FFCP PHASE1:Hg19::chr7:27170359..27170381,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_ENST00000428284_5end | |association_with_transcript=-7bp_to_ENST00000428284_5end | ||
|cluster_id=chr7:27170359..27170381,- | |||
|coexpression_cluster_id=C4679 | |coexpression_cluster_id=C4679 | ||
|description=CAGE_peak_1_at_HOXA4_5end | |description=CAGE_peak_1_at_HOXA4_5end | ||
|id=chr7:27170359..27170381,- | |id=chr7:27170359..27170381,- | ||
|ontology_enrichment_celltype=CL:0000222!2.23e-13!119;CL:1000497!1.65e-12!18;CL:0002518!1.65e-12!18;CL:1000449!3.69e-11!16;CL:0000213!8.74e-11!57;CL:0000215!8.74e-11!57;CL:0002078!2.41e-09!44;CL:0002681!5.76e-09!13;CL:0002584!5.76e-09!13;CL:1000507!1.17e-08!12;CL:1000494!1.17e-08!12;CL:0000076!2.75e-08!62;CL:0000115!6.78e-08!35;CL:0002139!1.70e-07!24 | |ontology_enrichment_celltype=CL:0000222!2.23e-13!119;CL:1000497!1.65e-12!18;CL:0002518!1.65e-12!18;CL:1000449!3.69e-11!16;CL:0000213!8.74e-11!57;CL:0000215!8.74e-11!57;CL:0002078!2.41e-09!44;CL:0002681!5.76e-09!13;CL:0002584!5.76e-09!13;CL:1000507!1.17e-08!12;CL:1000494!1.17e-08!12;CL:0000076!2.75e-08!62;CL:0000115!6.78e-08!35;CL:0002139!1.70e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.72e-18;17!CL:0002518;2.72e-18;17!CL:1000449;4.22e-16;15!CL:0002681;1.56e-12;12!CL:0002584;1.56e-12;12!CL:1000507;1.78e-11;10!CL:1000494;1.78e-11;10!CL:1000746;1.25e-08;7!CL:1000612;1.25e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.39e-18,17;CL:0002518,1.39e-18,17;CL:1000449,2.16e-16,15;CL:0002681,7.76e-13,12;CL:0002584,7.76e-13,12;CL:1000507,1.14e-11,10;CL:1000494,1.14e-11,10;CL:0000222,3.20e-11,121;CL:0000213,3.43e-10,58;CL:0000215,3.43e-10,58;CL:1000746,9.75e-09,7;CL:1000612,9.75e-09,7;CL:0002078,1.12e-08,45;CL:0000115,4.69e-08,36;CL:0000076,9.93e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0000489;5.98e-23;29!UBERON:0002113;7.81e-18;24!UBERON:0011143;7.81e-18;24!UBERON:0006555;4.22e-16;15!UBERON:0004819;4.22e-16;15!UBERON:0001285;4.22e-16;15!UBERON:0007684;4.22e-16;15!UBERON:0006554;7.97e-16;30!UBERON:0001008;7.97e-16;30!UBERON:0001225;1.56e-12;12!UBERON:0008987;1.56e-12;12!UBERON:0004211;1.78e-11;10!UBERON:0009773;1.78e-11;10!UBERON:0001231;1.78e-11;10!UBERON:0004810;1.78e-11;10!UBERON:0000353;3.61e-11;15!UBERON:0001851;8.29e-11;15!UBERON:0002417;3.95e-10;58!UBERON:0000916;3.95e-10;58!UBERON:0005172;1.55e-09;52!UBERON:0005173;1.55e-09;52!UBERON:0003914;2.69e-09;74!UBERON:0000074;1.25e-08;7!UBERON:0001229;1.25e-08;7!UBERON:0003103;3.22e-07;61!UBERON:0000025;4.77e-07;93 | |||
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| ||
|short_description=p1@HOXA4 | |short_description=p1@HOXA4 | ||
}} | }} |
Latest revision as of 01:22, 18 September 2015
Short description: | p1@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA4_5end |
Coexpression cluster: | C4679_clear_Smooth_Mesothelial_Alveolar_Renal_gastric_mesothelioma |
Association with transcript: | -7bp_to_ENST00000428284_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.39e-18 | 17 |
kidney epithelial cell | 1.39e-18 | 17 |
epithelial cell of nephron | 2.16e-16 | 15 |
kidney cortical cell | 7.76e-13 | 12 |
renal cortical epithelial cell | 7.76e-13 | 12 |
kidney tubule cell | 1.14e-11 | 10 |
nephron tubule epithelial cell | 1.14e-11 | 10 |
mesodermal cell | 3.20e-11 | 121 |
lining cell | 3.43e-10 | 58 |
barrier cell | 3.43e-10 | 58 |
glomerular cell | 9.75e-09 | 7 |
kidney corpuscule cell | 9.75e-09 | 7 |
meso-epithelial cell | 1.12e-08 | 45 |
endothelial cell | 4.69e-08 | 36 |
squamous epithelial cell | 9.93e-07 | 63 |