FFCP PHASE1:Mm9::chr5:137592047..137592089,-: Difference between revisions
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{{FFCP|EntrezGene=384309|HGNC=|MCL_coexpression_id=542|UniProt=Q80VI1,D3YVX5|association_with_transcript=0bp_to_ENSMUST00000054384,ENSMUST00000152207,ENSMUST00000165237,NM_201373,uc009abp.1,uc009abq.1_5end|description=CAGE_peak_1_at_Trim56_5end|id=chr5:137592047..137592089,-|ontology_enrichment_celltype=CL:0000063!7.44e-13!66;CL:0002031!1.40e-10!25;CL:0002320!2.01e-08!46;CL:0000134!2.01e-08!46;CL:0000988!4.45e-08!32;CL:0002032!4.45e-08!32;CL:0000037!4.45e-08!32;CL:0000566!4.45e-08!32;CL:0000837!4.45e-08!32;CL:0000219!5.14e-07!54|ontology_enrichment_celltype_v019_2=CL:0002031,1.39e-10,25;CL:0002320,2.07e-08,46;CL:0000134,2.07e-08,46;CL:0000988,4.61e-08,32;CL:0002032,4.61e-08,32;CL:0000037,4.61e-08,32;CL:0000837,4.61e-08,32;CL:0000219,5.27e-07,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002405!5.80e-19!70;UBERON:0001007!3.69e-18!128;UBERON:0001555!3.69e-18!128;UBERON:0007026!3.69e-18!128;UBERON:0004119!4.01e-18!130;UBERON:0000925!4.01e-18!130;UBERON:0006595!4.01e-18!130;UBERON:0004921!1.69e-17!126;UBERON:0004185!1.69e-17!126;UBERON:0002193!1.60e-16!48;UBERON:0002390!2.14e-15!45;UBERON:0003061!2.14e-15!45;UBERON:0000490!1.18e-14!66;UBERON:0005911!2.78e-14!69;UBERON:0003929!6.33e-13!55;UBERON:0005057!7.55e-13!51;UBERON:0004177!6.98e-11!29;UBERON:0003104!8.40e-11!131;UBERON:0009142!8.40e-11!131;UBERON:0000077!1.17e-10!97;UBERON:0001041!1.99e-10!92;UBERON:0000065!1.42e-09!41;UBERON:0001004!2.24e-09!42;UBERON:0003081!6.51e-09!88;UBERON:0000072!1.02e-08!27;UBERON:0002370!1.19e-08!23;UBERON:0000974!1.19e-08!23;UBERON:0004807!1.19e-08!23;UBERON:0005058!1.19e-08!23;UBERON:0003351!1.19e-08!23;UBERON:0009113!1.19e-08!23;UBERON:0003295!1.19e-08!23;UBERON:0009722!1.19e-08!23;UBERON:0005562!1.19e-08!23;UBERON:0007690!1.19e-08!23;UBERON:0002384!2.01e-08!46;UBERON:0003408!2.45e-08!24;UBERON:0006562!3.39e-08!24;UBERON:0001557!3.39e-08!24;UBERON:0001042!3.39e-08!24;UBERON:0008814!3.39e-08!24;UBERON:0009145!3.39e-08!24;UBERON:0000926!1.39e-07!193;UBERON:0004120!1.39e-07!193;UBERON:0006603!1.39e-07!193;UBERON:0002530!1.89e-07!65;UBERON:0004923!2.08e-07!24;UBERON:0002368!2.43e-07!60|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.83e-19,116;UBERON:0001555,1.83e-19,116;UBERON:0007026,1.83e-19,116;UBERON:0004119,2.18e-19,118;UBERON:0000925,2.18e-19,118;UBERON:0006595,2.18e-19,118;UBERON:0004921,8.56e-19,114;UBERON:0002193,1.59e-16,48;UBERON:0002405,1.59e-16,48;UBERON:0002390,2.13e-15,45;UBERON:0003061,2.13e-15,45;UBERON:0000490,1.17e-14,66;UBERON:0005911,2.77e-14,69;UBERON:0003929,6.30e-13,55;UBERON:0001041,1.05e-11,80;UBERON:0000077,4.84e-11,35;UBERON:0004177,6.96e-11,29;UBERON:0005057,6.96e-11,29;UBERON:0000065,1.41e-09,41;UBERON:0001004,2.24e-09,42;UBERON:0000072,1.01e-08,27;UBERON:0002370,1.19e-08,23;UBERON:0000974,1.19e-08,23;UBERON:0004807,1.19e-08,23;UBERON:0005058,1.19e-08,23;UBERON:0003351,1.19e-08,23;UBERON:0009113,1.19e-08,23;UBERON:0003295,1.19e-08,23;UBERON:0009722,1.19e-08,23;UBERON:0005562,1.19e-08,23;UBERON:0007690,1.19e-08,23;UBERON:0003081,1.65e-08,87;UBERON:0002384,2.07e-08,46;UBERON:0003408,2.45e-08,24;UBERON:0006562,3.39e-08,24;UBERON:0001557,3.39e-08,24;UBERON:0001042,3.39e-08,24;UBERON:0008814,3.39e-08,24;UBERON:0009145,3.39e-08,24;UBERON:0002530,1.89e-07,65;UBERON:0004923,2.08e-07,24;UBERON:0002368,2.42e-07,60|phase1_expression=3.52327463630547,35.5954915792148,27.2999543633722,47.1844169638655,38.5689712058687,11.9194283057442,17.7545606852599,51.6493293766305,11.9670413828917,10.5329036844897,20.5461561870606,24.1709641755869,64.2002737242021,55.6867963409013,27.9812199925157,38.6727760714568,32.8794082720229,42.7451234060412,48.6756239300373,44.1365237869951,13.6069264241712,14.4964788753293,12.7987896678078,18.2391361984484,15.1410125504332,24.6919744569459,19.3842898271584,17.6686410802429,19.0023419456374,17.8941392129551,16.6297882991479,10.7955214488137,7.99584223859941,47.5445043046316,7.79899373328441,9.14290549471708,14.4960242946282,30.5528090437943,21.0960543021426,24.6056159667685,38.2350467220159,43.7149110373405,30.1016418879315,16.6183799727762,17.335455238537,8.07605709511399,9.38869613217647,3.92445281484804,3.95435128922049,8.1660557611199,5.73944328663986,2.87505128729943,31.8786951509699,45.6978149467147,56.463758255934,17.4936416504444,15.7593391966316,31.455997628924,0,1.5869729378161,0.633831403506179,3.38844532069132,5.33576877666684,13.9484456178617,28.6771245144423,16.3410426437603,8.08920298399693,8.83702102239575,1.03689612308478,1.89008313664367,0.420649922702764,2.85650984403804,4.19650227808066,0.857435594504678,0.958454710182364,0,6.60695285996332,4.21368215681119,4.76180253094355,0.527545150920775,0.274462930807229,0,3.07101298901519,1.12552522006336,3.51435969886663,2.35702868378934,2.27794689278565,1.1183966749518,10.298762293313,10.5044468548432,43.7695377939533,13.7667820317022,4.75979933595425,18.3499085156858,18.8435161059824,16.1289679355041,14.6062196937022,6.81721290312231,6.49465011507172,6.360112341186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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=384309 | |||
|HGNC= | |||
|MCL_coexpression_id=542 | |||
|TSSclassifier=NA | |||
|UniProt=Q80VI1,D3YVX5 | |||
|association_with_transcript=0bp_to_ENSMUST00000054384,ENSMUST00000152207,ENSMUST00000165237,NM_201373,uc009abp.1,uc009abq.1_5end | |||
|cluster_id=chr5:137592047..137592089,- | |||
|description=CAGE_peak_1_at_Trim56_5end | |||
|id=chr5:137592047..137592089,- | |||
|ontology_enrichment_celltype=CL:0000063!7.44e-13!66;CL:0002031!1.40e-10!25;CL:0002320!2.01e-08!46;CL:0000134!2.01e-08!46;CL:0000988!4.45e-08!32;CL:0002032!4.45e-08!32;CL:0000037!4.45e-08!32;CL:0000566!4.45e-08!32;CL:0000837!4.45e-08!32;CL:0000219!5.14e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.39e-10,25;CL:0002320,2.07e-08,46;CL:0000134,2.07e-08,46;CL:0000988,4.61e-08,32;CL:0002032,4.61e-08,32;CL:0000037,4.61e-08,32;CL:0000837,4.61e-08,32;CL:0000219,5.27e-07,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!5.80e-19!70;UBERON:0001007!3.69e-18!128;UBERON:0001555!3.69e-18!128;UBERON:0007026!3.69e-18!128;UBERON:0004119!4.01e-18!130;UBERON:0000925!4.01e-18!130;UBERON:0006595!4.01e-18!130;UBERON:0004921!1.69e-17!126;UBERON:0004185!1.69e-17!126;UBERON:0002193!1.60e-16!48;UBERON:0002390!2.14e-15!45;UBERON:0003061!2.14e-15!45;UBERON:0000490!1.18e-14!66;UBERON:0005911!2.78e-14!69;UBERON:0003929!6.33e-13!55;UBERON:0005057!7.55e-13!51;UBERON:0004177!6.98e-11!29;UBERON:0003104!8.40e-11!131;UBERON:0009142!8.40e-11!131;UBERON:0000077!1.17e-10!97;UBERON:0001041!1.99e-10!92;UBERON:0000065!1.42e-09!41;UBERON:0001004!2.24e-09!42;UBERON:0003081!6.51e-09!88;UBERON:0000072!1.02e-08!27;UBERON:0002370!1.19e-08!23;UBERON:0000974!1.19e-08!23;UBERON:0004807!1.19e-08!23;UBERON:0005058!1.19e-08!23;UBERON:0003351!1.19e-08!23;UBERON:0009113!1.19e-08!23;UBERON:0003295!1.19e-08!23;UBERON:0009722!1.19e-08!23;UBERON:0005562!1.19e-08!23;UBERON:0007690!1.19e-08!23;UBERON:0002384!2.01e-08!46;UBERON:0003408!2.45e-08!24;UBERON:0006562!3.39e-08!24;UBERON:0001557!3.39e-08!24;UBERON:0001042!3.39e-08!24;UBERON:0008814!3.39e-08!24;UBERON:0009145!3.39e-08!24;UBERON:0000926!1.39e-07!193;UBERON:0004120!1.39e-07!193;UBERON:0006603!1.39e-07!193;UBERON:0002530!1.89e-07!65;UBERON:0004923!2.08e-07!24;UBERON:0002368!2.43e-07!60 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.83e-19,116;UBERON:0001555,1.83e-19,116;UBERON:0007026,1.83e-19,116;UBERON:0004119,2.18e-19,118;UBERON:0000925,2.18e-19,118;UBERON:0006595,2.18e-19,118;UBERON:0004921,8.56e-19,114;UBERON:0002193,1.59e-16,48;UBERON:0002405,1.59e-16,48;UBERON:0002390,2.13e-15,45;UBERON:0003061,2.13e-15,45;UBERON:0000490,1.17e-14,66;UBERON:0005911,2.77e-14,69;UBERON:0003929,6.30e-13,55;UBERON:0001041,1.05e-11,80;UBERON:0000077,4.84e-11,35;UBERON:0004177,6.96e-11,29;UBERON:0005057,6.96e-11,29;UBERON:0000065,1.41e-09,41;UBERON:0001004,2.24e-09,42;UBERON:0000072,1.01e-08,27;UBERON:0002370,1.19e-08,23;UBERON:0000974,1.19e-08,23;UBERON:0004807,1.19e-08,23;UBERON:0005058,1.19e-08,23;UBERON:0003351,1.19e-08,23;UBERON:0009113,1.19e-08,23;UBERON:0003295,1.19e-08,23;UBERON:0009722,1.19e-08,23;UBERON:0005562,1.19e-08,23;UBERON:0007690,1.19e-08,23;UBERON:0003081,1.65e-08,87;UBERON:0002384,2.07e-08,46;UBERON:0003408,2.45e-08,24;UBERON:0006562,3.39e-08,24;UBERON:0001557,3.39e-08,24;UBERON:0001042,3.39e-08,24;UBERON:0008814,3.39e-08,24;UBERON:0009145,3.39e-08,24;UBERON:0002530,1.89e-07,65;UBERON:0004923,2.08e-07,24;UBERON:0002368,2.42e-07,60 | |||
|phase1_expression=3.52327463630547,35.5954915792148,27.2999543633722,47.1844169638655,38.5689712058687,11.9194283057442,17.7545606852599,51.6493293766305,11.9670413828917,10.5329036844897,20.5461561870606,24.1709641755869,64.2002737242021,55.6867963409013,27.9812199925157,38.6727760714568,32.8794082720229,42.7451234060412,48.6756239300373,44.1365237869951,13.6069264241712,14.4964788753293,12.7987896678078,18.2391361984484,15.1410125504332,24.6919744569459,19.3842898271584,17.6686410802429,19.0023419456374,17.8941392129551,16.6297882991479,10.7955214488137,7.99584223859941,47.5445043046316,7.79899373328441,9.14290549471708,14.4960242946282,30.5528090437943,21.0960543021426,24.6056159667685,38.2350467220159,43.7149110373405,30.1016418879315,16.6183799727762,17.335455238537,8.07605709511399,9.38869613217647,3.92445281484804,3.95435128922049,8.1660557611199,5.73944328663986,2.87505128729943,31.8786951509699,45.6978149467147,56.463758255934,17.4936416504444,15.7593391966316,31.455997628924,0,1.5869729378161,0.633831403506179,3.38844532069132,5.33576877666684,13.9484456178617,28.6771245144423,16.3410426437603,8.08920298399693,8.83702102239575,1.03689612308478,1.89008313664367,0.420649922702764,2.85650984403804,4.19650227808066,0.857435594504678,0.958454710182364,0,6.60695285996332,4.21368215681119,4.76180253094355,0.527545150920775,0.274462930807229,0,3.07101298901519,1.12552522006336,3.51435969886663,2.35702868378934,2.27794689278565,1.1183966749518,10.298762293313,10.5044468548432,43.7695377939533,13.7667820317022,4.75979933595425,18.3499085156858,18.8435161059824,16.1289679355041,14.6062196937022,6.81721290312231,6.49465011507172,6.36011234118612,3.66192891419369,25.6652954828636,35.6727335589304,21.3320010945999,15.5873549528074,12.1612735428047,17.1878311305026,20.3247305899927,33.9208627577795,12.3206975423805,2.60227990149204,4.26251669636998,3.92046345335299,9.94769427647309,8.11362079236363,10.8073268543521,17.5508427091405,14.0261376212314,26.5383165584962,5.3383060482645,8.83366073841574,11.6370060752453,13.0474232852686,2.04946557908083,1.04723353406728,27.3339049073193,10.0644704584973,5.99902730993408,7.75128385145695,1.49790639404823,4.57500602818627,0.879580464790051,1.04294592115366,0.767146371990992,3.74018480207208,2.10913641988085,6.41587992256993,15.0532434438213,5.81262344397452,9.6803253707778,1.04096354370163,0.689706313300419,1.62055916824814,3.31550599238573,3.40182495756639,1.7935920839879,1.68663104207512,4.65666067330228,1.94011193639558,1.89106080167819,1.23165786914764,2.84954452155847,4.44875598760957,3.48252166522167,3.90986059175093,4.17971960318836,9.12877143507205,4.88961023517959,8.24074148247219,2.07125772535502,1.87620847984877,1.62055855314913,3.55117103377815,2.95146347621106,3.85667782218446,3.48800917125612,5.36546802799238,4.55384835231961,2.96207729844265,7.22336841948019,8.75543143095242,12.5731989185786,10.9775057645525,11.0049263383505,2.3131894342054,0.92614151141356,26.4335026387038,25.1228038330367,0.853153002140936,3.0190767341857,4.38149368495117,6.25218926332362,8.89512175379481,11.7939888189787,19.455691523325,11.1995289212327,14.8287773192159,19.6966907320739,17.5467678407208,23.3693046250098,22.9106332867176,18.9184209591649,1.89667900953082,3.77020091612105,0,4.2766778847516,7.17624202520215,4.97964321221262,7.46191138066236,14.0229640580622,10.2049173096894,8.26760998276064,14.2297261001831,6.34011401721157,6.4864468387357,8.99448449539415,10.9544465549792,8.92355491083942,15.786802810448,18.4125527968519,17.9970101720289,6.31491250332587,14.3768206527355,19.7234702264307,17.1620720213008,15.6598904327209,10.0462551572271,11.0962009913574,36.2116252726545,2.27389694124582,3.42226450528254,6.28056817368196,6.57132695207806,12.0604505358107,18.8054476299951,14.2447562936193,14.6600684018758,15.0595988961167,12.118562417969,26.3819936692338,24.6939524068231,27.3386720719057,52.7769493787453,47.8637001760464,11.3105782794378,10.7615331058846,2.24770825982909,1.75817529888305,6.06559297893699,5.80683132570058,7.57219726599016,5.85658116444958,6.89354872744957,6.69112634267146,8.46634961513098,7.35998980050964,6.8817819284732,7.89090816360542,6.7198922250909,2.89189184779626,9.509985708954,4.09550888434687,5.21238269931443,13.6925202067204,10.619611067197,3.64170954232472,3.32555912661226,5.28094223316515,4.72483028609236,5.53383266299069,11.62927319257,7.63420831902762,8.19943970284859,10.4292130118819,11.5960469432499,8.25084345985495,22.8094535855038,1.98067203434441,1.81102157295856,3.00071849044229,5.14286677562593,6.24290861607247,6.91105886528908,9.13394847343798,8.44818149029357,7.20229040936989,6.83638033970382,10.5527201882547,5.48979050766079,3.67908842061751,5.252383136138,2.62625439592098,24.7758711135373,2.22510362412612,33.1489508747834,8.46186158649212,21.852954229626,26.183215523652,31.8497550589989,30.8850533828806,15.1280802694531,14.2750481370131,17.274996725553,5.72802370809068,1.10717597753397,2.84647253977588,4.42821897369385,3.972677624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| |||
|short_description=p1@Trim56 | |||
}} |
Latest revision as of 14:26, 25 September 2015
Short description: | p1@Trim56 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trim56_5end |
Coexpression cluster: | MCL_coexpression_mm9:542 |
Association with transcript: | 0bp_to_ENSMUST00000054384, ENSMUST00000152207, ENSMUST00000165237, NM_201373, uc009abp.1, uc009abq.1_5end |
EntrezGene: | Trim56 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.39e-10 | 25 |
connective tissue cell | 2.07e-08 | 46 |
mesenchymal cell | 2.07e-08 | 46 |
hematopoietic cell | 4.61e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.61e-08 | 32 |
hematopoietic stem cell | 4.61e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.61e-08 | 32 |
motile cell | 5.27e-07 | 54 |