FFCP PHASE1:Hg19::chr2:114036488..114036504,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7849 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8622 | |||
|TSSclassifier=strong | |||
|UniProt=Q06710 | |||
|association_with_transcript=0bp_to_ENST00000263335,ENST00000348715,ENST00000397647,ENST00000467778,NM_003466,NM_013952,NM_013953,NM_013992,uc002tjm.2,uc002tjn.2,uc010fku.1,uc010yxt.1,uc010yxu.1,uc010yxv.1_5end | |||
|cluster_id=chr2:114036488..114036504,- | |||
|coexpression_cluster_id=C4118 | |||
|description=CAGE_peak_1_at_PAX8_5end | |||
|id=chr2:114036488..114036504,- | |||
|ontology_enrichment_celltype=CL:1000497!2.10e-20!18;CL:0002518!2.10e-20!18;CL:1000507!1.77e-17!12;CL:1000494!1.77e-17!12;CL:1000449!2.21e-17!16;CL:0002681!1.02e-12!13;CL:0002584!1.02e-12!13;CL:0000128!2.66e-08!7;CL:0000126!2.66e-08!7;CL:0000127!2.66e-08!7;CL:0002453!2.66e-08!7;CL:0002149!2.80e-08!6;CL:0002255!2.80e-08!6;CL:0002322!8.21e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.81e-26;17!CL:0002518;3.81e-26;17!CL:1000507;2.26e-24;10!CL:1000494;2.26e-24;10!CL:1000449;4.92e-22;15!CL:0002681;1.06e-15;12!CL:0002584;1.06e-15;12!CL:0000128;6.94e-11;7!CL:0000126;6.94e-11;7!CL:0000127;6.94e-11;7!CL:0002149;8.41e-11;6!CL:0002255;8.41e-11;6!CL:0000239;1.51e-08;3!CL:1000615;1.51e-08;3!CL:0002306;1.51e-08;3!CL:0002603;1.47e-07;3!CL:0000346;2.87e-07;3!CL:1000428;2.87e-07;3!CL:0002605;6.33e-07;3!CL:0002541;7.06e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,3.89e-26,17;CL:0002518,3.89e-26,17;CL:1000507,2.35e-24,10;CL:1000494,2.35e-24,10;CL:1000449,4.97e-22,15;CL:0002681,1.07e-15,12;CL:0002584,1.07e-15,12;CL:0000128,7.84e-11,7;CL:0000126,7.84e-11,7;CL:0000127,7.84e-11,7;CL:0002453,7.84e-11,7;CL:0002149,8.16e-11,6;CL:0002255,8.16e-11,6;CL:0000239,1.51e-08,3;CL:1000615,1.51e-08,3;CL:0002306,1.51e-08,3;CL:0002603,1.51e-07,3;CL:0000346,2.48e-07,3;CL:1000428,2.48e-07,3;CL:0002605,7.14e-07,3;CL:0002541,7.78e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.86e-11;10!UBERON:0007123;7.47e-09;5 | |||
|ontology_enrichment_disease=DOID:120!2.34e-17!27;DOID:193!8.94e-16!29;DOID:2394!2.11e-10!14;DOID:3001!2.80e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:120;2.11e-19;27!DOID:193;9.39e-18;29!DOID:3001;8.41e-11;6!DOID:2394;1.71e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,2.10e-19,27;DOID:193,9.34e-18,29;DOID:3001,8.16e-11,6;DOID:2394,1.72e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000489!2.62e-24!32;UBERON:0002113!9.55e-21!27;UBERON:0003918!9.55e-21!27;UBERON:0005095!9.55e-21!27;UBERON:0007687!9.55e-21!27;UBERON:0000080!2.04e-20!18;UBERON:0002120!2.04e-20!18;UBERON:0004875!2.04e-20!18;UBERON:0005721!2.04e-20!18;UBERON:0005754!2.04e-20!18;UBERON:0007297!2.04e-20!18;UBERON:0004876!3.04e-20!20;UBERON:0006555!6.37e-19!17;UBERON:0005103!6.37e-19!17;UBERON:0000083!6.37e-19!17;UBERON:0009201!6.37e-19!17;UBERON:0004819!6.37e-19!17;UBERON:0006553!6.37e-19!17;UBERON:0003074!6.37e-19!17;UBERON:0003060!6.37e-19!17;UBERON:0001008!2.22e-18!45;UBERON:0009773!1.77e-17!12;UBERON:0001231!1.77e-17!12;UBERON:0004810!1.77e-17!12;UBERON:0004211!2.21e-17!16;UBERON:0001285!2.21e-17!16;UBERON:0007684!2.21e-17!16;UBERON:0003220!2.21e-17!16;UBERON:0004208!2.21e-17!16;UBERON:0006554!2.77e-17!44;UBERON:0003887!8.00e-17!21;UBERON:0003133!5.20e-16!48;UBERON:0003064!1.20e-15!37;UBERON:0005156!4.37e-15!59;UBERON:0000990!4.37e-15!59;UBERON:0000058!1.15e-14!26;UBERON:0003886!4.43e-13!63;UBERON:0001225!1.02e-12!13;UBERON:0008987!1.02e-12!13;UBERON:0003134!2.56e-12!37;UBERON:0000474!2.56e-12!37;UBERON:0003103!3.46e-12!69;UBERON:0002553!5.56e-12!70;UBERON:0003100!1.38e-10!41;UBERON:0001851!7.69e-10!16;UBERON:0004175!2.14e-09!25;UBERON:0000353!4.12e-09!17;UBERON:0003076!1.09e-08!15;UBERON:0003057!1.09e-08!15;UBERON:0005172!4.25e-08!55;UBERON:0005173!4.25e-08!55;UBERON:0000991!8.74e-08!21;UBERON:0009196!8.74e-08!21;UBERON:0009117!8.74e-08!21;UBERON:0005564!8.74e-08!21;UBERON:0000464!1.69e-07!104;UBERON:0000992!1.70e-07!13;UBERON:0004176!2.60e-07!22;UBERON:0002046!7.98e-07!5;UBERON:0004117!7.98e-07!5;UBERON:0007689!7.98e-07!5;UBERON:0007123!7.98e-07!5;UBERON:0003091!7.98e-07!5;UBERON:0002417!8.79e-07!61;UBERON:0000916!8.79e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.26e-24;10!UBERON:0009773;2.26e-24;10!UBERON:0001231;2.26e-24;10!UBERON:0004810;2.26e-24;10!UBERON:0002113;2.24e-23;24!UBERON:0011143;2.24e-23;24!UBERON:0000489;3.23e-23;29!UBERON:0006554;1.96e-22;30!UBERON:0001008;1.96e-22;30!UBERON:0006555;4.92e-22;15!UBERON:0004819;4.92e-22;15!UBERON:0001285;4.92e-22;15!UBERON:0007684;4.92e-22;15!UBERON:0001225;1.06e-15;12!UBERON:0008987;1.06e-15;12!UBERON:0004175;3.90e-14;21!UBERON:0003134;1.19e-13;33!UBERON:0003133;2.24e-12;44!UBERON:0001851;3.78e-12;15!UBERON:0000353;3.78e-12;15!UBERON:0000474;7.79e-12;37!UBERON:0003100;2.90e-10;41!UBERON:0005156;1.24e-09;59!UBERON:0000990;1.24e-09;59!UBERON:0003975;2.27e-09;18!UBERON:0000991;4.23e-09;21!UBERON:0002046;7.47e-09;5!UBERON:0006853;1.51e-08;3!UBERON:0007685;1.51e-08;3!UBERON:0004134;1.51e-08;3!UBERON:0006947;4.94e-08;3!UBERON:0004054;4.94e-08;3!UBERON:0000992;5.00e-08;13!UBERON:0000995;5.29e-08;17!UBERON:0000412;2.87e-07;3!UBERON:0001992;2.87e-07;3!UBERON:0003124;7.06e-07;3!UBERON:0000920;7.06e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,3.35e-27,26;UBERON:0003918,3.35e-27,26;UBERON:0011143,3.35e-27,26;UBERON:0005095,3.35e-27,26;UBERON:0007687,3.35e-27,26;UBERON:0000489,6.94e-27,31;UBERON:0004810,2.35e-24,10;UBERON:0006555,4.02e-24,16;UBERON:0004819,4.02e-24,16;UBERON:0001008,1.59e-22,48;UBERON:0004211,4.97e-22,15;UBERON:0009773,4.97e-22,15;UBERON:0001231,4.97e-22,15;UBERON:0001285,4.97e-22,15;UBERON:0007684,4.97e-22,15;UBERON:0004208,4.97e-22,15;UBERON:0006554,4.13e-21,47;UBERON:0003133,7.14e-18,48;UBERON:0005156,3.18e-16,59;UBERON:0000990,3.18e-16,59;UBERON:0001225,1.07e-15,12;UBERON:0008987,1.07e-15,12;UBERON:0003134,3.23e-14,37;UBERON:0000474,3.23e-14,37;UBERON:0003103,8.39e-14,68;UBERON:0004175,3.14e-13,25;UBERON:0003100,2.17e-12,41;UBERON:0001851,3.80e-12,15;UBERON:0000353,3.80e-12,15;UBERON:0005172,1.94e-10,54;UBERON:0005173,1.94e-10,54;UBERON:0000080,2.16e-09,9;UBERON:0002120,2.16e-09,9;UBERON:0004875,2.16e-09,9;UBERON:0005721,2.16e-09,9;UBERON:0005754,2.16e-09,9;UBERON:0007297,2.16e-09,9;UBERON:0000991,4.21e-09,21;UBERON:0009196,4.21e-09,21;UBERON:0009117,4.21e-09,21;UBERON:0005564,4.21e-09,21;UBERON:0002417,6.32e-09,60;UBERON:0000916,6.32e-09,60;UBERON:0005795,6.60e-09,22;UBERON:0003975,7.32e-09,22;UBERON:0002046,7.54e-09,5;UBERON:0004117,7.54e-09,5;UBERON:0007689,7.54e-09,5;UBERON:0007123,7.54e-09,5;UBERON:0003091,7.54e-09,5;UBERON:0004176,1.36e-08,22;UBERON:0006853,1.51e-08,3;UBERON:0007685,1.51e-08,3;UBERON:0004134,1.51e-08,3;UBERON:0006947,4.94e-08,3;UBERON:0004054,4.94e-08,3;UBERON:0000992,4.94e-08,13;UBERON:0000995,1.27e-07,21;UBERON:0005103,1.35e-07,8;UBERON:0000083,1.35e-07,8;UBERON:0009201,1.35e-07,8;UBERON:0006553,1.35e-07,8;UBERON:0003074,1.35e-07,8;UBERON:0003060,1.35e-07,8;UBERON:0004876,1.58e-07,11;UBERON:0000412,2.48e-07,3;UBERON:0001992,2.48e-07,3;UBERON:0003886,3.61e-07,54;UBERON:0000920,7.78e-07,3;UBERON:0003887,7.87e-07,12;UBERON:0002553,9.13e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.00286877499121,6.73202281106035,26.9571060471156,2.86235987131057,5.61185142798825,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263504357079378,58.9405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859840221182376,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.348581828608555,1.34759371519982,0.252320850875628,0,1.56449532329816,36.0214925388016,6.90674606762403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0.271265023699736,0,0,0,0,0,0,2.0694614258501,0,0,0,0.587403472388222,0,0,0,0,0,0,0,0,0,0,0,0,0,2.96836132889982,0,0,0.0821271560138091,0,0,0,1.00253235151642,0,0,0,0.131124414959424,125.43349238826,69.6988800794954,197.656141832567,83.2993580523586,52.1425046730806,0,0.340187410553031,26.9894895127674,9.25363516141736,96.1859853280678,168.567764015231,117.243085600718,106.377729142877,106.788258002479,0,0,0,0,0,5.97637867556789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,3.79655309662471,0,0.511795582622668,0,0,0,0,0,0,2.22400729730648,0,1.26377536871694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.96664125748166,0,6.73885902670502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,2.67268212749375,0,0,0,233.191737022988,0,0.63337622438398,1.79323189425963,0,0,0,0,0,0,0,0,1.97286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54006525172403,0,0,0,0,1.27600463892768,2.28993983504656,3.73124343213044,0,0,0,0,0,0,0,0,262.270594208338,115.079129752199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.9555439390775,0,0,0,0,0,0,0,0,0,96.7672456501295,0,168.873625400082,0,26.2048211807012,59.4070672022902,0,0,0,0,0,0,1.35588444468319,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,248.63200652897,243.127016005716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97350799631566,0.92562821219883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554645257684261,1.55241007353459,0,0,0,0,0,0,0,0,0.467426619694449,0,0,0.754703705257725,0,0,0,0,0,14.6553025790606,1.34940933649081,56.0499274323296,0,0,24.5220179051515,0.150257608997218,3.04644169735036,10.9855097965259,0,73.8984632452321,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,61.2417229425193,0,0,0,0,0,0,0.655219697692825,43.5018048494083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6882797595648,57.6876496492067,0,0,0,0,0,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,1.1531308121143,0,0,0,0,0,0,3.9246546425257,0,0,0,79.245425977234,24.3653360822396,0.571812353413251,0,0,0,0,0,0,0,1.29068207646083,0,0,37.6814474669927,141.358937891679,95.5435667846105,69.7543425453526,189.259390601865,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,1.17785080268967,0.891139200981258,0.8453114551668,0,0,0,0,0,38.1126461452947,0,0,0,0,0,0,0,0.5290268405154,0,0,2.59575937274273,0,0,0,0,0,0,0,8.41143550222457,1.33982065078089,0,0,32.6247992308501,140.219950132143,0,0.124149428591716,58.7570959922414,418.734654312047,430.307495292049,0,0,0,2.07994395638761,4.65724499164419,0,0,1.9307228228694,0,0,6.23431365332619,15.0551585976823,6.65756774185513,0,0 | |||
|short_description=p1@PAX8 | |||
}} |
Latest revision as of 13:17, 16 September 2015
Short description: | p1@PAX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAX8_5end |
Coexpression cluster: | C4118_thyroid_clear_kidney_anaplastic_Renal_serous_endometrioid |
Association with transcript: | 0bp_to_ENST00000263335, ENST00000348715, ENST00000397647, ENST00000467778, NM_003466, NM_013952, NM_013953, NM_013992, uc002tjm.2, uc002tjn.2, uc010fku.1, uc010yxt.1, uc010yxu.1, uc010yxv.1_5end |
EntrezGene: | PAX8 |
HGNC: | 8622 |
UniProt: | Q06710 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 3.89e-26 | 17 |
kidney epithelial cell | 3.89e-26 | 17 |
kidney tubule cell | 2.35e-24 | 10 |
nephron tubule epithelial cell | 2.35e-24 | 10 |
epithelial cell of nephron | 4.97e-22 | 15 |
kidney cortical cell | 1.07e-15 | 12 |
renal cortical epithelial cell | 1.07e-15 | 12 |
oligodendrocyte | 7.84e-11 | 7 |
macroglial cell | 7.84e-11 | 7 |
astrocyte | 7.84e-11 | 7 |
oligodendrocyte precursor cell | 7.84e-11 | 7 |
epithelial cell of uterus | 8.16e-11 | 6 |
stromal cell of endometrium | 8.16e-11 | 6 |
brush border epithelial cell | 1.51e-08 | 3 |
kidney cortex tubule cell | 1.51e-08 | 3 |
epithelial cell of proximal tubule | 1.51e-08 | 3 |
astrocyte of the cerebellum | 1.51e-07 | 3 |
hair follicle dermal papilla cell | 2.48e-07 | 3 |
stem cell of epidermis | 2.48e-07 | 3 |
astrocyte of the cerebral cortex | 7.14e-07 | 3 |
chorionic membrane mesenchymal stem cell | 7.78e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 2.10e-19 | 27 |
reproductive organ cancer | 9.34e-18 | 29 |
female reproductive endometrioid cancer | 8.16e-11 | 6 |
ovarian cancer | 1.72e-09 | 14 |