FFCP PHASE1:Hg19::chr11:65778976..65778988,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1474 | |EntrezGene=1474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2478 | |HGNC=2478 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=21bp_to_uc001ogq.1_5end | |association_with_transcript=21bp_to_uc001ogq.1_5end | ||
|cluster_id=chr11:65778976..65778988,+ | |||
|coexpression_cluster_id=C1349 | |||
|description=CAGE_peak_4_at_CST6_5end | |description=CAGE_peak_4_at_CST6_5end | ||
|id=chr11:65778976..65778988,+ | |id=chr11:65778976..65778988,+ | ||
|ontology_enrichment_celltype=CL:0000066!8.34e-15!254;CL:0002076!4.24e-14!43;CL:0000223!1.95e-10!59;CL:0002541!3.03e-10!3;CL:0002368!2.89e-09!13 | |ontology_enrichment_celltype=CL:0000066!8.34e-15!254;CL:0002076!4.24e-14!43;CL:0000223!1.95e-10!59;CL:0002541!3.03e-10!3;CL:0002368!2.89e-09!13 | ||
|ontology_enrichment_celltype_v019=CL:0002541;9.76e-28;3!CL:0000349;5.51e-22;19!CL:0002537;2.73e-16;5!CL:0000239;2.67e-12;3!CL:1000615;2.67e-12;3!CL:0002306;2.67e-12;3!CL:0002681;9.25e-12;12!CL:0002584;9.25e-12;12!CL:1000449;1.92e-09;15!CL:1000497;2.37e-08;17!CL:0002518;2.37e-08;17!CL:1000507;3.25e-08;10!CL:1000494;3.25e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.02e-27,3;CL:0000349,5.42e-22,19;CL:0002537,2.87e-16,5;CL:0000239,2.83e-12,3;CL:1000615,2.83e-12,3;CL:0002306,2.83e-12,3;CL:0002681,8.39e-12,12;CL:0002584,8.39e-12,12;CL:1000449,1.77e-09,15;CL:1000497,2.22e-08,17;CL:0002518,2.22e-08,17;CL:1000507,2.94e-08,10;CL:1000494,2.94e-08,10;CL:0000066,5.73e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.90e-13!106;DOID:0050687!1.35e-09!143;DOID:1749!4.17e-09!14;DOID:4468!4.17e-07!2 | |ontology_enrichment_disease=DOID:305!3.90e-13!106;DOID:0050687!1.35e-09!143;DOID:1749!4.17e-09!14;DOID:4468!4.17e-07!2 | ||
|ontology_enrichment_disease_v019=DOID:4468;2.22e-18;2!DOID:1749;4.53e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.90e-18,2;DOID:1749,3.83e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.61e-13!14;UBERON:0000158!9.61e-13!14;UBERON:0004119!3.39e-12!169;UBERON:0000925!3.39e-12!169;UBERON:0006595!3.39e-12!169;UBERON:0003124!7.93e-11!7;UBERON:0005911!1.53e-10!82;UBERON:0000476!3.03e-10!3;UBERON:0000920!3.03e-10!3;UBERON:0001004!7.78e-10!72;UBERON:0003064!9.84e-10!37;UBERON:0005153!1.76e-09!37;UBERON:0000065!3.55e-09!53;UBERON:0000058!3.87e-09!26;UBERON:0006554!5.69e-09!44;UBERON:0001008!1.06e-08!45;UBERON:0000466!5.21e-08!126;UBERON:0000464!5.67e-08!104;UBERON:0005178!2.26e-07!34;UBERON:0002224!2.26e-07!34;UBERON:0000344!2.53e-07!12;UBERON:0005157!2.99e-07!51;UBERON:0002394!3.18e-07!4;UBERON:0003928!3.18e-07!4;UBERON:0001007!3.98e-07!155;UBERON:0001555!3.98e-07!155;UBERON:0007026!3.98e-07!155;UBERON:0005181!4.25e-07!35;UBERON:0000161!7.32e-07!35;UBERON:0002294!7.42e-07!7;UBERON:0001173!7.42e-07!7;UBERON:0004912!7.42e-07!7;UBERON:0002048!7.62e-07!22;UBERON:0000117!7.62e-07!22;UBERON:0000171!7.62e-07!22;UBERON:0000170!7.62e-07!22;UBERON:0005597!7.62e-07!22;UBERON:0000118!7.62e-07!22;UBERON:0005177!8.36e-07!107;UBERON:0000478!8.73e-07!24 | |ontology_enrichment_uberon=UBERON:0005631!9.61e-13!14;UBERON:0000158!9.61e-13!14;UBERON:0004119!3.39e-12!169;UBERON:0000925!3.39e-12!169;UBERON:0006595!3.39e-12!169;UBERON:0003124!7.93e-11!7;UBERON:0005911!1.53e-10!82;UBERON:0000476!3.03e-10!3;UBERON:0000920!3.03e-10!3;UBERON:0001004!7.78e-10!72;UBERON:0003064!9.84e-10!37;UBERON:0005153!1.76e-09!37;UBERON:0000065!3.55e-09!53;UBERON:0000058!3.87e-09!26;UBERON:0006554!5.69e-09!44;UBERON:0001008!1.06e-08!45;UBERON:0000466!5.21e-08!126;UBERON:0000464!5.67e-08!104;UBERON:0005178!2.26e-07!34;UBERON:0002224!2.26e-07!34;UBERON:0000344!2.53e-07!12;UBERON:0005157!2.99e-07!51;UBERON:0002394!3.18e-07!4;UBERON:0003928!3.18e-07!4;UBERON:0001007!3.98e-07!155;UBERON:0001555!3.98e-07!155;UBERON:0007026!3.98e-07!155;UBERON:0005181!4.25e-07!35;UBERON:0000161!7.32e-07!35;UBERON:0002294!7.42e-07!7;UBERON:0001173!7.42e-07!7;UBERON:0004912!7.42e-07!7;UBERON:0002048!7.62e-07!22;UBERON:0000117!7.62e-07!22;UBERON:0000171!7.62e-07!22;UBERON:0000170!7.62e-07!22;UBERON:0005597!7.62e-07!22;UBERON:0000118!7.62e-07!22;UBERON:0005177!8.36e-07!107;UBERON:0000478!8.73e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.82e-31;10!UBERON:0000158;1.82e-31;10!UBERON:0003124;9.76e-28;3!UBERON:0000920;9.76e-28;3!UBERON:0000478;2.92e-17;24!UBERON:0006853;2.67e-12;3!UBERON:0007685;2.67e-12;3!UBERON:0004134;2.67e-12;3!UBERON:0000305;8.44e-12;7!UBERON:0001225;9.25e-12;12!UBERON:0008987;9.25e-12;12!UBERON:0004913;3.39e-10;1!UBERON:0003703;3.39e-10;1!UBERON:0001174;3.39e-10;1!UBERON:0004914;3.39e-10;1!UBERON:0002394;6.93e-10;4!UBERON:0003928;6.93e-10;4!UBERON:0001851;1.92e-09;15!UBERON:0006555;1.92e-09;15!UBERON:0000353;1.92e-09;15!UBERON:0004819;1.92e-09;15!UBERON:0001285;1.92e-09;15!UBERON:0007684;1.92e-09;15!UBERON:0004211;3.25e-08;10!UBERON:0009773;3.25e-08;10!UBERON:0001231;3.25e-08;10!UBERON:0004810;3.25e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.43e-30,14;UBERON:0000158,4.43e-30,14;UBERON:0000920,1.02e-27,3;UBERON:0003124,1.26e-20,7;UBERON:0000478,2.89e-17,24;UBERON:0006853,2.83e-12,3;UBERON:0007685,2.83e-12,3;UBERON:0004134,2.83e-12,3;UBERON:0001225,8.39e-12,12;UBERON:0008987,8.39e-12,12;UBERON:0000305,8.76e-12,7;UBERON:0004871,2.23e-10,8;UBERON:0004913,3.40e-10,1;UBERON:0003703,3.40e-10,1;UBERON:0001174,3.40e-10,1;UBERON:0004914,3.40e-10,1;UBERON:0001851,1.77e-09,15;UBERON:0004211,1.77e-09,15;UBERON:0009773,1.77e-09,15;UBERON:0000353,1.77e-09,15;UBERON:0001231,1.77e-09,15;UBERON:0001285,1.77e-09,15;UBERON:0007684,1.77e-09,15;UBERON:0004208,1.77e-09,15;UBERON:0006555,6.78e-09,16;UBERON:0004819,6.78e-09,16;UBERON:0004810,2.94e-08,10;UBERON:0004923,1.66e-07,66;UBERON:0002394,7.05e-07,6;UBERON:0003928,7.05e-07,6 | |||
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| ||
|short_description=p4@CST6 | |short_description=p4@CST6 | ||
}} | }} |
Latest revision as of 12:49, 19 September 2015
Short description: | p4@CST6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CST6_5end |
Coexpression cluster: | C1349_Alveolar_bile_chorionic_clear_amniotic_papillotubular_serous |
Association with transcript: | 21bp_to_uc001ogq.1_5end |
EntrezGene: | CST6 |
HGNC: | 2478 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.02e-27 | 3 |
extraembryonic cell | 5.42e-22 | 19 |
amnion mesenchymal stem cell | 2.87e-16 | 5 |
brush border epithelial cell | 2.83e-12 | 3 |
kidney cortex tubule cell | 2.83e-12 | 3 |
epithelial cell of proximal tubule | 2.83e-12 | 3 |
kidney cortical cell | 8.39e-12 | 12 |
renal cortical epithelial cell | 8.39e-12 | 12 |
epithelial cell of nephron | 1.77e-09 | 15 |
kidney cell | 2.22e-08 | 17 |
kidney epithelial cell | 2.22e-08 | 17 |
kidney tubule cell | 2.94e-08 | 10 |
nephron tubule epithelial cell | 2.94e-08 | 10 |
epithelial cell | 5.73e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.43e-30 | 14 |
membranous layer | 4.43e-30 | 14 |
egg chorion | 1.02e-27 | 3 |
chorion | 1.26e-20 | 7 |
extraembryonic structure | 2.89e-17 | 24 |
renal cortex tubule | 2.83e-12 | 3 |
region of nephron tubule | 2.83e-12 | 3 |
proximal tubule | 2.83e-12 | 3 |
cortex of kidney | 8.39e-12 | 12 |
renal parenchyma | 8.39e-12 | 12 |
amnion | 8.76e-12 | 7 |
somatic layer of lateral plate mesoderm | 2.23e-10 | 8 |
hepatopancreatic ampulla | 3.40e-10 | 1 |
extrahepatic bile duct | 3.40e-10 | 1 |
common bile duct | 3.40e-10 | 1 |
duodenal papilla | 3.40e-10 | 1 |
cortex | 1.77e-09 | 15 |
nephron epithelium | 1.77e-09 | 15 |
renal tubule | 1.77e-09 | 15 |
parenchyma | 1.77e-09 | 15 |
nephron tubule | 1.77e-09 | 15 |
nephron | 1.77e-09 | 15 |
uriniferous tubule | 1.77e-09 | 15 |
nephrogenic mesenchyme | 1.77e-09 | 15 |
excretory tube | 6.78e-09 | 16 |
kidney epithelium | 6.78e-09 | 16 |
nephron tubule epithelium | 2.94e-08 | 10 |
organ component layer | 1.66e-07 | 66 |
bile duct | 7.05e-07 | 6 |
digestive system duct | 7.05e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.90e-18 | 2 |
squamous cell carcinoma | 3.83e-10 | 14 |