0012501;programmed cell death;7.85290916518752e-15!GO:0005773;vacuole;8.08558162137698e-15!GO:0006915;apoptosis;1.33757124474736e-14!GO:0005740;mitochondrial envelope;1.6016166303351e-14!GO:0031966;mitochondrial membrane;3.20782265081043e-14!GO:0008219;cell death;4.02609257667259e-14!GO:0016265;death;4.02609257667259e-14!GO:0048519;negative regulation of biological process;6.12482769719614e-14!GO:0000323;lytic vacuole;7.80516560205979e-14!GO:0005764;lysosome;7.80516560205979e-14!GO:0005681;spliceosome;8.29004730770073e-14!GO:0019866;organelle inner membrane;1.184230459124e-13!GO:0044445;cytosolic part;2.45570710454228e-13!GO:0043412;biopolymer modification;2.45656238420008e-13!GO:0006793;phosphorus metabolic process;3.40724221254223e-13!GO:0006796;phosphate metabolic process;3.40724221254223e-13!GO:0006464;protein modification process;3.84227775770108e-13!GO:0005654;nucleoplasm;5.91430025631757e-13!GO:0000166;nucleotide binding;9.53342430251608e-13!GO:0006996;organelle organization and biogenesis;1.45403703376118e-12!GO:0010467;gene expression;2.06909468610905e-12!GO:0005743;mitochondrial inner membrane;2.28842713756898e-12!GO:0005746;mitochondrial respiratory chain;3.05178579121971e-12!GO:0030036;actin cytoskeleton organization and biogenesis;4.25651219610078e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.25651219610078e-12!GO:0019941;modification-dependent protein catabolic process;8.95567042871764e-12!GO:0043632;modification-dependent macromolecule catabolic process;8.95567042871764e-12!GO:0043687;post-translational protein modification;9.84300757758534e-12!GO:0044257;cellular protein catabolic process;1.07802549391823e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.20915194592227e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.21704855101908e-11!GO:0044265;cellular macromolecule catabolic process;1.61052062630048e-11!GO:0006605;protein targeting;2.4842794231386e-11!GO:0044451;nucleoplasm part;2.64451395338434e-11!GO:0044455;mitochondrial membrane part;2.72980256479431e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.72980256479431e-11!GO:0003954;NADH dehydrogenase activity;2.72980256479431e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.72980256479431e-11!GO:0006461;protein complex assembly;3.53188175194499e-11!GO:0043228;non-membrane-bound organelle;4.64738025341748e-11!GO:0043232;intracellular non-membrane-bound organelle;4.64738025341748e-11!GO:0048193;Golgi vesicle transport;5.3146032877036e-11!GO:0015935;small ribosomal subunit;5.70915284247345e-11!GO:0016310;phosphorylation;7.02965452274072e-11!GO:0022618;protein-RNA complex assembly;1.16904579552564e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.38207020208548e-10!GO:0043285;biopolymer catabolic process;1.76976660084351e-10!GO:0030029;actin filament-based process;3.92151380225066e-10!GO:0015934;large ribosomal subunit;3.97817177141031e-10!GO:0003712;transcription cofactor activity;4.20963830908953e-10!GO:0044432;endoplasmic reticulum part;4.3990476627445e-10!GO:0006913;nucleocytoplasmic transport;4.96510699586336e-10!GO:0005768;endosome;6.71536408162549e-10!GO:0031982;vesicle;7.73472997586342e-10!GO:0051169;nuclear transport;1.01038244069335e-09!GO:0008092;cytoskeletal protein binding;1.07157707674115e-09!GO:0030163;protein catabolic process;1.63495381324107e-09!GO:0030964;NADH dehydrogenase complex (quinone);1.8309970547971e-09!GO:0045271;respiratory chain complex I;1.8309970547971e-09!GO:0005747;mitochondrial respiratory chain complex I;1.8309970547971e-09!GO:0016874;ligase activity;2.04132847807738e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.25713289058971e-09!GO:0017076;purine nucleotide binding;2.32315565360356e-09!GO:0051246;regulation of protein metabolic process;2.37907964248278e-09!GO:0031410;cytoplasmic vesicle;2.50398283747314e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.03934395816248e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.06107498534331e-09!GO:0042773;ATP synthesis coupled electron transport;3.06107498534331e-09!GO:0006457;protein folding;3.42931919143525e-09!GO:0032553;ribonucleotide binding;3.58826946329748e-09!GO:0032555;purine ribonucleotide binding;3.58826946329748e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.69309811430552e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.90791943735938e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.08073077096059e-09!GO:0006512;ubiquitin cycle;4.7089439853565e-09!GO:0007243;protein kinase cascade;4.969478378049e-09!GO:0008565;protein transporter activity;5.16504034565521e-09!GO:0031980;mitochondrial lumen;5.71080129734435e-09!GO:0005759;mitochondrial matrix;5.71080129734435e-09!GO:0005793;ER-Golgi intermediate compartment;5.75243007848542e-09!GO:0044248;cellular catabolic process;6.65766521250201e-09!GO:0006366;transcription from RNA polymerase II promoter;6.76889078071965e-09!GO:0016044;membrane organization and biogenesis;6.78982835063963e-09!GO:0019829;cation-transporting ATPase activity;7.3414239962233e-09!GO:0031988;membrane-bound vesicle;7.47098917499183e-09!GO:0050794;regulation of cellular process;9.37135635436191e-09!GO:0042981;regulation of apoptosis;1.0759421897427e-08!GO:0005635;nuclear envelope;1.11259539395933e-08!GO:0048518;positive regulation of biological process;1.20880000737792e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.21826059470784e-08!GO:0009057;macromolecule catabolic process;1.32459070849513e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.32809344984586e-08!GO:0043067;regulation of programmed cell death;1.48734402728238e-08!GO:0051186;cofactor metabolic process;1.82930339394235e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.90313525462078e-08!GO:0008639;small protein conjugating enzyme activity;2.37049595110622e-08!GO:0048522;positive regulation of cellular process;2.61190191401104e-08!GO:0006950;response to stress;3.55222890277443e-08!GO:0004842;ubiquitin-protein ligase activity;3.77411857436653e-08!GO:0019899;enzyme binding;3.77411857436653e-08!GO:0016462;pyrophosphatase activity;4.12110652810241e-08!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.39123381899555e-08!GO:0016564;transcription repressor activity;4.45674125225876e-08!GO:0008135;translation factor activity, nucleic acid binding;5.26176763906993e-08!GO:0044431;Golgi apparatus part;5.79879518821845e-08!GO:0016817;hydrolase activity, acting on acid anhydrides;6.28786772965177e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.38156724088339e-08!GO:0017111;nucleoside-triphosphatase activity;8.84734394626496e-08!GO:0050789;regulation of biological process;9.4485572369296e-08!GO:0031965;nuclear membrane;1.07051935781066e-07!GO:0031252;leading edge;1.22661237725818e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.23172616977384e-07!GO:0007264;small GTPase mediated signal transduction;1.23390610407236e-07!GO:0016604;nuclear body;1.48642219064904e-07!GO:0005789;endoplasmic reticulum membrane;1.55791851580159e-07!GO:0015986;ATP synthesis coupled proton transport;1.56582785842892e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.56582785842892e-07!GO:0006446;regulation of translational initiation;1.69698333827043e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.71324480379858e-07!GO:0006897;endocytosis;1.80427434658618e-07!GO:0010324;membrane invagination;1.80427434658618e-07!GO:0007242;intracellular signaling cascade;1.80427434658618e-07!GO:0006732;coenzyme metabolic process;2.40688573563941e-07!GO:0005770;late endosome;2.93694181256296e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.93694181256296e-07!GO:0000375;RNA splicing, via transesterification reactions;2.93694181256296e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.93694181256296e-07!GO:0019787;small conjugating protein ligase activity;3.10453870847587e-07!GO:0017038;protein import;3.78728162424376e-07!GO:0006413;translational initiation;5.01092950598581e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.02395425924146e-07!GO:0003743;translation initiation factor activity;5.70567096947598e-07!GO:0043069;negative regulation of programmed cell death;5.95050218456161e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.16853843388554e-07!GO:0043066;negative regulation of apoptosis;8.72678055551967e-07!GO:0051082;unfolded protein binding;1.14073107090128e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14353945248659e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14353945248659e-06!GO:0008361;regulation of cell size;1.65277803896778e-06!GO:0030554;adenyl nucleotide binding;1.73247224179672e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.73514509343505e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.73514509343505e-06!GO:0009055;electron carrier activity;1.78056011596355e-06!GO:0031324;negative regulation of cellular metabolic process;1.81263571452825e-06!GO:0003779;actin binding;1.90723770378065e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.0494958485962e-06!GO:0016049;cell growth;2.1150468927696e-06!GO:0006606;protein import into nucleus;2.14759874166823e-06!GO:0032559;adenyl ribonucleotide binding;2.21766074527869e-06!GO:0051170;nuclear import;2.28029292159928e-06!GO:0006916;anti-apoptosis;2.40586614730355e-06!GO:0005524;ATP binding;2.68438644612567e-06!GO:0005761;mitochondrial ribosome;2.69661456770022e-06!GO:0000313;organellar ribosome;2.69661456770022e-06!GO:0016607;nuclear speck;2.73496790783099e-06!GO:0009966;regulation of signal transduction;2.91454901575979e-06!GO:0009060;aerobic respiration;3.15503639691968e-06!GO:0009892;negative regulation of metabolic process;3.28990887114207e-06!GO:0000139;Golgi membrane;3.628707274159e-06!GO:0003714;transcription corepressor activity;3.66488377169799e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.88326285389174e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.88326285389174e-06!GO:0065007;biological regulation;4.15552927728023e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.43982232179546e-06!GO:0006754;ATP biosynthetic process;5.50211602956146e-06!GO:0006753;nucleoside phosphate metabolic process;5.50211602956146e-06!GO:0045333;cellular respiration;5.5693161895372e-06!GO:0016881;acid-amino acid ligase activity;6.39718682389477e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.02364860018935e-06!GO:0009141;nucleoside triphosphate metabolic process;7.26981630604923e-06!GO:0045786;negative regulation of progression through cell cycle;7.95088930902694e-06!GO:0030120;vesicle coat;8.26483661574463e-06!GO:0030662;coated vesicle membrane;8.26483661574463e-06!GO:0009150;purine ribonucleotide metabolic process;8.38562279652449e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.0930039860036e-05!GO:0005730;nucleolus;1.33266369724077e-05!GO:0048475;coated membrane;1.39954038051068e-05!GO:0030117;membrane coat;1.39954038051068e-05!GO:0009056;catabolic process;1.58440998453941e-05!GO:0030695;GTPase regulator activity;1.62424246728599e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.69991232345762e-05!GO:0016481;negative regulation of transcription;1.8537735205058e-05!GO:0044453;nuclear membrane part;1.9085826335522e-05!GO:0042802;identical protein binding;1.94456810685206e-05!GO:0009259;ribonucleotide metabolic process;1.98452336668833e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.0265800248248e-05!GO:0046034;ATP metabolic process;2.44906655187731e-05!GO:0001558;regulation of cell growth;2.49140888717045e-05!GO:0006163;purine nucleotide metabolic process;2.56438137993076e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.83697649377329e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.22299934139061e-05!GO:0005525;GTP binding;3.50570243833623e-05!GO:0006164;purine nucleotide biosynthetic process;3.70742510852628e-05!GO:0006099;tricarboxylic acid cycle;3.73395844183177e-05!GO:0046356;acetyl-CoA catabolic process;3.73395844183177e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.44220286636075e-05!GO:0009260;ribonucleotide biosynthetic process;4.8733968439802e-05!GO:0045259;proton-transporting ATP synthase complex;5.98440090145457e-05!GO:0005083;small GTPase regulator activity;6.87329945259856e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.18779551808841e-05!GO:0003713;transcription coactivator activity;9.12577410710477e-05!GO:0008047;enzyme activator activity;9.39832911832328e-05!GO:0044440;endosomal part;9.49808297691598e-05!GO:0010008;endosome membrane;9.49808297691598e-05!GO:0007010;cytoskeleton organization and biogenesis;0.00010625827786268!GO:0009615;response to virus;0.000109221776682106!GO:0048471;perinuclear region of cytoplasm;0.000110503169452627!GO:0051674;localization of cell;0.000116574438469371!GO:0006928;cell motility;0.000116574438469371!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000119180960737636!GO:0006613;cotranslational protein targeting to membrane;0.000120101884537618!GO:0032446;protein modification by small protein conjugation;0.000123395521806705!GO:0005774;vacuolar membrane;0.000128159482600431!GO:0009967;positive regulation of signal transduction;0.000136657665913869!GO:0016567;protein ubiquitination;0.000142301312585499!GO:0016563;transcription activator activity;0.000147381455544461!GO:0005643;nuclear pore;0.000152738306132173!GO:0005791;rough endoplasmic reticulum;0.000161398534802665!GO:0000151;ubiquitin ligase complex;0.000170098154494654!GO:0032561;guanyl ribonucleotide binding;0.000180823677576538!GO:0019001;guanyl nucleotide binding;0.000180823677576538!GO:0051188;cofactor biosynthetic process;0.000181051707773854!GO:0004298;threonine endopeptidase activity;0.00018803468407694!GO:0016197;endosome transport;0.000192542020325204!GO:0006084;acetyl-CoA metabolic process;0.000209615430484587!GO:0003924;GTPase activity;0.000214676384480797!GO:0007265;Ras protein signal transduction;0.000237718779155954!GO:0006259;DNA metabolic process;0.000240296760538575!GO:0030027;lamellipodium;0.00024092452057078!GO:0045892;negative regulation of transcription, DNA-dependent;0.00036559545367735!GO:0001726;ruffle;0.000372173056516894!GO:0007167;enzyme linked receptor protein signaling pathway;0.000376633891424294!GO:0016887;ATPase activity;0.000382113580987785!GO:0040008;regulation of growth;0.000396911042621692!GO:0005798;Golgi-associated vesicle;0.000396911042621692!GO:0005765;lysosomal membrane;0.000404870599129342!GO:0051187;cofactor catabolic process;0.000428820842348064!GO:0043566;structure-specific DNA binding;0.000444335114873662!GO:0009109;coenzyme catabolic process;0.000452310547887354!GO:0005096;GTPase activator activity;0.000483683957379062!GO:0030532;small nuclear ribonucleoprotein complex;0.000484081949001415!GO:0005769;early endosome;0.000487525543737906!GO:0051789;response to protein stimulus;0.000527354659748787!GO:0006986;response to unfolded protein;0.000527354659748787!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000551204739695321!GO:0048468;cell development;0.00057754410450771!GO:0009108;coenzyme biosynthetic process;0.000624285928315637!GO:0005100;Rho GTPase activator activity;0.000625898128736733!GO:0005885;Arp2/3 protein complex;0.000641197400354469!GO:0051128;regulation of cellular component organization and biogenesis;0.000641197400354469!GO:0030133;transport vesicle;0.000658806879872426!GO:0000245;spliceosome assembly;0.000659014300153449!GO:0044437;vacuolar part;0.0006692455960095!GO:0030041;actin filament polymerization;0.0006839709900195!GO:0045926;negative regulation of growth;0.00069749505454789!GO:0065009;regulation of a molecular function;0.000703537042837553!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000704857811774656!GO:0015399;primary active transmembrane transporter activity;0.000704857811774656!GO:0042623;ATPase activity, coupled;0.000726123021363853!GO:0008283;cell proliferation;0.000772041882338991!GO:0008154;actin polymerization and/or depolymerization;0.000782923552224683!GO:0045121;lipid raft;0.000816723745200792!GO:0050657;nucleic acid transport;0.000821795951017563!GO:0051236;establishment of RNA localization;0.000821795951017563!GO:0050658;RNA transport;0.000821795951017563!GO:0006403;RNA localization;0.000840649737534573!GO:0046930;pore complex;0.000963164646405025!GO:0031902;late endosome membrane;0.000963164646405025!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00103668443030207!GO:0006417;regulation of translation;0.00105207613529719!GO:0006752;group transfer coenzyme metabolic process;0.00109288995239517!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00113392459985783!GO:0019843;rRNA binding;0.00114711602004751!GO:0019904;protein domain specific binding;0.00117549684270717!GO:0030308;negative regulation of cell growth;0.00119581015416529!GO:0045792;negative regulation of cell size;0.00120599598231124!GO:0005788;endoplasmic reticulum lumen;0.00120599598231124!GO:0030867;rough endoplasmic reticulum membrane;0.00129052585607669!GO:0060090;molecular adaptor activity;0.00129639810135425!GO:0043065;positive regulation of apoptosis;0.0014262828398079!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00145876775274164!GO:0045893;positive regulation of transcription, DNA-dependent;0.00150548317998801!GO:0006091;generation of precursor metabolites and energy;0.00155144077165982!GO:0008286;insulin receptor signaling pathway;0.001650427796919!GO:0005905;coated pit;0.00165369986201963!GO:0009893;positive regulation of metabolic process;0.00165991947507465!GO:0008654;phospholipid biosynthetic process;0.00167504004115344!GO:0045941;positive regulation of transcription;0.00175155142476552!GO:0016491;oxidoreductase activity;0.00181866210757584!GO:0043623;cellular protein complex assembly;0.00181866210757584!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00181866210757584!GO:0004576;oligosaccharyl transferase activity;0.00182004943659556!GO:0043068;positive regulation of programmed cell death;0.00184765941144511!GO:0051726;regulation of cell cycle;0.00186337049662384!GO:0033116;ER-Golgi intermediate compartment membrane;0.00186337049662384!GO:0006468;protein amino acid phosphorylation;0.00196169669578872!GO:0006612;protein targeting to membrane;0.00198032385184775!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00198923092049935!GO:0003697;single-stranded DNA binding;0.00198923092049935!GO:0043492;ATPase activity, coupled to movement of substances;0.00200520347169281!GO:0016301;kinase activity;0.0020169778493306!GO:0005667;transcription factor complex;0.00212332138686359!GO:0008250;oligosaccharyl transferase complex;0.00218643858968549!GO:0016070;RNA metabolic process;0.00231460766728016!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00232457779526334!GO:0000074;regulation of progression through cell cycle;0.00233095815588394!GO:0033673;negative regulation of kinase activity;0.0024975504768165!GO:0006469;negative regulation of protein kinase activity;0.0024975504768165!GO:0006643;membrane lipid metabolic process;0.00253042594431583!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.002547438313399!GO:0030100;regulation of endocytosis;0.00268947506778212!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00272049072571138!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00282692535012093!GO:0050900;leukocyte migration;0.00283016842713173!GO:0005057;receptor signaling protein activity;0.00302359060985722!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00317834827624526!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00317834827624526!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00317834827624526!GO:0030118;clathrin coat;0.00317834827624526!GO:0065002;intracellular protein transport across a membrane;0.00329107896078946!GO:0046983;protein dimerization activity;0.00338839408706395!GO:0032940;secretion by cell;0.00338839408706395!GO:0045045;secretory pathway;0.00343434400504287!GO:0016791;phosphoric monoester hydrolase activity;0.00358182545170981!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00365917083092948!GO:0030031;cell projection biogenesis;0.00371381968018534!GO:0005741;mitochondrial outer membrane;0.00375581867686228!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00379813512328942!GO:0007229;integrin-mediated signaling pathway;0.00384407057032259!GO:0016311;dephosphorylation;0.00405632641902156!GO:0051028;mRNA transport;0.00408343678751012!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00415942865243106!GO:0005070;SH3/SH2 adaptor activity;0.00420708120211155!GO:0046456;icosanoid biosynthetic process;0.00421129287360898!GO:0051168;nuclear export;0.00425356548859754!GO:0051427;hormone receptor binding;0.00446938575479304!GO:0006650;glycerophospholipid metabolic process;0.00452629800346989!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00454418319814178!GO:0051348;negative regulation of transferase activity;0.00457307461980595!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00463210463562157!GO:0006402;mRNA catabolic process;0.00470012152756711!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00484261702776576!GO:0009117;nucleotide metabolic process;0.00498599121812802!GO:0001944;vasculature development;0.00500851309096181!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00528742427160786!GO:0006693;prostaglandin metabolic process;0.00533936345898226!GO:0006692;prostanoid metabolic process;0.00533936345898226!GO:0030139;endocytic vesicle;0.00534664147947759!GO:0000902;cell morphogenesis;0.00550862728123714!GO:0032989;cellular structure morphogenesis;0.00550862728123714!GO:0003690;double-stranded DNA binding;0.00551848514303693!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00553924671070705!GO:0051920;peroxiredoxin activity;0.00566851019273892!GO:0019867;outer membrane;0.00598778791566351!GO:0016568;chromatin modification;0.00607090740953715!GO:0001568;blood vessel development;0.00608720861222866!GO:0031968;organelle outer membrane;0.00622037223222592!GO:0006323;DNA packaging;0.00639954099369614!GO:0051270;regulation of cell motility;0.00648104614946337!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00665084962588622!GO:0006917;induction of apoptosis;0.00665180218027969!GO:0001666;response to hypoxia;0.00687632010567191!GO:0035257;nuclear hormone receptor binding;0.00719951166362269!GO:0007266;Rho protein signal transduction;0.00726598220831111!GO:0002376;immune system process;0.00727331040888874!GO:0003676;nucleic acid binding;0.0073479022475476!GO:0045454;cell redox homeostasis;0.00742383136425984!GO:0004721;phosphoprotein phosphatase activity;0.00742383136425984!GO:0017166;vinculin binding;0.00822493683892193!GO:0051049;regulation of transport;0.00843175025104726!GO:0050828;regulation of liquid surface tension;0.0090339184327788!GO:0004674;protein serine/threonine kinase activity;0.00955340945213985!GO:0012502;induction of programmed cell death;0.00959907025593781!GO:0019838;growth factor binding;0.00961254894629102!GO:0007040;lysosome organization and biogenesis;0.00979659864976071!GO:0006644;phospholipid metabolic process;0.00980075983396698!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00981376881565908!GO:0015980;energy derivation by oxidation of organic compounds;0.0098376055188001!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00987364920043791!GO:0004812;aminoacyl-tRNA ligase activity;0.00987364920043791!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00987364920043791!GO:0005912;adherens junction;0.0102976930616906!GO:0030658;transport vesicle membrane;0.0105526575205089!GO:0006470;protein amino acid dephosphorylation;0.0106103012247439!GO:0055092;sterol homeostasis;0.0107439761556379!GO:0042632;cholesterol homeostasis;0.0107439761556379!GO:0001516;prostaglandin biosynthetic process;0.0107470837436299!GO:0046457;prostanoid biosynthetic process;0.0107470837436299!GO:0031326;regulation of cellular biosynthetic process;0.0107640652236031!GO:0005762;mitochondrial large ribosomal subunit;0.0111678804322522!GO:0000315;organellar large ribosomal subunit;0.0111678804322522!GO:0018193;peptidyl-amino acid modification;0.0114396102734574!GO:0043488;regulation of mRNA stability;0.0114967597039046!GO:0043487;regulation of RNA stability;0.0114967597039046!GO:0030132;clathrin coat of coated pit;0.0116304401899809!GO:0048660;regulation of smooth muscle cell proliferation;0.0117504314644238!GO:0001525;angiogenesis;0.0121129211745131!GO:0030134;ER to Golgi transport vesicle;0.0121307088781392!GO:0016740;transferase activity;0.0124146802304016!GO:0040011;locomotion;0.0124715477830112!GO:0007049;cell cycle;0.0128949543230841!GO:0005099;Ras GTPase activator activity;0.0130040815281204!GO:0016787;hydrolase activity;0.0130809700622061!GO:0009889;regulation of biosynthetic process;0.0131267387388261!GO:0048514;blood vessel morphogenesis;0.0131898900174146!GO:0006401;RNA catabolic process;0.0131898900174146!GO:0030659;cytoplasmic vesicle membrane;0.0138485000405344!GO:0006979;response to oxidative stress;0.013909562239016!GO:0048500;signal recognition particle;0.0139469177002989!GO:0050790;regulation of catalytic activity;0.0140078973108418!GO:0045637;regulation of myeloid cell differentiation;0.0140167118070566!GO:0003729;mRNA binding;0.0142987281492727!GO:0008287;protein serine/threonine phosphatase complex;0.0150412876657814!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0151167613700013!GO:0030127;COPII vesicle coat;0.0151167613700013!GO:0012507;ER to Golgi transport vesicle membrane;0.0151167613700013!GO:0018196;peptidyl-asparagine modification;0.0151167613700013!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0151167613700013!GO:0006607;NLS-bearing substrate import into nucleus;0.0155682643753987!GO:0030119;AP-type membrane coat adaptor complex;0.0156948872190446!GO:0006818;hydrogen transport;0.0158100685110911!GO:0040012;regulation of locomotion;0.0159001568325949!GO:0051271;negative regulation of cell motility;0.0162333113968858!GO:0015992;proton transport;0.0162491672208984!GO:0007033;vacuole organization and biogenesis;0.0165100929667018!GO:0004672;protein kinase activity;0.0165514471716574!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0167222448685798!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0174529687934022!GO:0005048;signal sequence binding;0.0174530581271084!GO:0051252;regulation of RNA metabolic process;0.0174796075100028!GO:0016584;nucleosome positioning;0.0174850888151111!GO:0043038;amino acid activation;0.0182697853243045!GO:0006418;tRNA aminoacylation for protein translation;0.0182697853243045!GO:0043039;tRNA aminoacylation;0.0182697853243045!GO:0055088;lipid homeostasis;0.0182819827953353!GO:0030155;regulation of cell adhesion;0.0182819827953353!GO:0009611;response to wounding;0.0185008575432489!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0185919527607016!GO:0033043;regulation of organelle organization and biogenesis;0.0185919527607016!GO:0030131;clathrin adaptor complex;0.0189684386617722!GO:0006516;glycoprotein catabolic process;0.0192601165057534!GO:0012506;vesicle membrane;0.0193033794803904!GO:0005813;centrosome;0.0195082679348067!GO:0022890;inorganic cation transmembrane transporter activity;0.0195179896415263!GO:0001889;liver development;0.019918591108136!GO:0008026;ATP-dependent helicase activity;0.0201138690212109!GO:0043021;ribonucleoprotein binding;0.021237128726056!GO:0045603;positive regulation of endothelial cell differentiation;0.0212603229645561!GO:0006891;intra-Golgi vesicle-mediated transport;0.021797876963655!GO:0001725;stress fiber;0.0223467115364969!GO:0032432;actin filament bundle;0.0223467115364969!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0223862374864031!GO:0004386;helicase activity;0.0224416420442215!GO:0031325;positive regulation of cellular metabolic process;0.0224875594746839!GO:0006509;membrane protein ectodomain proteolysis;0.0225220564129971!GO:0033619;membrane protein proteolysis;0.0225220564129971!GO:0003724;RNA helicase activity;0.0225790919314227!GO:0006611;protein export from nucleus;0.0225821990622454!GO:0006892;post-Golgi vesicle-mediated transport;0.0225821990622454!GO:0048487;beta-tubulin binding;0.0226882481428198!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0227156186467335!GO:0051235;maintenance of localization;0.0227210188728046!GO:0051287;NAD binding;0.0229055810753274!GO:0051020;GTPase binding;0.0229739542241424!GO:0044255;cellular lipid metabolic process;0.0229739542241424!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0229825959647679!GO:0005938;cell cortex;0.0232402529846404!GO:0007005;mitochondrion organization and biogenesis;0.0232897322501145!GO:0030674;protein binding, bridging;0.0237602359552881!GO:0046822;regulation of nucleocytoplasmic transport;0.0237602359552881!GO:0006414;translational elongation;0.0240400738704013!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0244423073030228!GO:0015002;heme-copper terminal oxidase activity;0.0244423073030228!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0244423073030228!GO:0004129;cytochrome-c oxidase activity;0.0244423073030228!GO:0050811;GABA receptor binding;0.0253517288983676!GO:0031901;early endosome membrane;0.0253517288983676!GO:0016859;cis-trans isomerase activity;0.0254426444352434!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0255995714851168!GO:0007162;negative regulation of cell adhesion;0.0255995714851168!GO:0006672;ceramide metabolic process;0.025665692757524!GO:0030660;Golgi-associated vesicle membrane;0.0266014652845926!GO:0008139;nuclear localization sequence binding;0.0270783397124997!GO:0031349;positive regulation of defense response;0.0271774282820039!GO:0050729;positive regulation of inflammatory response;0.0271774282820039!GO:0022415;viral reproductive process;0.0275990753615668!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0277095034862615!GO:0045047;protein targeting to ER;0.0277095034862615!GO:0004185;serine carboxypeptidase activity;0.0282482504300492!GO:0003702;RNA polymerase II transcription factor activity;0.0282482504300492!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0287800363487964!GO:0004860;protein kinase inhibitor activity;0.0288334134614912!GO:0008610;lipid biosynthetic process;0.0290276445651903!GO:0008305;integrin complex;0.0292632898696529!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0298476042905566!GO:0044433;cytoplasmic vesicle part;0.0300064928785272!GO:0002253;activation of immune response;0.0301493827384775!GO:0043407;negative regulation of MAP kinase activity;0.0304670657579917!GO:0051101;regulation of DNA binding;0.0304734053220373!GO:0046467;membrane lipid biosynthetic process;0.0310894889745265!GO:0004722;protein serine/threonine phosphatase activity;0.0312431735948477!GO:0008234;cysteine-type peptidase activity;0.0316337480971497!GO:0042127;regulation of cell proliferation;0.0317909520548501!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0317909520548501!GO:0017048;Rho GTPase binding;0.0317909520548501!GO:0030833;regulation of actin filament polymerization;0.0321033801645476!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0327296602236871!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0329572054933094!GO:0004177;aminopeptidase activity;0.0331049828535398!GO:0051338;regulation of transferase activity;0.0333546586079876!GO:0000059;protein import into nucleus, docking;0.0334789983416353!GO:0015630;microtubule cytoskeleton;0.0334915464267744!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0339133820538283!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0339133820538283!GO:0030663;COPI coated vesicle membrane;0.0340083609299459!GO:0030126;COPI vesicle coat;0.0340083609299459!GO:0003725;double-stranded RNA binding;0.0351074910491762!GO:0040013;negative regulation of locomotion;0.0352746359955359!GO:0009607;response to biotic stimulus;0.036258631500104!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0367042540448363!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0367042540448363!GO:0065004;protein-DNA complex assembly;0.0373913443732116!GO:0046474;glycerophospholipid biosynthetic process;0.0373913443732116!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0375658977955947!GO:0007034;vacuolar transport;0.0380934126053529!GO:0048659;smooth muscle cell proliferation;0.0382350944458952!GO:0031589;cell-substrate adhesion;0.0387430043264421!GO:0030125;clathrin vesicle coat;0.0390254508111057!GO:0030665;clathrin coated vesicle membrane;0.0390254508111057!GO:0004197;cysteine-type endopeptidase activity;0.0390254508111057!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0394372299169075!GO:0015629;actin cytoskeleton;0.0401299850860259!GO:0004563;beta-N-acetylhexosaminidase activity;0.0401299850860259!GO:0031267;small GTPase binding;0.0401299850860259!GO:0006026;aminoglycan catabolic process;0.0401299850860259!GO:0006027;glycosaminoglycan catabolic process;0.0401299850860259!GO:0000314;organellar small ribosomal subunit;0.0401703749842958!GO:0005763;mitochondrial small ribosomal subunit;0.0401703749842958!GO:0035035;histone acetyltransferase binding;0.0404420926655931!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.041009858863597!GO:0005637;nuclear inner membrane;0.0423744053939883!GO:0030832;regulation of actin filament length;0.0436026570391113!GO:0006898;receptor-mediated endocytosis;0.0444985571054851!GO:0045730;respiratory burst;0.0446387009602957!GO:0017091;AU-rich element binding;0.0450598199578232!GO:0050779;RNA destabilization;0.0450598199578232!GO:0000289;poly(A) tail shortening;0.0450598199578232!GO:0007041;lysosomal transport;0.0450598199578232!GO:0051248;negative regulation of protein metabolic process;0.0460090215958571!GO:0051087;chaperone binding;0.0466104409356388!GO:0032535;regulation of cellular component size;0.0471125991014625!GO:0008147;structural constituent of bone;0.0474826402584135!GO:0030384;phosphoinositide metabolic process;0.0475063158793463!GO:0030176;integral to endoplasmic reticulum membrane;0.0475973445462229!GO:0019834;phospholipase A2 inhibitor activity;0.0480489286538026!GO:0006633;fatty acid biosynthetic process;0.0480971283349039!GO:0006954;inflammatory response;0.0485860936905861!GO:0042254;ribosome biogenesis and assembly;0.0486033485618083!GO:0006690;icosanoid metabolic process;0.0486033485618083!GO:0045639;positive regulation of myeloid cell differentiation;0.0488120897115108!GO:0051015;actin filament binding;0.0488120897115108!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0490498942987631!GO:0046813;virion attachment, binding of host cell surface receptor;0.0490498942987631!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0490498942987631!GO:0006333;chromatin assembly or disassembly;0.0493889909261358!GO:0045646;regulation of erythrocyte differentiation;0.0493889909261358
 |sample_id=10075
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=lung
 |top_motifs=T:2.67750437093;EP300:2.54244965207;FOXA2:2.43394823451;HBP1_HMGB_SSRP1_UBTF:2.36518028195;RBPJ:2.18031464392;PRDM1:1.9726048157;HMX1:1.84943300332;SP1:1.62084475801;FOXD3:1.53140835867;TLX2:1.51823023672;MAZ:1.47277677713;FOX{D1,D2}:1.45668501446;TFCP2:1.45351464545;STAT2,4,6:1.42972036218;NKX3-2:1.42344225595;PAX6:1.42331804474;FOXP1:1.42173397669;GATA4:1.39970601513;IKZF2:1.37848811707;FOXO1,3,4:1.37379684021;RFX2..5_RFXANK_RFXAP:1.36914471952;FOX{I1,J2}:1.3269483109;AR:1.31820426104;TFAP2{A,C}:1.31410745036;NFATC1..3:1.27171855213;ETS1,2:1.2627019212;TOPORS:1.23175829982;IRF7:1.2276421346;SPZ1:1.21595923767;IRF1,2:1.17734731959;TFAP4:1.16356109261;TLX1..3_NFIC{dimer}:1.16257099427;HIC1:1.16081635297;AIRE:1.15729661245;XCPE1{core}:1.10169719712;MTE{core}:1.07915954504;SNAI1..3:1.07536667327;MED-1{core}:1.05828716778;GZF1:1.03209756147;ZEB1:0.990411819582;MTF1:0.985009817604;TFAP2B:0.983262933256;HAND1,2:0.970134892776;MZF1:0.94719128182;PITX1..3:0.936098668883;ZNF384:0.891799733814;BPTF:0.885437304798;PATZ1:0.877354414246;HOX{A6,A7,B6,B7}:0.836482231206;CDX1,2,4:0.810369966773;SMAD1..7,9:0.809870212122;FOX{F1,F2,J1}:0.791215869915;ESR1:0.784276414673;LMO2:0.782215611163;SPI1:0.76925633996;MYFfamily:0.769127692208;TEF:0.753807288422;TBP:0.721403141589;ZFP161:0.716856212711;GTF2I:0.713882012082;EGR1..3:0.68754723462;DMAP1_NCOR{1,2}_SMARC:0.668131944323;HNF4A_NR2F1,2:0.657587783434;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653979223325;POU2F1..3:0.651318690776;FOXN1:0.645171441433;SPIB:0.627490786846;TEAD1:0.621182352087;FOXL1:0.610273283088;TBX4,5:0.599535529197;ELF1,2,4:0.596444837565;RREB1:0.591549748883;ZBTB16:0.579195391065;XBP1:0.55456754315;ALX1:0.540074827991;RXR{A,B,G}:0.532270138801;FOXQ1:0.497091562092;MYBL2:0.491037605809;SRF:0.451552000445;NFIL3:0.437585160193;RFX1:0.427841139981;GLI1..3:0.423388556961;ATF2:0.413745816124;SOX5:0.39687718083;SREBF1,2:0.355476030272;NR6A1:0.355413530579;NR3C1:0.348138380867;PAX5:0.312042953319;NKX3-1:0.287592166125;FOXP3:0.285851561199;MYOD1:0.275138614924;GTF2A1,2:0.274545396071;TGIF1:0.259854651328;IKZF1:0.252425056959;ZNF423:0.245355415565;EBF1:0.200093330393;UFEwm:0.196842021342;ALX4:0.196781802675;HNF1A:0.167432314616;CEBPA,B_DDIT3:0.16491785608;RUNX1..3:0.153624627829;NKX6-1,2:0.143496253727;NFIX:0.143416630555;NR1H4:0.108204734207;ARID5B:0.0713478814093;POU5F1:0.0654161575821;REST:0.0252032216525;BREu{core}:0.0244436654159;RXRA_VDR{dimer}:0.0218131436076;ZIC1..3:0.0200917901839;KLF4:0.01593565393;MEF2{A,B,C,D}:0.00240338068469;ZNF148:-0.0119072506261;TAL1_TCF{3,4,12}:-0.0209587211177;ATF6:-0.0465232572954;GFI1B:-0.0470941725642;GATA6:-0.0621106895104;HMGA1,2:-0.0666440395651;NKX2-3_NKX2-5:-0.0928577581687;HLF:-0.0947315257588;STAT5{A,B}:-0.117748199352;ATF4:-0.151827057443;NANOG:-0.175996243987;STAT1,3:-0.198286205323;GCM1,2:-0.22248628569;SOX{8,9,10}:-0.23392986476;SOX2:-0.305340679416;CDC5L:-0.310648192044;TFDP1:-0.343843826693;NFKB1_REL_RELA:-0.364856554212;HSF1,2:-0.404166751629;DBP:-0.407088364743;LHX3,4:-0.423651475678;JUN:-0.444176783896;CREB1:-0.445665232988;MAFB:-0.450809544104;ATF5_CREB3:-0.453472139252;NKX2-1,4:-0.459011132757;TP53:-0.461099742013;PPARG:-0.466362089947;EVI1:-0.472745951225;POU3F1..4:-0.530533712686;POU1F1:-0.531506864417;NHLH1,2:-0.544307716598;PAX8:-0.548157987306;AHR_ARNT_ARNT2:-0.565276516888;ZNF238:-0.583330711955;PAX2:-0.591878180925;NANOG{mouse}:-0.662672428301;NFE2L1:-0.702125853186;ZBTB6:-0.715031037919;CUX2:-0.715509626149;FOSL2:-0.738877785953;GFI1:-0.741642429487;ONECUT1,2:-0.743232506365;EN1,2:-0.769118435226;PAX4:-0.788622319248;HIF1A:-0.838812308228;HES1:-0.849574827799;HOX{A4,D4}:-0.850647697598;NFE2:-0.856455268721;ZNF143:-0.887842480288;FOS_FOS{B,L1}_JUN{B,D}:-0.978438654492;PAX3,7:-0.988451770766;PAX1,9:-0.993355356008;PRRX1,2:-0.995577336352;NR5A1,2:-1.06291062288;BACH2:-1.06687063993;NFY{A,B,C}:-1.09508770102;NRF1:-1.09566524142;NFE2L2:-1.10410178979;PBX1:-1.10659343958;OCT4_SOX2{dimer}:-1.15493987139;NKX2-2,8:-1.18001474358;HOXA9_MEIS1:-1.2095836964;POU6F1:-1.22137511159;E2F1..5:-1.24799162201;bHLH_family:-1.29468058772;HOX{A5,B5}:-1.31052954398;ESRRA:-1.33277299076;LEF1_TCF7_TCF7L1,2:-1.39308146125;SOX17:-1.46088139845;MYB:-1.50105749357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.54664940342;FOXM1:-1.58948483212;CRX:-1.63433595765;ADNP_IRX_SIX_ZHX:-1.64025395809;ELK1,4_GABP{A,B1}:-1.68792358782;VSX1,2:-1.78545933958;RORA:-1.87231809356;PDX1:-1.91404920707;YY1:-1.97523221842
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10075-102A3;search_select_hide=table117:FF:10075-102A3
 }}

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FF:10075-102A3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0