FFCP PHASE1:Hg19::chr4:5894801..5894820,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:5894801..5894820,- to FFCP PHASE1:Hg19::chr4:5894801..5894820,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1400 | |EntrezGene=1400 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2365 | |HGNC=2365 | ||
|TSSclassifier=strong | |||
|UniProt=A0EJG6,B3KT07,Q96I11 | |UniProt=A0EJG6,B3KT07,Q96I11 | ||
|association_with_transcript=-16bp_to_ENST00000324989,NM_001014809,uc003gis.2_5end | |||
|cluster_id=chr4:5894801..5894820,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_2_at_CRMP1_5end | |||
|id=chr4:5894801..5894820,- | |||
|ontology_enrichment_celltype=CL:0002319!1.10e-14!25;CL:0000133!6.08e-12!59;CL:0000047!3.95e-11!8;CL:0000540!7.79e-09!6;CL:0000031!7.79e-09!6;CL:0000404!7.79e-09!6;CL:0000221!1.50e-08!71;CL:0000333!1.21e-07!41;CL:0000095!7.30e-07!17;CL:0000123!7.30e-07!17;CL:0002322!9.75e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000540;4.25e-13;6!CL:0000404;4.25e-13;6!CL:0002322;8.03e-10;5!CL:0002321;6.38e-08;15!CL:0002319;6.62e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,9.80e-17,8;CL:0000540,4.25e-13,6;CL:0000031,4.25e-13,6;CL:0000404,4.25e-13,6;CL:0002322,8.79e-10,5;CL:0000133,4.64e-08,59;CL:0002319,6.65e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.26e-17;82!CL:0000031;4.25e-13;6!UBERON:0006215;1.10e-07;3!UBERON:0003056;6.87e-07;3 | |||
|ontology_enrichment_disease=DOID:171!2.31e-07!10;DOID:3095!9.49e-07!22;DOID:2994!9.49e-07!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.63e-74!82;UBERON:0000073!5.28e-74!94;UBERON:0001016!5.28e-74!94;UBERON:0005743!3.82e-72!86;UBERON:0001049!1.08e-65!57;UBERON:0005068!1.08e-65!57;UBERON:0006241!1.08e-65!57;UBERON:0007135!1.08e-65!57;UBERON:0000955!1.17e-58!69;UBERON:0006238!1.17e-58!69;UBERON:0002616!1.80e-55!59;UBERON:0002346!3.97e-52!90;UBERON:0002780!3.57e-50!41;UBERON:0001890!3.57e-50!41;UBERON:0006240!3.57e-50!41;UBERON:0003080!1.24e-48!42;UBERON:0003075!1.74e-48!86;UBERON:0007284!1.74e-48!86;UBERON:0000924!1.62e-47!173;UBERON:0006601!1.62e-47!173;UBERON:0004121!2.90e-44!169;UBERON:0001893!6.31e-42!34;UBERON:0002020!9.55e-42!34;UBERON:0003528!9.55e-42!34;UBERON:0002791!1.49e-40!33;UBERON:0001869!4.42e-40!32;UBERON:0007023!1.66e-34!115;UBERON:0003056!4.34e-34!61;UBERON:0000956!2.89e-32!25;UBERON:0000203!2.89e-32!25;UBERON:0000033!1.26e-31!123;UBERON:0000153!4.24e-31!129;UBERON:0007811!4.24e-31!129;UBERON:0002619!5.42e-30!22;UBERON:0001950!1.26e-27!20;UBERON:0003076!2.06e-17!15;UBERON:0003057!2.06e-17!15;UBERON:0000025!6.68e-16!194;UBERON:0004732!2.84e-15!13;UBERON:0004733!2.28e-14!12;UBERON:0002028!2.28e-14!12;UBERON:0007277!2.28e-14!12;UBERON:0000922!2.27e-12!612;UBERON:0004111!2.37e-12!241;UBERON:0000064!9.88e-12!219;UBERON:0001871!2.39e-11!7;UBERON:0002680!2.64e-11!9;UBERON:0001895!2.64e-11!9;UBERON:0010092!2.64e-11!9;UBERON:0002420!3.63e-11!9;UBERON:0007245!3.63e-11!9;UBERON:0010009!3.63e-11!9;UBERON:0010011!3.63e-11!9;UBERON:0000454!3.63e-11!9;UBERON:0002308!8.26e-11!9;UBERON:0000125!8.26e-11!9;UBERON:0000477!1.12e-10!286;UBERON:0000483!9.40e-10!309;UBERON:0002050!1.15e-09!605;UBERON:0005423!1.15e-09!605;UBERON:0000468!1.34e-09!659;UBERON:0001894!1.79e-09!7;UBERON:0006222!1.79e-09!7;UBERON:0000119!1.89e-09!312;UBERON:0000923!2.70e-09!604;UBERON:0005291!2.70e-09!604;UBERON:0006598!2.70e-09!604;UBERON:0002532!2.70e-09!604;UBERON:0000200!6.89e-09!6;UBERON:0009663!1.09e-08!7;UBERON:0000475!1.17e-08!365;UBERON:0002021!5.81e-08!5;UBERON:0002037!6.36e-08!6;UBERON:0006215!6.36e-08!6;UBERON:0001872!6.50e-08!5;UBERON:0000349!1.12e-07!5;UBERON:0002298!1.39e-07!8;UBERON:0000467!5.07e-07!625;UBERON:0000480!5.90e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.03e-47;32!UBERON:0002780;5.98e-47;41!UBERON:0001890;5.98e-47;41!UBERON:0002619;9.90e-47;22!UBERON:0001893;3.50e-45;34!UBERON:0003528;5.59e-45;34!UBERON:0002020;5.59e-45;34!UBERON:0002791;4.00e-44;32!UBERON:0001950;5.68e-43;20!UBERON:0000073;7.79e-43;53!UBERON:0002616;7.79e-43;53!UBERON:0000956;1.67e-40;25!UBERON:0000203;1.67e-40;25!UBERON:0000955;4.15e-31;68!UBERON:0001017;4.72e-30;75!UBERON:0001016;3.79e-28;83!UBERON:0001871;3.16e-15;6!UBERON:0004732;2.43e-14;13!UBERON:0001894;3.70e-14;7!UBERON:0002420;1.56e-13;9!UBERON:0007245;1.56e-13;9!UBERON:0010009;1.56e-13;9!UBERON:0010011;1.56e-13;9!UBERON:0000454;1.56e-13;9!UBERON:0000200;3.62e-13;6!UBERON:0000125;4.88e-13;9!UBERON:0002308;4.88e-13;9!UBERON:0004733;6.31e-13;12!UBERON:0002028;6.31e-13;12!UBERON:0002298;6.95e-12;6!UBERON:0007023;9.74e-12;114!UBERON:0002021;1.12e-11;5!UBERON:0001872;1.17e-11;5!UBERON:0000349;3.23e-11;5!UBERON:0011216;1.61e-10;132!UBERON:0009663;9.51e-10;7!UBERON:0003296;2.70e-09;4!UBERON:0010133;2.70e-09;4!UBERON:0002784;6.24e-09;4!UBERON:0000369;1.91e-08;4!UBERON:0002435;1.91e-08;4!UBERON:0000204;1.91e-08;4!UBERON:0002680;2.07e-08;9!UBERON:0001895;2.07e-08;9!UBERON:0001870;2.96e-07;3!UBERON:0000988;5.17e-07;3!UBERON:0010314;7.45e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.03e-89,89;UBERON:0001017,1.64e-87,81;UBERON:0001049,1.44e-79,56;UBERON:0005068,1.44e-79,56;UBERON:0006241,1.44e-79,56;UBERON:0007135,1.44e-79,56;UBERON:0000073,1.67e-77,53;UBERON:0002616,1.67e-77,53;UBERON:0000955,6.32e-69,68;UBERON:0006238,6.32e-69,68;UBERON:0002780,1.15e-65,41;UBERON:0001890,1.15e-65,41;UBERON:0003080,1.15e-65,41;UBERON:0006240,1.15e-65,41;UBERON:0003075,2.66e-57,82;UBERON:0007284,2.66e-57,82;UBERON:0002346,2.12e-56,86;UBERON:0001869,6.53e-53,32;UBERON:0001893,1.05e-52,34;UBERON:0003528,1.90e-52,34;UBERON:0002020,1.90e-52,34;UBERON:0002791,5.83e-49,32;UBERON:0003056,3.33e-48,61;UBERON:0002619,8.98e-47,22;UBERON:0010371,1.69e-46,104;UBERON:0004121,3.07e-45,171;UBERON:0000924,3.07e-45,171;UBERON:0006601,3.07e-45,171;UBERON:0001950,5.32e-43,20;UBERON:0000956,1.54e-40,25;UBERON:0000203,1.54e-40,25;UBERON:0011216,2.50e-34,223;UBERON:0007023,1.28e-33,114;UBERON:0010314,1.20e-31,132;UBERON:0000025,1.50e-17,192;UBERON:0001871,3.17e-15,6;UBERON:0003076,5.53e-15,15;UBERON:0003057,5.53e-15,15;UBERON:0004732,2.45e-14,13;UBERON:0001894,4.16e-14,7;UBERON:0006222,4.16e-14,7;UBERON:0002420,1.19e-13,9;UBERON:0007245,1.19e-13,9;UBERON:0010009,1.19e-13,9;UBERON:0010011,1.19e-13,9;UBERON:0000454,1.19e-13,9;UBERON:0000200,3.50e-13,6;UBERON:0000125,3.82e-13,9;UBERON:0002308,3.82e-13,9;UBERON:0004733,6.13e-13,12;UBERON:0002028,6.13e-13,12;UBERON:0007277,6.13e-13,12;UBERON:0002298,6.67e-12,6;UBERON:0002021,1.02e-11,5;UBERON:0001872,1.22e-11,5;UBERON:0004111,2.39e-11,240;UBERON:0000349,2.87e-11,5;UBERON:0000483,4.54e-10,306;UBERON:0009663,7.63e-10,7;UBERON:0000119,7.82e-10,309;UBERON:0003296,3.15e-09,4;UBERON:0010133,3.15e-09,4;UBERON:0002784,6.38e-09,4;UBERON:0000922,7.65e-09,592;UBERON:0000369,1.64e-08,4;UBERON:0002435,1.64e-08,4;UBERON:0000204,1.64e-08,4;UBERON:0010082,1.64e-08,4;UBERON:0002680,2.02e-08,9;UBERON:0001895,2.02e-08,9;UBERON:0010092,2.02e-08,9;UBERON:0000923,2.66e-07,560;UBERON:0010316,2.66e-07,560;UBERON:0005291,2.66e-07,560;UBERON:0006598,2.66e-07,560;UBERON:0010317,2.66e-07,560;UBERON:0002532,2.66e-07,560;UBERON:0001870,2.90e-07,3;UBERON:0002050,4.09e-07,564;UBERON:0000988,4.95e-07,3 | |||
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|short_description=p2@CRMP1 | |||
}} | }} |
Latest revision as of 04:06, 18 September 2015
Short description: | p2@CRMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CRMP1_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | -16bp_to_ENST00000324989, NM_001014809, uc003gis.2_5end |
EntrezGene: | CRMP1 |
HGNC: | 2365 |
UniProt: | A0EJG6B3KT07Q96I11 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 9.80e-17 | 8 |
neuron | 4.25e-13 | 6 |
neuroblast | 4.25e-13 | 6 |
electrically signaling cell | 4.25e-13 | 6 |
embryonic stem cell | 8.79e-10 | 5 |
neurectodermal cell | 4.64e-08 | 59 |
neural cell | 6.65e-08 | 25 |