FF:10062-101H8: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	stomach, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11771
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	40 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	A805052
catalog number	Cat:RtHFN: Stomach
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005331

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11771		CAGE		DRX008732		DRR009604

Accession ID Hg19

Library id		BAM		CTSS
CNhs11771		DRZ001029		DRZ002414

Accession ID Hg38

Library id		BAM		CTSS
CNhs11771		DRZ012379		DRZ013764

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0144
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0991
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.238
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.504
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.159
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.125
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.241
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.211
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.238
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	1.48
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.00859
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.164
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.119
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.22
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.238
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.504
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.391
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.238
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.391
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11771

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.99126e-4
MA0003.1	MA0003.1	0.767
MA0004.1	MA0004.1	0.214
MA0006.1	MA0006.1	0.277
MA0007.1	MA0007.1	0.733
MA0009.1	MA0009.1	0.703
MA0014.1	MA0014.1	0.441
MA0017.1	MA0017.1	0.606
MA0018.2	MA0018.2	0.172
MA0019.1	MA0019.1	0.764
MA0024.1	MA0024.1	0.536
MA0025.1	MA0025.1	0.504
MA0027.1	MA0027.1	0.948
MA0028.1	MA0028.1	4.10197e-4
MA0029.1	MA0029.1	0.301
MA0030.1	MA0030.1	0.00528
MA0031.1	MA0031.1	0.0331
MA0035.2	MA0035.2	0.0469
MA0038.1	MA0038.1	0.901
MA0039.2	MA0039.2	0.937
MA0040.1	MA0040.1	0.745
MA0041.1	MA0041.1	0.995
MA0042.1	MA0042.1	0.893
MA0043.1	MA0043.1	0.472
MA0046.1	MA0046.1	1.66668e-17
MA0047.2	MA0047.2	5.08202e-7
MA0048.1	MA0048.1	0.233
MA0050.1	MA0050.1	0.338
MA0051.1	MA0051.1	0.217
MA0052.1	MA0052.1	0.00762
MA0055.1	MA0055.1	0.0377
MA0057.1	MA0057.1	0.793
MA0058.1	MA0058.1	0.0584
MA0059.1	MA0059.1	0.00594
MA0060.1	MA0060.1	0.943
MA0061.1	MA0061.1	0.00294
MA0062.2	MA0062.2	7.74459e-6
MA0065.2	MA0065.2	0.0354
MA0066.1	MA0066.1	0.00244
MA0067.1	MA0067.1	0.098
MA0068.1	MA0068.1	0.0401
MA0069.1	MA0069.1	0.531
MA0070.1	MA0070.1	0.512
MA0071.1	MA0071.1	0.326
MA0072.1	MA0072.1	0.226
MA0073.1	MA0073.1	0.447
MA0074.1	MA0074.1	0.596
MA0076.1	MA0076.1	1.91476e-5
MA0077.1	MA0077.1	0.535
MA0078.1	MA0078.1	0.64
MA0079.2	MA0079.2	0.329
MA0080.2	MA0080.2	0.0137
MA0081.1	MA0081.1	0.00391
MA0083.1	MA0083.1	6.51111e-7
MA0084.1	MA0084.1	0.573
MA0087.1	MA0087.1	0.211
MA0088.1	MA0088.1	0.00948
MA0090.1	MA0090.1	0.155
MA0091.1	MA0091.1	0.337
MA0092.1	MA0092.1	0.663
MA0093.1	MA0093.1	0.181
MA0099.2	MA0099.2	1.78894e-9
MA0100.1	MA0100.1	0.0985
MA0101.1	MA0101.1	0.0168
MA0102.2	MA0102.2	0.625
MA0103.1	MA0103.1	0.363
MA0104.2	MA0104.2	0.00298
MA0105.1	MA0105.1	9.60675e-8
MA0106.1	MA0106.1	0.00323
MA0107.1	MA0107.1	0.0236
MA0108.2	MA0108.2	5.93165e-16
MA0111.1	MA0111.1	0.851
MA0112.2	MA0112.2	0.0111
MA0113.1	MA0113.1	0.118
MA0114.1	MA0114.1	0.177
MA0115.1	MA0115.1	0.106
MA0116.1	MA0116.1	8.7531e-5
MA0117.1	MA0117.1	0.499
MA0119.1	MA0119.1	0.683
MA0122.1	MA0122.1	0.69
MA0124.1	MA0124.1	0.742
MA0125.1	MA0125.1	0.798
MA0131.1	MA0131.1	0.805
MA0135.1	MA0135.1	0.234
MA0136.1	MA0136.1	4.94018e-4
MA0137.2	MA0137.2	0.979
MA0138.2	MA0138.2	0.745
MA0139.1	MA0139.1	0.00878
MA0140.1	MA0140.1	0.802
MA0141.1	MA0141.1	0.0632
MA0142.1	MA0142.1	0.0351
MA0143.1	MA0143.1	0.19
MA0144.1	MA0144.1	0.675
MA0145.1	MA0145.1	0.835
MA0146.1	MA0146.1	0.199
MA0147.1	MA0147.1	0.00244
MA0148.1	MA0148.1	5.14874e-4
MA0149.1	MA0149.1	0.231
MA0150.1	MA0150.1	4.15711e-4
MA0152.1	MA0152.1	0.211
MA0153.1	MA0153.1	5.39602e-9
MA0154.1	MA0154.1	0.0018
MA0155.1	MA0155.1	0.76
MA0156.1	MA0156.1	2.46114e-4
MA0157.1	MA0157.1	0.81
MA0159.1	MA0159.1	0.0488
MA0160.1	MA0160.1	0.203
MA0162.1	MA0162.1	0.405
MA0163.1	MA0163.1	2.91172e-9
MA0164.1	MA0164.1	0.103
MA0258.1	MA0258.1	0.171
MA0259.1	MA0259.1	0.129

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11771

Novel motif	Logo	P-value
1	1	0.0114
10	10	0.0421
100	100	0.221
101	101	0.614
102	102	0.505
103	103	0.0306
104	104	0.901
105	105	0.686
106	106	0.875
107	107	0.193
108	108	0.607
109	109	0.0316
11	11	0.0682
110	110	0.0429
111	111	0.0855
112	112	0.345
113	113	0.00194
114	114	0.00138
115	115	0.719
116	116	0.745
117	117	0.00542
118	118	0.025
119	119	0.642
12	12	0.581
120	120	0.00987
121	121	0.795
122	122	0.834
123	123	0.324
124	124	0.357
125	125	0.126
126	126	0.66
127	127	0.0263
128	128	0.253
129	129	0.246
13	13	0.0727
130	130	0.892
131	131	0.98
132	132	0.0678
133	133	0.0643
134	134	0.454
135	135	0.926
136	136	0.885
137	137	0.213
138	138	0.974
139	139	0.298
14	14	0.655
140	140	0.686
141	141	0.968
142	142	0.515
143	143	0.0046
144	144	0.7
145	145	0.7
146	146	0.73
147	147	0.987
148	148	0.231
149	149	0.231
15	15	0.0909
150	150	0.515
151	151	0.852
152	152	0.65
153	153	0.878
154	154	0.704
155	155	0.369
156	156	0.917
157	157	0.555
158	158	0.443
159	159	0.367
16	16	0.171
160	160	0.209
161	161	0.385
162	162	0.912
163	163	0.925
164	164	0.0223
165	165	0.508
166	166	0.44
167	167	0.124
168	168	0.367
169	169	0.132
17	17	0.943
18	18	0.00446
19	19	0.91
2	2	0.38
20	20	0.258
21	21	0.0757
22	22	0.527
23	23	0.601
24	24	0.0496
25	25	0.335
26	26	0.494
27	27	0.53
28	28	0.807
29	29	0.00666
3	3	0.0837
30	30	0.133
31	31	0.908
32	32	0.0704
33	33	0.113
34	34	0.364
35	35	0.0781
36	36	0.0172
37	37	0.046
38	38	0.691
39	39	0.835
4	4	0.586
40	40	0.163
41	41	0.0251
42	42	0.184
43	43	0.195
44	44	0.174
45	45	0.662
46	46	0.071
47	47	0.0349
48	48	0.117
49	49	0.296
5	5	0.326
50	50	0.485
51	51	0.817
52	52	0.17
53	53	0.646
54	54	0.765
55	55	0.377
56	56	0.548
57	57	0.28
58	58	0.397
59	59	0.298
6	6	0.321
60	60	0.784
61	61	0.836
62	62	0.202
63	63	0.657
64	64	0.368
65	65	0.968
66	66	0.175
67	67	0.0914
68	68	0.587
69	69	0.695
7	7	0.463
70	70	0.0411
71	71	0.0173
72	72	0.417
73	73	0.326
74	74	0.15
75	75	0.0089
76	76	0.0975
77	77	0.769
78	78	0.845
79	79	0.149
8	8	0.167
80	80	0.47
81	81	0.169
82	82	0.0823
83	83	0.717
84	84	0.731
85	85	0.824
86	86	0.32
87	87	0.0673
88	88	0.791
89	89	0.0535
9	9	0.797
90	90	0.0227
91	91	0.879
92	92	0.945
93	93	0.0267
94	94	0.00883
95	95	0.0382
96	96	0.885
97	97	0.314
98	98	0.2
99	99	0.427

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11771

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010062 human stomach - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010062 (human stomach - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005331
+|accession_numbers=CAGE;DRX008732;DRR009604;DRZ001029;DRZ002414;DRZ012379;DRZ013764
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.33!211.07!HIF3A;;chr6:1312325..1312340,+!p1@FOXQ1!2.30!319.16!FOXQ1;;chr4:174451370..174451387,-!p1@HAND2!2.13!132.92!HAND2;;chr16:86544113..86544145,+!p1@FOXF1!2.00!120.51!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.95!88.37!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.94!176.01!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.85!70.11!ELF3;;chr18:19749541..19749557,+!p1@GATA6!1.83!201.57!GATA6;;chr19:46800289..46800327,+!p2@HIF3A!1.76!56.24!HIF3A;;chr11:113930425..113930471,+!p1@ZBTB16!1.75!78.15!ZBTB16;;chr2:122042770..122042785,-!p1@TFCP2L1!1.75!55.51!TFCP2L1;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.12!TCF21;;chr5:50679228..50679288,+!p1@ISL1!1.70!48.93!ISL1;;chr4:174451350..174451363,-!p3@HAND2!1.69!47.47!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.68!46.74!PEG3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.01!ZBED1;;chr3:169381420..169381535,-!p1@MECOM!1.63!48.20!MECOM;;chr3:12330560..12330579,+!p1@PPARG!1.62!46.74!PPARG;;chr9:96717629..96717644,-!p1@BARX1!1.62!40.90!BARX1;;chr1:27240455..27240474,-!p1@NR0B2!1.57!35.79!NR0B2;;chr16:85932760..85932775,+!p1@IRF8!1.56!35.06!IRF8;;chr14:38064429..38064486,-!p1@FOXA1!1.53!32.87!FOXA1;;chr20:62680984..62680999,-!p1@SOX18!1.51!41.63!SOX18;;chr19:46367576..46367592,+!p1@FOXA3!1.51!31.40!FOXA3;;chr20:50179368..50179392,-!p2@NFATC2!1.47!36.52!NFATC2;;chr1:216896780..216896800,-!p2@ESRRG!1.47!28.48!ESRRG;;chr11:34642612..34642646,+!p1@EHF!1.46!27.75!EHF;;chr18:45663490..45663528,-!p2@ZBTB7C!1.45!27.02!ZBTB7C;;chr19:54041669..54041697,+!p2@ZNF331!1.44!26.29!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.29!HEYL;;chr18:19749517..19749531,+!p3@GATA6!1.42!44.55!GATA6;;chr8:106330656..106330684,+!p1@ZFPM2!1.40!62.08!ZFPM2;;chr1:61548225..61548299,+!p1@NFIA!1.38!292.86!NFIA;;chr13:72441315..72441454,-!p1@DACH1!1.37!43.82!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.33!20.45!SPDEF;;chr11:113930401..113930422,+!p3@ZBTB16!1.32!19.72!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.40!TCF12;;chr2:157189180..157189290,-!p1@NR4A2!1.29!93.48!NR4A2;;chr6:1389789..1389821,+!p1@FOXF2!1.29!25.56!FOXF2;;chr19:46806868..46806883,+!p3@HIF3A!1.28!18.26!HIF3A;;chr20:42984330..42984364,+!p2@HNF4A!1.28!18.26!HNF4A;;chr8:11561684..11561751,+!p1@GATA4!1.27!17.53!GATA4;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.99!IRF6;;chr20:50159198..50159299,-!p1@NFATC2!1.24!24.10!NFATC2;;chr8:102504651..102504683,+!p1@GRHL2!1.23!16.07!GRHL2;;chr15:96873984..96873999,+!p3@NR2F2!1.22!112.47!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.21!21.18!PROX1;;chr1:151804244..151804310,-!p1@RORC!1.21!15.34!RORC;;chr19:54058073..54058088,+!p1@ZNF331!1.19!14.61!ZNF331;;chr12:52445218..52445237,+!p1@NR4A1!1.18!176.74!NR4A1;;chr2:66662281..66662308,+!p1@MEIS1!1.17!47.47!MEIS1;;chr9:14314131..14314147,-!p2@NFIB!1.15!72.30!NFIB;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.26!KLF15;;chr1:216896752..216896778,-!p1@ESRRG!1.15!13.15!ESRRG;;chr19:16435625..16435682,+!p1@KLF2!1.13!396.57!KLF2;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!329.38!TSC22D3;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.81!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.12!30.67!EBF1;;chrX:131623044..131623089,-!p1@MBNL3!1.11!49.66!MBNL3;;chr7:113726357..113726443,+!p1@FOXP2!1.11!20.45!FOXP2;;chr1:164528687..164528711,+!p6@PBX1!1.11!13.88!PBX1;;chr2:60780753..60780800,-!p1@BCL11A!1.10!57.70!BCL11A;;chr1:61547894..61547968,+!p2@NFIA!1.10!33.60!NFIA;;chr13:72441074..72441172,-!p2@DACH1!1.10!11.69!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!1.10!11.69!HOXA3;;chr2:43453734..43453751,-!p1@ZFP36L2!1.09!1187.53!ZFP36L2;;chr18:19749386..19749404,+!p2@GATA6!1.09!16.07!GATA6;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.67!OSR1;;chr3:69915385..69915438,+!p3@MITF!1.08!10.96!MITF;;chr8:25902876..25902936,-!p1@EBF2!1.08!10.96!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.08!10.96!FOXA2;;chr8:60031682..60031710,-!p2@TOX!1.07!17.53!TOX;;chr8:60031619..60031676,-!p1@TOX!1.06!22.64!TOX;;chr15:37390850..37390909,-!p3@MEIS2!1.05!20.45!MEIS2;;chr1:10856639..10856662,-!p2@CASZ1!1.05!10.22!CASZ1;;chr4:174450089..174450153,-!p2@HAND2!1.05!10.22!HAND2;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.34!PITX1;;chr3:42947600..42947680,+!p1@ZNF662!1.04!14.61!ZNF662;;chr15:96873921..96873946,+!p1@NR2F2!1.03!275.34!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.02!111.01!PLAGL1;;chr3:24536253..24536328,-!p1@THRB!1.02!18.26!THRB;;chr8:55370487..55370503,+!p1@SOX17!1.02!9.49!SOX17;;chr3:12329397..12329433,+!p2@PPARG!1.01!21.18!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.01!11.69!KLF15;;chr4:38665810..38665827,+!p1@KLF3!1.00!134.38!KLF3;;chr6:91006575..91006602,-!p2@BACH2!0.99!13.15!BACH2;;chr22:38380543..38380569,-!p1@SOX10!0.99!8.76!SOX10;;chr1:209979411..209979433,-!p2@IRF6!0.99!8.76!IRF6;;chr13:73633131..73633149,+!p1@KLF5!0.98!94.21!KLF5;;chr14:33408072..33408114,+!p2@NPAS3!0.98!10.22!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.96!32.87!MAF;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10062-101H8
 |is_a=EFO:0002091;;FF:0010062
 |is_obsolete=
+|library_id=CNhs11771
+|library_id_phase_based=2:CNhs11771
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10062
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10062
 |name=stomach, fetal, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11771,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 61: / Line 79: @@
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@@ Line 82: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10062-101H8;search_select_hide=table117:FF:10062-101H8
 }}

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FF:10062-101H8: Difference between revisions

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Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0