FFCP PHASE1:Hg19::chr7:27183325..27183338,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:27183325..27183338,- to FFCP PHASE1:Hg19::chr7:27183325..27183338,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3202 | |EntrezGene=3202 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5106 | |HGNC=5106 | ||
|TSSclassifier=strong | |||
|UniProt=P20719 | |UniProt=P20719 | ||
|association_with_transcript=-38bp_to_ENST00000222726,NM_019102,uc003syn.1_5end | |||
|cluster_id=chr7:27183325..27183338,- | |||
|coexpression_cluster_id=C4680 | |||
|description=CAGE_peak_5_at_HOXA5_5end | |||
|id=chr7:27183325..27183338,- | |||
|ontology_enrichment_celltype=CL:0000222!2.57e-10!119;CL:0000213!2.15e-09!57;CL:0000215!2.15e-09!57;CL:0002139!1.52e-08!24;CL:0000071!3.18e-08!18;CL:0002546!3.18e-08!18;CL:1000497!1.85e-07!18;CL:0002518!1.85e-07!18;CL:0000115!3.21e-07!35;CL:0002078!8.52e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0002564;1.19e-10;3!CL:0002618;3.35e-10;3!CL:0002543;1.22e-08;6!CL:0002593;6.42e-08;2!CL:1000746;3.06e-07;7!CL:1000612;3.06e-07;7!CL:0000650;3.84e-07;2!CL:1000500;3.84e-07;2!CL:1000618;3.84e-07;2!CL:1001318;3.84e-07;2!CL:0002173;3.84e-07;2!CL:0002600;3.84e-07;2!CL:1000449;5.80e-07;15!CL:0002595;6.69e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,2.26e-10,3;CL:0002618,2.33e-10,3;CL:0000222,3.24e-09,121;CL:0002543,6.93e-09,6;CL:0002593,7.02e-08,2;CL:0000213,9.41e-08,58;CL:0000215,9.41e-08,58;CL:0000650,1.96e-07,2;CL:1000500,1.96e-07,2;CL:1000618,1.96e-07,2;CL:1001318,1.96e-07,2;CL:0002173,1.96e-07,2;CL:1000746,2.07e-07,7;CL:1000612,2.07e-07,7;CL:1000449,3.86e-07,15;CL:0002600,6.00e-07,2;CL:0002595,7.06e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.64e-11;3!UBERON:0003057;2.64e-11;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!1.17e-13!113;UBERON:0000489!5.49e-12!32;UBERON:0005177!4.90e-10!107;UBERON:0002100!8.07e-10!216;UBERON:0002113!3.58e-09!27;UBERON:0003918!3.58e-09!27;UBERON:0005095!3.58e-09!27;UBERON:0007687!3.58e-09!27;UBERON:0000487!7.90e-09!22;UBERON:0002417!8.20e-09!61;UBERON:0000916!8.20e-09!61;UBERON:0001986!3.18e-08!18;UBERON:0004638!3.18e-08!18;UBERON:0004852!3.18e-08!18;UBERON:0003914!9.08e-08!118;UBERON:0006554!1.02e-07!44;UBERON:0003887!1.07e-07!21;UBERON:0001008!2.09e-07!45;UBERON:0000464!2.20e-07!104;UBERON:0001981!2.70e-07!60;UBERON:0007500!2.70e-07!60;UBERON:0004537!2.70e-07!60;UBERON:0006965!2.70e-07!60;UBERON:0000055!2.75e-07!69;UBERON:0006914!3.01e-07!25;UBERON:0005174!4.33e-07!5;UBERON:0001137!4.33e-07!5;UBERON:0006555!8.14e-07!17;UBERON:0005103!8.14e-07!17;UBERON:0000083!8.14e-07!17;UBERON:0009201!8.14e-07!17;UBERON:0004819!8.14e-07!17;UBERON:0006553!8.14e-07!17;UBERON:0003074!8.14e-07!17;UBERON:0003060!8.14e-07!17;UBERON:0003586!8.96e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.40e-13;29!UBERON:0002240;2.64e-11;3!UBERON:0005174;2.64e-11;3!UBERON:0001137;2.64e-11;3!UBERON:0011135;1.04e-10;5!UBERON:0002216;1.04e-10;5!UBERON:0011134;1.04e-10;5!UBERON:0002209;1.04e-10;5!UBERON:0002213;1.04e-10;5!UBERON:0007844;1.04e-10;5!UBERON:0011138;1.04e-10;5!UBERON:0001130;1.04e-10;5!UBERON:0001066;1.04e-10;5!UBERON:0001468;1.04e-10;5!UBERON:0002242;1.19e-10;3!UBERON:0001896;2.47e-10;3!UBERON:0005290;2.47e-10;3!UBERON:0002113;6.34e-09;24!UBERON:0011143;6.34e-09;24!UBERON:0002298;1.00e-08;6!UBERON:0003513;3.02e-08;7!UBERON:0002456;6.42e-08;2!UBERON:0000074;3.06e-07;7!UBERON:0001229;3.06e-07;7!UBERON:0003567;3.84e-07;2!UBERON:0003838;3.84e-07;2!UBERON:0003586;3.84e-07;2!UBERON:0005169;3.84e-07;2!UBERON:0002321;3.84e-07;2!UBERON:0005215;3.84e-07;2!UBERON:0002303;3.84e-07;2!UBERON:0002319;3.84e-07;2!UBERON:0000353;5.20e-07;15!UBERON:0006555;5.80e-07;15!UBERON:0004819;5.80e-07;15!UBERON:0001285;5.80e-07;15!UBERON:0007684;5.80e-07;15!UBERON:0003834;6.69e-07;5!UBERON:0001533;6.69e-07;5!UBERON:0006554;7.93e-07;30!UBERON:0001008;7.93e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.92e-12,31;UBERON:0002240,3.21e-11,3;UBERON:0005174,3.21e-11,3;UBERON:0001137,3.21e-11,3;UBERON:0011135,1.85e-10,5;UBERON:0002216,1.85e-10,5;UBERON:0011134,1.85e-10,5;UBERON:0002209,1.85e-10,5;UBERON:0002213,1.85e-10,5;UBERON:0005856,1.85e-10,5;UBERON:0005866,1.85e-10,5;UBERON:0005863,1.85e-10,5;UBERON:0007844,1.85e-10,5;UBERON:0011138,1.85e-10,5;UBERON:0001130,1.85e-10,5;UBERON:0001066,1.85e-10,5;UBERON:0001468,1.85e-10,5;UBERON:0001896,2.12e-10,3;UBERON:0005290,2.12e-10,3;UBERON:0010096,2.12e-10,3;UBERON:0002242,2.26e-10,3;UBERON:0003068,2.26e-10,3;UBERON:0002328,2.26e-10,3;UBERON:0004880,2.26e-10,3;UBERON:0003076,6.87e-10,15;UBERON:0003057,6.87e-10,15;UBERON:0002298,1.21e-08,6;UBERON:0009569,1.69e-08,112;UBERON:0003513,2.95e-08,7;UBERON:0002113,2.99e-08,26;UBERON:0003918,2.99e-08,26;UBERON:0011143,2.99e-08,26;UBERON:0005095,2.99e-08,26;UBERON:0007687,2.99e-08,26;UBERON:0002456,7.02e-08,2;UBERON:0003567,1.96e-07,2;UBERON:0003838,1.96e-07,2;UBERON:0003586,1.96e-07,2;UBERON:0005169,1.96e-07,2;UBERON:0002321,1.96e-07,2;UBERON:0005215,1.96e-07,2;UBERON:0002303,1.96e-07,2;UBERON:0002319,1.96e-07,2;UBERON:0010532,2.07e-07,7;UBERON:0000074,2.07e-07,7;UBERON:0001229,2.07e-07,7;UBERON:0001230,2.07e-07,7;UBERON:0003220,2.07e-07,7;UBERON:0005749,2.07e-07,7;UBERON:0004199,2.07e-07,7;UBERON:0004209,2.07e-07,7;UBERON:0004198,2.07e-07,7;UBERON:0000353,3.39e-07,15;UBERON:0004211,3.86e-07,15;UBERON:0009773,3.86e-07,15;UBERON:0001231,3.86e-07,15;UBERON:0001285,3.86e-07,15;UBERON:0007684,3.86e-07,15;UBERON:0004208,3.86e-07,15;UBERON:0003834,7.06e-07,5;UBERON:0001533,7.06e-07,5 | |||
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| ||
|short_description=p5@HOXA5 | |||
}} | }} |
Latest revision as of 01:32, 18 September 2015
Short description: | p5@HOXA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXA5_5end |
Coexpression cluster: | C4680_Smooth_clear_gastric_Mesothelial_glioma_rectum_melanoma |
Association with transcript: | -38bp_to_ENST00000222726, NM_019102, uc003syn.1_5end |
EntrezGene: | HOXA5 |
HGNC: | 5106 |
UniProt: | P20719 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 2.26e-10 | 3 |
endothelial cell of umbilical vein | 2.33e-10 | 3 |
mesodermal cell | 3.24e-09 | 121 |
vein endothelial cell | 6.93e-09 | 6 |
smooth muscle cell of the internal thoracic artery | 7.02e-08 | 2 |
lining cell | 9.41e-08 | 58 |
barrier cell | 9.41e-08 | 58 |
mesangial cell | 1.96e-07 | 2 |
kidney interstitial cell | 1.96e-07 | 2 |
juxtaglomerular complex cell | 1.96e-07 | 2 |
renal interstitial pericyte | 1.96e-07 | 2 |
extraglomerular mesangial cell | 1.96e-07 | 2 |
glomerular cell | 2.07e-07 | 7 |
kidney corpuscule cell | 2.07e-07 | 7 |
epithelial cell of nephron | 3.86e-07 | 15 |
smooth muscle cell of trachea | 6.00e-07 | 2 |
smooth muscle cell of the subclavian artery | 7.06e-07 | 5 |