FFCP PHASE1:Hg19::chr17:45331014..45331054,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:45331014..45331054,+
|short_description=p3@ITGB3
|description=CAGE_peak_3_at_ITGB3_5end
|association_with_transcript=-153bp_to_ENST00000262017,NM_000212,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3690 | |EntrezGene=3690 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6156 | |HGNC=6156 | ||
|TSSclassifier=strong | |||
|UniProt=P05106,Q2YFE1 | |UniProt=P05106,Q2YFE1 | ||
|association_with_transcript=-153bp_to_ENST00000262017,NM_000212,uc002ili.1,uc002ilj.2,uc010wkr.1_5end | |||
|cluster_id=chr17:45331014..45331054,+ | |||
|description=CAGE_peak_3_at_ITGB3_5end | |||
|id=chr17:45331014..45331054,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.71e-11!119;CL:1000449!2.44e-10!16;CL:1000497!9.17e-10!18;CL:0002518!9.17e-10!18;CL:1000507!2.70e-09!12;CL:1000494!2.70e-09!12;CL:0002078!7.04e-09!44;CL:0002681!8.11e-08!13;CL:0002584!8.11e-08!13;CL:0000055!8.66e-08!180;CL:0000183!1.56e-07!59;CL:0002139!2.68e-07!24;CL:0000115!4.15e-07!35;CL:0000071!5.18e-07!18;CL:0002546!5.18e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.15e-30;10!CL:1000494;2.15e-30;10!CL:1000449;5.09e-28;15!CL:1000497;2.27e-24;17!CL:0002518;2.27e-24;17!CL:0002681;1.37e-19;12!CL:0002584;1.37e-19;12!CL:0000306;1.00e-11;4!CL:0002222;1.00e-11;4!CL:0002224;1.00e-11;4!CL:0000239;1.41e-09;3!CL:1000615;1.41e-09;3!CL:0002306;1.41e-09;3!CL:0000075;9.37e-09;27!CL:1000413;5.92e-08;9!CL:0000650;1.95e-07;2!CL:1000500;1.95e-07;2!CL:1000618;1.95e-07;2!CL:1001318;1.95e-07;2!CL:0002173;1.95e-07;2!CL:1000746;2.58e-07;7!CL:1000612;2.58e-07;7!CL:0000071;5.44e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,8.02e-31,10;CL:1000494,8.02e-31,10;CL:1000449,1.97e-28,15;CL:1000497,9.90e-25,17;CL:0002518,9.90e-25,17;CL:0002681,5.39e-20,12;CL:0002584,5.39e-20,12;CL:0000306,1.57e-11,4;CL:0002222,1.57e-11,4;CL:0002224,1.57e-11,4;CL:0000239,4.70e-10,3;CL:1000615,4.70e-10,3;CL:0002306,4.70e-10,3;CL:0000075,7.28e-09,27;CL:0000222,9.66e-09,121;CL:0002078,2.63e-08,45;CL:1000413,5.45e-08,9;CL:0000650,2.23e-07,2;CL:1000500,2.23e-07,2;CL:1000618,2.23e-07,2;CL:1001318,2.23e-07,2;CL:0002173,2.23e-07,2;CL:1000746,2.46e-07,7;CL:1000612,2.46e-07,7;CL:0000071,4.13e-07,18;CL:0002546,4.13e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;5.44e-07;18 | |||
|ontology_enrichment_disease=DOID:2394!1.65e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!3.75e-18!113;UBERON:0004535!5.15e-18!110;UBERON:0003914!1.87e-17!118;UBERON:0002049!7.34e-15!79;UBERON:0007798!7.34e-15!79;UBERON:0004872!2.63e-14!84;UBERON:0000055!3.16e-14!69;UBERON:0001981!4.76e-13!60;UBERON:0007500!4.76e-13!60;UBERON:0004537!4.76e-13!60;UBERON:0006965!4.76e-13!60;UBERON:0000119!1.99e-10!312;UBERON:0004211!2.44e-10!16;UBERON:0001285!2.44e-10!16;UBERON:0007684!2.44e-10!16;UBERON:0003220!2.44e-10!16;UBERON:0004208!2.44e-10!16;UBERON:0000483!4.32e-10!309;UBERON:0000353!8.69e-10!17;UBERON:0000490!1.83e-09!138;UBERON:0003887!1.87e-09!21;UBERON:0006555!2.29e-09!17;UBERON:0005103!2.29e-09!17;UBERON:0000083!2.29e-09!17;UBERON:0009201!2.29e-09!17;UBERON:0004819!2.29e-09!17;UBERON:0006553!2.29e-09!17;UBERON:0003074!2.29e-09!17;UBERON:0003060!2.29e-09!17;UBERON:0009773!2.70e-09!12;UBERON:0001231!2.70e-09!12;UBERON:0004810!2.70e-09!12;UBERON:0000025!1.25e-08!194;UBERON:0005256!1.46e-08!143;UBERON:0000080!1.64e-08!18;UBERON:0002120!1.64e-08!18;UBERON:0004875!1.64e-08!18;UBERON:0005721!1.64e-08!18;UBERON:0005754!1.64e-08!18;UBERON:0007297!1.64e-08!18;UBERON:0004876!2.31e-08!20;UBERON:0001637!3.07e-08!42;UBERON:0003509!3.07e-08!42;UBERON:0004572!3.07e-08!42;UBERON:0001225!8.11e-08!13;UBERON:0008987!8.11e-08!13;UBERON:0004111!1.47e-07!241;UBERON:0000477!1.59e-07!286;UBERON:0001986!5.18e-07!18;UBERON:0004638!5.18e-07!18;UBERON:0004852!5.18e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.15e-30;10!UBERON:0009773;2.15e-30;10!UBERON:0001231;2.15e-30;10!UBERON:0004810;2.15e-30;10!UBERON:0006555;5.09e-28;15!UBERON:0004819;5.09e-28;15!UBERON:0001285;5.09e-28;15!UBERON:0007684;5.09e-28;15!UBERON:0001225;1.37e-19;12!UBERON:0008987;1.37e-19;12!UBERON:0000353;9.33e-19;15!UBERON:0002113;2.12e-16;24!UBERON:0011143;2.12e-16;24!UBERON:0001851;2.68e-15;15!UBERON:0003914;1.90e-13;74!UBERON:0000489;4.49e-13;29!UBERON:0006554;1.53e-12;30!UBERON:0001008;1.53e-12;30!UBERON:0010077;1.00e-11;4!UBERON:0005389;1.00e-11;4!UBERON:0000484;1.00e-11;4!UBERON:0000965;1.00e-11;4!UBERON:0001803;1.00e-11;4!UBERON:0006853;1.41e-09;3!UBERON:0007685;1.41e-09;3!UBERON:0004134;1.41e-09;3!UBERON:0000490;4.83e-09;33!UBERON:0007625;8.00e-09;11!UBERON:0005172;2.31e-08;52!UBERON:0005173;2.31e-08;52!UBERON:0003915;5.92e-08;9!UBERON:0004700;5.92e-08;9!UBERON:0001917;5.92e-08;9!UBERON:0003567;1.95e-07;2!UBERON:0003838;1.95e-07;2!UBERON:0003586;1.95e-07;2!UBERON:0005169;1.95e-07;2!UBERON:0002321;1.95e-07;2!UBERON:0005215;1.95e-07;2!UBERON:0002303;1.95e-07;2!UBERON:0002319;1.95e-07;2!UBERON:0000074;2.58e-07;7!UBERON:0001229;2.58e-07;7!UBERON:0000487;3.63e-07;22!UBERON:0004638;5.44e-07;18!UBERON:0001986;5.44e-07;18!UBERON:0004852;5.44e-07;18!UBERON:0000025;5.52e-07;93!UBERON:0001801;8.63e-07;14 | |||
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| ||
|short_description=p3@ITGB3 | |||
}} | }} |
Latest revision as of 03:39, 25 September 2015
Short description: | p3@ITGB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITGB3_5end |
Coexpression cluster: | NA |
Association with transcript: | -153bp_to_ENST00000262017, NM_000212, uc002ili.1, uc002ilj.2, uc010wkr.1_5end |
EntrezGene: | ITGB3 |
HGNC: | 6156 |
UniProt: | P05106Q2YFE1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 8.02e-31 | 10 |
nephron tubule epithelial cell | 8.02e-31 | 10 |
epithelial cell of nephron | 1.97e-28 | 15 |
kidney cell | 9.90e-25 | 17 |
kidney epithelial cell | 9.90e-25 | 17 |
kidney cortical cell | 5.39e-20 | 12 |
renal cortical epithelial cell | 5.39e-20 | 12 |
crystallin accumulating cell | 1.57e-11 | 4 |
vertebrate lens cell | 1.57e-11 | 4 |
lens epithelial cell | 1.57e-11 | 4 |
brush border epithelial cell | 4.70e-10 | 3 |
kidney cortex tubule cell | 4.70e-10 | 3 |
epithelial cell of proximal tubule | 4.70e-10 | 3 |
columnar/cuboidal epithelial cell | 7.28e-09 | 27 |
mesodermal cell | 9.66e-09 | 121 |
meso-epithelial cell | 2.63e-08 | 45 |
endothelial cell of artery | 5.45e-08 | 9 |
mesangial cell | 2.23e-07 | 2 |
kidney interstitial cell | 2.23e-07 | 2 |
juxtaglomerular complex cell | 2.23e-07 | 2 |
renal interstitial pericyte | 2.23e-07 | 2 |
extraglomerular mesangial cell | 2.23e-07 | 2 |
glomerular cell | 2.46e-07 | 7 |
kidney corpuscule cell | 2.46e-07 | 7 |
blood vessel endothelial cell | 4.13e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.13e-07 | 18 |