FFCP PHASE1:Hg19::chr19:49222956..49222990,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:49222956..49222990,-
|short_description=p2@MAMSTR
|description=CAGE_peak_2_at_MAMSTR_5end
|association_with_transcript=0bp_to_ENST00000318083,ENST00000377...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284358 | |EntrezGene=284358 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26689 | |HGNC=26689 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZN01 | |UniProt=Q6ZN01 | ||
|association_with_transcript=0bp_to_ENST00000318083,ENST00000377367,ENST00000419611,NM_001130915,uc002pkg.2_5end | |||
|cluster_id=chr19:49222956..49222990,- | |||
|coexpression_cluster_id=C134 | |||
|description=CAGE_peak_2_at_MAMSTR_5end | |||
|id=chr19:49222956..49222990,- | |||
|ontology_enrichment_celltype=CL:1000507!2.07e-13!12;CL:1000494!2.07e-13!12;CL:1000449!2.92e-11!16;CL:0000188!7.81e-10!9;CL:1000497!1.11e-09!18;CL:0002518!1.11e-09!18;CL:0002322!8.17e-09!5;CL:0000039!1.82e-07!7;CL:0000586!1.82e-07!7;CL:0002681!2.47e-07!13;CL:0002584!2.47e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.64e-24;10!CL:1000494;9.64e-24;10!CL:1000449;3.22e-15;15!CL:0002322;1.27e-14;5!CL:1000497;3.24e-13;17!CL:0002518;3.24e-13;17!CL:0000239;6.28e-10;3!CL:1000615;6.28e-10;3!CL:0002306;6.28e-10;3!CL:0002681;1.16e-08;12!CL:0002584;1.16e-08;12!CL:0000123;4.31e-07;2!CL:0000242;4.31e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,7.90e-24,10;CL:1000494,7.90e-24,10;CL:1000449,2.83e-15,15;CL:0002322,1.20e-14,5;CL:1000497,2.90e-13,17;CL:0002518,2.90e-13,17;CL:0000239,6.11e-10,3;CL:1000615,6.11e-10,3;CL:0002306,6.11e-10,3;CL:0002681,1.11e-08,12;CL:0002584,1.11e-08,12;CL:0000242,4.06e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.54e-07;10!UBERON:0005564;5.54e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003887!3.44e-15!21;UBERON:0004876!4.08e-14!20;UBERON:0002113!8.99e-14!27;UBERON:0003918!8.99e-14!27;UBERON:0005095!8.99e-14!27;UBERON:0007687!8.99e-14!27;UBERON:0000080!1.34e-13!18;UBERON:0002120!1.34e-13!18;UBERON:0004875!1.34e-13!18;UBERON:0005721!1.34e-13!18;UBERON:0005754!1.34e-13!18;UBERON:0007297!1.34e-13!18;UBERON:0009773!2.07e-13!12;UBERON:0001231!2.07e-13!12;UBERON:0004810!2.07e-13!12;UBERON:0003103!1.46e-12!69;UBERON:0006555!1.48e-12!17;UBERON:0005103!1.48e-12!17;UBERON:0000083!1.48e-12!17;UBERON:0009201!1.48e-12!17;UBERON:0004819!1.48e-12!17;UBERON:0006553!1.48e-12!17;UBERON:0003074!1.48e-12!17;UBERON:0003060!1.48e-12!17;UBERON:0000489!3.95e-12!32;UBERON:0004211!2.92e-11!16;UBERON:0001285!2.92e-11!16;UBERON:0007684!2.92e-11!16;UBERON:0003220!2.92e-11!16;UBERON:0004208!2.92e-11!16;UBERON:0003135!9.61e-11!11;UBERON:0003886!1.23e-10!63;UBERON:0005172!3.99e-10!55;UBERON:0005173!3.99e-10!55;UBERON:0003064!5.75e-10!37;UBERON:0002553!9.57e-10!70;UBERON:0007023!1.72e-09!115;UBERON:0006554!2.56e-09!44;UBERON:0000473!5.17e-09!8;UBERON:0001008!5.42e-09!45;UBERON:0002417!1.67e-08!61;UBERON:0000916!1.67e-08!61;UBERON:0003104!1.92e-08!238;UBERON:0009142!1.92e-08!238;UBERON:0000058!2.62e-08!26;UBERON:0000464!8.13e-08!104;UBERON:0001225!2.47e-07!13;UBERON:0008987!2.47e-07!13;UBERON:0001851!2.74e-07!16;UBERON:0005177!6.24e-07!107;UBERON:0000466!6.78e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.64e-24;10!UBERON:0009773;9.64e-24;10!UBERON:0001231;9.64e-24;10!UBERON:0004810;9.64e-24;10!UBERON:0006555;3.22e-15;15!UBERON:0004819;3.22e-15;15!UBERON:0001285;3.22e-15;15!UBERON:0007684;3.22e-15;15!UBERON:0002113;2.84e-13;24!UBERON:0011143;2.84e-13;24!UBERON:0000489;1.44e-10;29!UBERON:0006554;3.89e-10;30!UBERON:0001008;3.89e-10;30!UBERON:0006853;6.28e-10;3!UBERON:0007685;6.28e-10;3!UBERON:0004134;6.28e-10;3!UBERON:0000922;2.20e-09;49!UBERON:0001851;3.23e-09;15!UBERON:0003135;3.95e-09;11!UBERON:0001134;5.84e-09;16!UBERON:0002036;5.84e-09;16!UBERON:0001225;1.16e-08;12!UBERON:0008987;1.16e-08;12!UBERON:0005090;6.91e-08;2!UBERON:0001630;6.91e-08;2!UBERON:0005172;8.80e-08;52!UBERON:0005173;8.80e-08;52!UBERON:0000341;9.10e-08;2!UBERON:0000007;3.76e-07;2!UBERON:0000353;8.72e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,7.90e-24,10;UBERON:0006555,1.65e-17,16;UBERON:0004819,1.65e-17,16;UBERON:0004211,2.83e-15,15;UBERON:0009773,2.83e-15,15;UBERON:0001231,2.83e-15,15;UBERON:0001285,2.83e-15,15;UBERON:0007684,2.83e-15,15;UBERON:0004208,2.83e-15,15;UBERON:0002113,1.91e-14,26;UBERON:0003918,1.91e-14,26;UBERON:0011143,1.91e-14,26;UBERON:0005095,1.91e-14,26;UBERON:0007687,1.91e-14,26;UBERON:0005172,5.58e-14,54;UBERON:0005173,5.58e-14,54;UBERON:0002417,3.95e-12,60;UBERON:0000916,3.95e-12,60;UBERON:0000489,1.13e-11,31;UBERON:0006853,6.11e-10,3;UBERON:0007685,6.11e-10,3;UBERON:0004134,6.11e-10,3;UBERON:0001851,3.11e-09,15;UBERON:0003135,4.54e-09,11;UBERON:0001225,1.11e-08,12;UBERON:0008987,1.11e-08,12;UBERON:0005177,4.24e-08,101;UBERON:0005090,6.91e-08,2;UBERON:0001630,6.91e-08,2;UBERON:0000341,9.26e-08,2;UBERON:0003103,1.08e-07,68;UBERON:0000007,3.82e-07,2;UBERON:0006554,8.19e-07,47;UBERON:0000353,8.44e-07,15 | |||
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| ||
|short_description=p2@MAMSTR | |||
}} | }} |
Latest revision as of 03:53, 19 September 2015
Short description: | p2@MAMSTR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_MAMSTR_5end |
Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
Association with transcript: | 0bp_to_ENST00000318083, ENST00000377367, ENST00000419611, NM_001130915, uc002pkg.2_5end |
EntrezGene: | MAMSTR |
HGNC: | 26689 |
UniProt: | Q6ZN01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 7.90e-24 | 10 |
nephron tubule epithelial cell | 7.90e-24 | 10 |
epithelial cell of nephron | 2.83e-15 | 15 |
embryonic stem cell | 1.20e-14 | 5 |
kidney cell | 2.90e-13 | 17 |
kidney epithelial cell | 2.90e-13 | 17 |
brush border epithelial cell | 6.11e-10 | 3 |
kidney cortex tubule cell | 6.11e-10 | 3 |
epithelial cell of proximal tubule | 6.11e-10 | 3 |
kidney cortical cell | 1.11e-08 | 12 |
renal cortical epithelial cell | 1.11e-08 | 12 |
Merkel cell | 4.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 7.90e-24 | 10 |
excretory tube | 1.65e-17 | 16 |
kidney epithelium | 1.65e-17 | 16 |
nephron epithelium | 2.83e-15 | 15 |
renal tubule | 2.83e-15 | 15 |
nephron tubule | 2.83e-15 | 15 |
nephron | 2.83e-15 | 15 |
uriniferous tubule | 2.83e-15 | 15 |
nephrogenic mesenchyme | 2.83e-15 | 15 |
kidney | 1.91e-14 | 26 |
kidney mesenchyme | 1.91e-14 | 26 |
upper urinary tract | 1.91e-14 | 26 |
kidney rudiment | 1.91e-14 | 26 |
kidney field | 1.91e-14 | 26 |
abdomen element | 5.58e-14 | 54 |
abdominal segment element | 5.58e-14 | 54 |
abdominal segment of trunk | 3.95e-12 | 60 |
abdomen | 3.95e-12 | 60 |
cavitated compound organ | 1.13e-11 | 31 |
renal cortex tubule | 6.11e-10 | 3 |
region of nephron tubule | 6.11e-10 | 3 |
proximal tubule | 6.11e-10 | 3 |
cortex | 3.11e-09 | 15 |
male reproductive organ | 4.54e-09 | 11 |
cortex of kidney | 1.11e-08 | 12 |
renal parenchyma | 1.11e-08 | 12 |
trunk region element | 4.24e-08 | 101 |
muscle structure | 6.91e-08 | 2 |
muscle organ | 6.91e-08 | 2 |
throat | 9.26e-08 | 2 |
compound organ | 1.08e-07 | 68 |
pituitary gland | 3.82e-07 | 2 |
urinary system structure | 8.19e-07 | 47 |
parenchyma | 8.44e-07 | 15 |