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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005303
|HumanCAGEScanFiles=NCig10020;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/lung%252c%2520adult%252c%2520pool1.NCig10020.10019-101D1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/lung%252c%2520adult%252c%2520pool1.NCig10020.10019-101D1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/lung%252c%2520adult%252c%2520pool1.NCig10020.10019-101D1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/lung%252c%2520adult%252c%2520pool1.NCig10020.10019-101D1.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008678;DRR009550;DRZ000975;DRZ002360;DRZ012325;DRZ013710
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002048,UBERON:0002100,UBERON:0000479,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000117,UBERON:0000171,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.97!935.35!HOPX;;chr6:134210243..134210257,+!p1@TCF21!2.53!341.61!TCF21;;chr11:47400078..47400106,-!p1@SPI1!2.16!144.38!SPI1;;chr16:86544113..86544145,+!p1@FOXF1!1.97!113.84!FOXF1;;chr8:10588010..10588030,-!p1@SOX7!1.97!93.33!SOX7;;chr19:46801639..46801699,+!p1@HIF3A!1.81!63.22!HIF3A;;chr1:201979703..201979721,+!p2@ELF3!1.80!62.36!ELF3;;chr20:62680984..62680999,-!p1@SOX18!1.77!75.29!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.72!51.26!EHF;;chr21:39870339..39870443,-!p1@ERG!1.66!45.17!ERG;;chr2:68592406..68592424,+!p1@PLEK!1.64!43.14!PLEK;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.90!GATA2;;chr17:59529743..59529798,+!p1@TBX4!1.61!40.05!TBX4;;chr2:46524537..46524553,+!p1@EPAS1!1.59!3492.06!EPAS1;;chr16:85932760..85932775,+!p1@IRF8!1.59!38.02!IRF8;;chr1:40105299..40105326,-!p1@HEYL!1.58!37.16!HEYL;;chr5:2751762..2751784,-!p1@IRX2!1.56!35.67!IRX2;;chr11:113930425..113930471,+!p1@ZBTB16!1.55!49.02!ZBTB16;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.49!ELF3;;chr18:53068911..53068935,-!p4@TCF4!1.52!36.52!TCF4;;chr12:52445218..52445237,+!p1@NR4A1!1.51!375.89!NR4A1;;chr17:6926362..6926377,+!p1@BCL6B!1.50!30.54!BCL6B;;chr11:47400062..47400077,-!p2@SPI1!1.46!27.98!SPI1;;chr8:55370487..55370503,+!p1@SOX17!1.42!25.42!SOX17;;chr17:59477233..59477263,+!p1@TBX2!1.41!75.50!TBX2;;chr12:52437488..52437507,+!p2@NR4A1!1.40!24.35!NR4A1;;chr3:12330560..12330579,+!p1@PPARG!1.38!26.48!PPARG;;chr7:115670804..115670825,-!p1@TFEC!1.36!21.89!TFEC;;chr11:113930291..113930339,+!p2@ZBTB16!1.35!34.28!ZBTB16;;chr11:61520075..61520136,+!p1@C11orf9!1.34!43.89!C11orf9;;chr17:74137321..74137337,-!p1@FOXJ1!1.34!21.04!FOXJ1;;chr3:169381420..169381535,-!p1@MECOM!1.33!23.71!MECOM;;chr5:71803177..71803255,-!p1@ZNF366!1.32!19.97!ZNF366;;chrX:106960285..106960299,-!p1@TSC22D3!1.31!500.51!TSC22D3;;chr20:22564895..22564910,-!p1@FOXA2!1.30!18.79!FOXA2;;chr9:102584159..102584174,+!p2@NR4A3!1.29!33.10!NR4A3;;chr14:74256787..74256858,-!p6@C14orf43!1.29!18.58!C14orf43;;chr20:39317868..39317884,-!p1@MAFB!1.27!202.90!MAFB;;chr7:15726296..15726315,-!p1@MEOX2!1.25!16.98!MEOX2;;chr6:106546808..106546833,+!p3@PRDM1!1.24!20.72!PRDM1;;chr17:59477197..59477212,+!p2@TBX2!1.23!27.34!TBX2;;chr2:46524865..46524870,+!p9@EPAS1!1.23!18.58!EPAS1;;chr13:72441315..72441454,-!p1@DACH1!1.21!30.22!DACH1;;chr5:2751785..2751808,-!p2@IRX2!1.21!15.06!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.20!16.55!IRF6;;chr12:54778471..54778528,-!p1@ZNF385A!1.20!14.74!ZNF385A;;chr1:25256756..25256774,-!p1@RUNX3!1.18!26.27!RUNX3;;chr15:42749722..42749739,-!p2@ZFP106!1.17!24.67!ZFP106;;chr7:14028488..14028516,-!p2@ETV1!1.17!15.38!ETV1;;chr19:16435625..16435682,+!p1@KLF2!1.16!427.36!KLF2;;chr9:73028814..73028895,-!p1@KLF9!1.15!127.40!KLF9;;chr10:35484053..35484076,+!p1@CREM!1.15!32.57!CREM;;chr7:27183291..27183324,-!p1@HOXA5!1.15!13.03!HOXA5;;chr2:46524897..46524911,+!p2@EPAS1!1.14!35.77!EPAS1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.14!12.92!TFCP2L1;;chr17:59477275..59477286,+!p3@TBX2!1.13!16.77!TBX2;;chr17:53342311..53342400,+!p1@HLF!1.13!14.20!HLF;;chr18:53177984..53178004,-!p17@TCF4!1.12!12.07!TCF4;;chr5:88178983..88179012,-!p1@MEF2C!1.10!90.77!MEF2C;;chr6:126240380..126240430,+!p2@NCOA7!1.10!29.90!NCOA7;;chr11:113930401..113930422,+!p3@ZBTB16!1.10!11.64!ZBTB16;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.07!MXD1;;chr6:1389789..1389821,+!p1@FOXF2!1.09!15.59!FOXF2;;chr6:19837592..19837621,+!p1@ID4!1.08!67.17!ID4;;chr7:15726243..15726293,-!p2@MEOX2!1.08!11.11!MEOX2;;chr22:41763452..41763466,+!p2@TEF!1.08!11.00!TEF;;chr14:38064429..38064486,-!p1@FOXA1!1.08!10.89!FOXA1;;chr19:33793430..33793447,-!p1@CEBPA!1.07!45.28!CEBPA;;chr6:126240442..126240459,+!p4@NCOA7!1.07!13.88!NCOA7;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.68!KDM5D;;chr6:391743..391759,+!p1@IRF4!1.06!10.47!IRF4;;chr18:19749541..19749557,+!p1@GATA6!1.05!32.68!GATA6;;chr2:145277882..145277967,-!p3@ZEB2!1.04!17.51!ZEB2;;chr3:126076242..126076257,-!p1@KLF15!1.03!12.07!KLF15;;chr14:36988564..36988601,-!p7@NKX2-1!1.03!9.82!NKX2-1;;chr3:27763807..27763822,-!p1@EOMES!1.03!9.72!EOMES;;chr19:54041669..54041697,+!p2@ZNF331!1.03!9.61!ZNF331;;chr22:38597987..38598021,+!p2@MAFF!1.02!58.41!MAFF;;chr16:79634624..79634642,-!p1@MAF!1.02!37.91!MAF;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.57!NR1H3;;chr2:192015701..192015743,-!p1@STAT4!1.02!13.13!STAT4;;chr19:54058073..54058088,+!p1@ZNF331!1.02!9.40!ZNF331;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.74!OSR1;;chr1:10754477..10754517,-!p1@CASZ1!1.01!15.70!CASZ1;;chr6:1312325..1312340,+!p1@FOXQ1!1.01!15.16!FOXQ1;;chr7:27183263..27183284,-!p2@HOXA5!1.01!9.18!HOXA5;;chr3:39195075..39195088,-!p1@CSRNP1!1.00!58.31!CSRNP1;;chr5:92918919..92918942,+!p1@NR2F1!1.00!41.01!NR2F1;;chr11:128392273..128392308,-!p2@ETS1!1.00!39.08!ETS1;;chr8:80679993..80680011,-!p1@HEY1!0.99!12.92!HEY1;;chr3:126076264..126076305,-!p2@KLF15!0.99!12.49!KLF15;;chr11:111249993..111250006,-!p1@POU2AF1!0.99!8.76!POU2AF1;;chr2:46524878..46524891,+!p3@EPAS1!0.98!15.27!EPAS1;;chr20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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520adult%252c%2520pool1.CNhs10625.10019-101D1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520adult%252c%2520pool1.CNhs10625.10019-101D1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lung%252c%2520adult%252c%2520pool1.CNhs10625.10019-101D1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520adult%252c%2520pool1.CNhs10625.10019-101D1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lung%252c%2520adult%252c%2520pool1.CNhs10625.10019-101D1.hg38.nobarcode.ctss.bed.gz
|id=FF:10019-101D1
|id=FF:10019-101D1
|is_a=EFO:0002091;;FF:0010019
|is_a=EFO:0002091;;FF:0010019
|is_obsolete=
|is_obsolete=
|library_id=CNhs10625
|library_id_phase_based=2:CNhs10625
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10019
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10019
|name=lung, adult, pool1
|name=lung, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 62:
|profile_cagescan=NCig10020,,,
|profile_cagescan=NCig10020,,,
|profile_hcage=CNhs10625,LSID657,release008,COMPLETED
|profile_hcage=CNhs10625,LSID657,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 85: Line 102:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.43874378994;SP1:2.38762220825;FOXA2:2.38316416028;FOX{D1,D2}:2.31703325094;EP300:2.27877076863;STAT2,4,6:2.24879169102;TLX2:2.21225730851;NFATC1..3:2.11689228227;TBP:2.04514480074;MAZ:2.0207806586;AR:2.01307183663;FOX{I1,J2}:1.98610572625;FOX{F1,F2,J1}:1.97267424197;T:1.82827012686;TFAP4:1.79765716879;FOXO1,3,4:1.75697702119;TFCP2:1.7284235757;TBX4,5:1.63554904515;RFX2..5_RFXANK_RFXAP:1.51713758655;TLX1..3_NFIC{dimer}:1.46970588395;ETS1,2:1.46825486643;HMX1:1.38253497082;SPZ1:1.36766488951;IRF1,2:1.35974074817;SRF:1.27534818581;NKX3-2:1.27323235278;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24649145633;XCPE1{core}:1.22109775601;PATZ1:1.20100577608;POU2F1..3:1.19433880349;MYFfamily:1.1582235875;SNAI1..3:1.15640546762;IRF7:1.13975721125;ZNF148:1.08359664563;PRDM1:1.07162845255;MZF1:1.06463147149;ZEB1:1.04097779129;MTF1:1.02265016654;SMAD1..7,9:1.00792633245;MTE{core}:0.986894119971;GTF2I:0.961668698282;TFAP2{A,C}:0.932143889456;MED-1{core}:0.919847418877;ZNF238:0.906427550187;JUN:0.899971644615;GATA6:0.850704704738;TGIF1:0.842139589594;EGR1..3:0.823247628252;HOX{A6,A7,B6,B7}:0.780314217396;ATF2:0.776696551816;HSF1,2:0.771138567424;SPIB:0.763598864479;GZF1:0.757459590434;ZNF423:0.738153429706;RBPJ:0.723765892217;HAND1,2:0.719535464464;MEF2{A,B,C,D}:0.71773329311;FOXN1:0.708137842658;SOX5:0.689134467156;HNF1A:0.688482065336;STAT1,3:0.67477818232;IKZF2:0.672613468592;HIC1:0.653118106932;TEAD1:0.647771437963;NANOG:0.629946001014;PAX1,9:0.616805991026;ATF6:0.59955696063;TFAP2B:0.593186752543;GTF2A1,2:0.589862704013;RFX1:0.574974139082;PAX6:0.571625225393;SPI1:0.568814981565;RUNX1..3:0.567552008739;NR3C1:0.559911575509;IKZF1:0.549752310328;SREBF1,2:0.520288494774;NR1H4:0.501845107924;GATA4:0.473467660996;FOXL1:0.462218882665;ZFP161:0.431950695237;GCM1,2:0.415429095315;XBP1:0.413900927555;MYBL2:0.405174165542;MYOD1:0.399568827937;EBF1:0.372418253717;HNF4A_NR2F1,2:0.371126609682;DMAP1_NCOR{1,2}_SMARC:0.369167534939;POU5F1:0.366205129376;HES1:0.363597986083;NR6A1:0.354100925493;ELF1,2,4:0.342659202327;HLF:0.334437825586;MAFB:0.247579442785;CEBPA,B_DDIT3:0.245099451361;RREB1:0.221385547296;BPTF:0.216337686371;FOXP3:0.199414728128;GFI1B:0.191509810062;ATF4:0.175856258316;ESR1:0.15499237449;PAX5:0.148186124626;GLI1..3:0.141824820239;FOXQ1:0.136141798868;NKX2-3_NKX2-5:0.129001040138;LMO2:0.114420119464;REST:0.101250784899;ZIC1..3:0.0837786102212;NFKB1_REL_RELA:0.0804142701143;HMGA1,2:0.0471235257147;NFIL3:0.0470803539826;NKX2-1,4:0.0460959777539;DBP:0.0455169496791;SOX2:0.00440236141573;NHLH1,2:-0.00248084504343;BREu{core}:-0.0175312346638;RXR{A,B,G}:-0.0274703358593;ALX4:-0.0322763819488;CDC5L:-0.0652553255988;FOSL2:-0.0731625307167;NFIX:-0.0779530921116;CREB1:-0.0873429135743;CDX1,2,4:-0.118876464644;SOX{8,9,10}:-0.129697031739;STAT5{A,B}:-0.13448782582;ATF5_CREB3:-0.186522327526;KLF4:-0.198747957544;NFE2:-0.213148310706;FOXD3:-0.224447402728;NFY{A,B,C}:-0.280595983547;PBX1:-0.283810734075;bHLH_family:-0.347182813973;POU3F1..4:-0.362479127144;ESRRA:-0.398373551325;ALX1:-0.416328320862;HIF1A:-0.418648300055;NFE2L2:-0.419191817341;FOS_FOS{B,L1}_JUN{B,D}:-0.426520659857;TAL1_TCF{3,4,12}:-0.437848627563;NR5A1,2:-0.444059718529;NANOG{mouse}:-0.449919702959;PAX2:-0.458425102138;BACH2:-0.477106762031;LEF1_TCF7_TCF7L1,2:-0.481416987099;ADNP_IRX_SIX_ZHX:-0.487466160354;UFEwm:-0.491210133331;RXRA_VDR{dimer}:-0.546145191377;TP53:-0.548110154229;AHR_ARNT_ARNT2:-0.584866677513;NKX2-2,8:-0.590350072144;SOX17:-0.600671320403;AIRE:-0.600994080903;PITX1..3:-0.615870112233;GFI1:-0.620427276295;FOXP1:-0.634023852334;TFDP1:-0.646496636144;NFE2L1:-0.665504688756;ARID5B:-0.709443636567;NKX6-1,2:-0.766570163731;MYB:-0.769550236791;CUX2:-0.77592750073;PPARG:-0.786056263247;ZBTB6:-0.793138072558;NKX3-1:-0.807029828949;TEF:-0.816321494693;PRRX1,2:-0.846424686661;EN1,2:-0.864736890572;ZNF143:-0.90920068023;POU6F1:-0.983461422633;E2F1..5:-0.991474866741;ZNF384:-0.999897144133;ZBTB16:-1.00430600571;HOX{A5,B5}:-1.05478171311;NRF1:-1.07086374698;OCT4_SOX2{dimer}:-1.12757494104;POU1F1:-1.15587641152;TOPORS:-1.18779914762;RORA:-1.21661106843;CRX:-1.2252658293;PAX3,7:-1.28192574987;HOX{A4,D4}:-1.32871439646;LHX3,4:-1.33301132872;EVI1:-1.33800971695;PAX8:-1.33843878515;VSX1,2:-1.48645408534;PDX1:-1.50588398443;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.55720357568;FOXM1:-1.71314915635;HOXA9_MEIS1:-1.98206952981;YY1:-2.08911964113;ONECUT1,2:-2.13700354881;ELK1,4_GABP{A,B1}:-2.2691920441;PAX4:-2.40992928284
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.43874378994;SP1:2.38762220825;FOXA2:2.38316416028;FOX{D1,D2}:2.31703325094;EP300:2.27877076863;STAT2,4,6:2.24879169102;TLX2:2.21225730851;NFATC1..3:2.11689228227;TBP:2.04514480074;MAZ:2.0207806586;AR:2.01307183663;FOX{I1,J2}:1.98610572625;FOX{F1,F2,J1}:1.97267424197;T:1.82827012686;TFAP4:1.79765716879;FOXO1,3,4:1.75697702119;TFCP2:1.7284235757;TBX4,5:1.63554904515;RFX2..5_RFXANK_RFXAP:1.51713758655;TLX1..3_NFIC{dimer}:1.46970588395;ETS1,2:1.46825486643;HMX1:1.38253497082;SPZ1:1.36766488951;IRF1,2:1.35974074817;SRF:1.27534818581;NKX3-2:1.27323235278;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24649145633;XCPE1{core}:1.22109775601;PATZ1:1.20100577608;POU2F1..3:1.19433880349;MYFfamily:1.1582235875;SNAI1..3:1.15640546762;IRF7:1.13975721125;ZNF148:1.08359664563;PRDM1:1.07162845255;MZF1:1.06463147149;ZEB1:1.04097779129;MTF1:1.02265016654;SMAD1..7,9:1.00792633245;MTE{core}:0.986894119971;GTF2I:0.961668698282;TFAP2{A,C}:0.932143889456;MED-1{core}:0.919847418877;ZNF238:0.906427550187;JUN:0.899971644615;GATA6:0.850704704738;TGIF1:0.842139589594;EGR1..3:0.823247628252;HOX{A6,A7,B6,B7}:0.780314217396;ATF2:0.776696551816;HSF1,2:0.771138567424;SPIB:0.763598864479;GZF1:0.757459590434;ZNF423:0.738153429706;RBPJ:0.723765892217;HAND1,2:0.719535464464;MEF2{A,B,C,D}:0.71773329311;FOXN1:0.708137842658;SOX5:0.689134467156;HNF1A:0.688482065336;STAT1,3:0.67477818232;IKZF2:0.672613468592;HIC1:0.653118106932;TEAD1:0.647771437963;NANOG:0.629946001014;PAX1,9:0.616805991026;ATF6:0.59955696063;TFAP2B:0.593186752543;GTF2A1,2:0.589862704013;RFX1:0.574974139082;PAX6:0.571625225393;SPI1:0.568814981565;RUNX1..3:0.567552008739;NR3C1:0.559911575509;IKZF1:0.549752310328;SREBF1,2:0.520288494774;NR1H4:0.501845107924;GATA4:0.473467660996;FOXL1:0.462218882665;ZFP161:0.431950695237;GCM1,2:0.415429095315;XBP1:0.413900927555;MYBL2:0.405174165542;MYOD1:0.399568827937;EBF1:0.372418253717;HNF4A_NR2F1,2:0.371126609682;DMAP1_NCOR{1,2}_SMARC:0.369167534939;POU5F1:0.366205129376;HES1:0.363597986083;NR6A1:0.354100925493;ELF1,2,4:0.342659202327;HLF:0.334437825586;MAFB:0.247579442785;CEBPA,B_DDIT3:0.245099451361;RREB1:0.221385547296;BPTF:0.216337686371;FOXP3:0.199414728128;GFI1B:0.191509810062;ATF4:0.175856258316;ESR1:0.15499237449;PAX5:0.148186124626;GLI1..3:0.141824820239;FOXQ1:0.136141798868;NKX2-3_NKX2-5:0.129001040138;LMO2:0.114420119464;REST:0.101250784899;ZIC1..3:0.0837786102212;NFKB1_REL_RELA:0.0804142701143;HMGA1,2:0.0471235257147;NFIL3:0.0470803539826;NKX2-1,4:0.0460959777539;DBP:0.0455169496791;SOX2:0.00440236141573;NHLH1,2:-0.00248084504343;BREu{core}:-0.0175312346638;RXR{A,B,G}:-0.0274703358593;ALX4:-0.0322763819488;CDC5L:-0.0652553255988;FOSL2:-0.0731625307167;NFIX:-0.0779530921116;CREB1:-0.0873429135743;CDX1,2,4:-0.118876464644;SOX{8,9,10}:-0.129697031739;STAT5{A,B}:-0.13448782582;ATF5_CREB3:-0.186522327526;KLF4:-0.198747957544;NFE2:-0.213148310706;FOXD3:-0.224447402728;NFY{A,B,C}:-0.280595983547;PBX1:-0.283810734075;bHLH_family:-0.347182813973;POU3F1..4:-0.362479127144;ESRRA:-0.398373551325;ALX1:-0.416328320862;HIF1A:-0.418648300055;NFE2L2:-0.419191817341;FOS_FOS{B,L1}_JUN{B,D}:-0.426520659857;TAL1_TCF{3,4,12}:-0.437848627563;NR5A1,2:-0.444059718529;NANOG{mouse}:-0.449919702959;PAX2:-0.458425102138;BACH2:-0.477106762031;LEF1_TCF7_TCF7L1,2:-0.481416987099;ADNP_IRX_SIX_ZHX:-0.487466160354;UFEwm:-0.491210133331;RXRA_VDR{dimer}:-0.546145191377;TP53:-0.548110154229;AHR_ARNT_ARNT2:-0.584866677513;NKX2-2,8:-0.590350072144;SOX17:-0.600671320403;AIRE:-0.600994080903;PITX1..3:-0.615870112233;GFI1:-0.620427276295;FOXP1:-0.634023852334;TFDP1:-0.646496636144;NFE2L1:-0.665504688756;ARID5B:-0.709443636567;NKX6-1,2:-0.766570163731;MYB:-0.769550236791;CUX2:-0.77592750073;PPARG:-0.786056263247;ZBTB6:-0.793138072558;NKX3-1:-0.807029828949;TEF:-0.816321494693;PRRX1,2:-0.846424686661;EN1,2:-0.864736890572;ZNF143:-0.90920068023;POU6F1:-0.983461422633;E2F1..5:-0.991474866741;ZNF384:-0.999897144133;ZBTB16:-1.00430600571;HOX{A5,B5}:-1.05478171311;NRF1:-1.07086374698;OCT4_SOX2{dimer}:-1.12757494104;POU1F1:-1.15587641152;TOPORS:-1.18779914762;RORA:-1.21661106843;CRX:-1.2252658293;PAX3,7:-1.28192574987;HOX{A4,D4}:-1.32871439646;LHX3,4:-1.33301132872;EVI1:-1.33800971695;PAX8:-1.33843878515;VSX1,2:-1.48645408534;PDX1:-1.50588398443;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.55720357568;FOXM1:-1.71314915635;HOXA9_MEIS1:-1.98206952981;YY1:-2.08911964113;ONECUT1,2:-2.13700354881;ELK1,4_GABP{A,B1}:-2.2691920441;PAX4:-2.40992928284
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10019-101D1;search_select_hide=table117:FF:10019-101D1
}}
}}

Latest revision as of 12:14, 3 June 2020

Name:lung, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10625
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stage46,65,94 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number0910061 -10
catalog numberCat:AM6000 Lot:0910061 -10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005303
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10625 CAGE DRX008678 DRR009550
Accession ID Hg19

Library idBAMCTSS
CNhs10625 DRZ000975 DRZ002360
Accession ID Hg38

Library idBAMCTSS
CNhs10625 DRZ012325 DRZ013710
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10020downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0441
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.199
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.552
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0441
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0441
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0.378
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.0441
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.525
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.186
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.165
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0441
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0441
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.204
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.235
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0841
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0438
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.525
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0841
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0441
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.687
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.902
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0297
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.397
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0841
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0841
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0441
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0441
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.462
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.432
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0841
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.215
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.121
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0441
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0441
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0441
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.121
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.441
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0441
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.121
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0841
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.268
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0441
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0441
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.466
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0441
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.154
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.0441
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.154
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0441
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0441
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0841
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.279
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0441
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0441
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.215
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0841
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0921
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.316
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0441
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0.731
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.121
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10625

Jaspar motifP-value
MA0002.20.647
MA0003.10.123
MA0004.10.121
MA0006.10.119
MA0007.10.253
MA0009.10.115
MA0014.10.988
MA0017.10.799
MA0018.20.87
MA0019.10.0234
MA0024.10.0494
MA0025.10.0874
MA0027.10.629
MA0028.11.65541e-8
MA0029.10.247
MA0030.12.55577e-6
MA0031.11.67065e-4
MA0035.20.797
MA0038.10.929
MA0039.20.0575
MA0040.10.31
MA0041.10.0854
MA0042.10.124
MA0043.10.619
MA0046.10.00112
MA0047.21.73008e-7
MA0048.10.00892
MA0050.18.53737e-7
MA0051.16.92266e-4
MA0052.14.67961e-4
MA0055.19.80005e-4
MA0057.10.817
MA0058.10.0798
MA0059.10.0119
MA0060.10.169
MA0061.10.356
MA0062.21.83256e-8
MA0065.20.226
MA0066.10.149
MA0067.10.719
MA0068.12.8024e-4
MA0069.10.681
MA0070.10.293
MA0071.10.0548
MA0072.10.194
MA0073.10.958
MA0074.10.936
MA0076.16.54783e-10
MA0077.10.899
MA0078.10.168
MA0079.20.0645
MA0080.26.61508e-7
MA0081.10.28
MA0083.10.00395
MA0084.10.771
MA0087.10.138
MA0088.18.23498e-4
MA0090.10.0743
MA0091.10.838
MA0092.10.954
MA0093.10.105
MA0099.21.65037e-6
MA0100.10.812
MA0101.10.871
MA0102.20.00168
MA0103.10.268
MA0104.20.00118
MA0105.10.00825
MA0106.10.0375
MA0107.10.973
MA0108.21.08349e-16
MA0111.10.616
MA0112.20.813
MA0113.10.186
MA0114.10.149
MA0115.10.565
MA0116.10.0395
MA0117.10.304
MA0119.10.67
MA0122.10.0993
MA0124.10.84
MA0125.10.904
MA0131.10.117
MA0135.10.692
MA0136.19.76517e-4
MA0137.21.38105e-4
MA0138.20.54
MA0139.10.541
MA0140.10.983
MA0141.10.0542
MA0142.10.359
MA0143.10.437
MA0144.10.0026
MA0145.10.0225
MA0146.10.532
MA0147.11.85274e-4
MA0148.18.25543e-6
MA0149.10.115
MA0150.10.0783
MA0152.10.959
MA0153.15.57892e-7
MA0154.10.986
MA0155.10.526
MA0156.10.202
MA0157.10.0164
MA0159.10.803
MA0160.10.385
MA0162.10.929
MA0163.15.86178e-6
MA0164.10.0827
MA0258.10.232
MA0259.10.0102



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10625

Novel motifP-value
10.0917
100.0122
1000.189
1010.658
1020.838
1030.449
1040.975
1050.417
1060.16
1070.0393
1080.92
1090.239
110.236
1100.313
1110.0858
1120.711
1130.834
1140.0381
1150.248
1160.158
1170.0293
1180.0386
1190.208
120.611
1200.0339
1210.471
1220.655
1230.0135
1240.816
1250.165
1260.192
1270.935
1280.33
1290.0187
130.338
1300.424
1310.0548
1320.456
1330.0548
1340.237
1350.0286
1360.776
1370.256
1380.998
1390.336
140.727
1400.0552
1410.23
1420.373
1430.413
1440.589
1450.553
1460.243
1470.808
1480.444
1490.332
150.421
1500.863
1510.873
1520.0344
1530.642
1540.479
1550.385
1560.994
1570.591
1580.527
1590.852
160.951
1600.941
1610.348
1620.983
1630.701
1640.0169
1650.0131
1660.587
1670.00482
1680.15
1690.693
170.958
180.0805
190.37
20.0707
200.127
210.454
220.593
230.0823
240.618
250.466
260.393
270.635
280.889
290.0289
30.276
300.0237
310.999
320.68
330.517
340.168
350.203
360.0759
370.441
380.941
390.11
40.0958
400.452
410.518
420.366
430.685
440.861
450.0971
460.306
470.176
480.245
490.211
50.838
500.569
510.812
520.0428
530.697
540.908
550.47
560.99
570.0347
580.798
590.343
60.483
600.19
610.694
620.587
630.997
640.287
650.745
660.0449
670.753
680.567
690.852
70.861
700.0642
710.109
720.282
730.974
740.761
750.00565
760.0402
770.177
780.294
790.891
80.47
800.0178
810.541
820.689
830.284
840.862
850.343
860.639
870.741
880.944
890.734
90.165
900.0534
910.738
920.705
930.0492
940.192
950.286
960.755
970.593
980.155
990.855



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10625


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002048 (lung)
0002100 (trunk)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000117 (respiratory tube)
0000171 (respiration organ)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010019 (human lung - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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