FFCP PHASE1:Hg19::chr20:36793649..36793659,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:36793649..36793659,- to FFCP PHASE1:Hg19::chr20:36793649..36793659,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7052 | |EntrezGene=7052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11778 | |HGNC=11778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000474777_5end | |||
|cluster_id=chr20:36793649..36793659,- | |||
|coexpression_cluster_id=C454 | |||
|description=CAGE_peak_2_at_TGM2_5end | |||
|id=chr20:36793649..36793659,- | |||
|ontology_enrichment_celltype=CL:0000115!3.96e-17!35;CL:0000222!2.61e-16!119;CL:0002139!1.10e-15!24;CL:0002078!1.27e-15!44;CL:0000071!1.01e-12!18;CL:0002546!1.01e-12!18;CL:0000213!7.35e-11!57;CL:0000215!7.35e-11!57;CL:1000449!1.79e-10!16;CL:0000192!5.88e-10!42;CL:0000514!5.88e-10!42;CL:1000497!3.61e-09!18;CL:0002518!3.61e-09!18;CL:0002681!4.87e-09!13;CL:0002584!4.87e-09!13;CL:0000183!4.13e-08!59;CL:1000507!4.41e-08!12;CL:1000494!4.41e-08!12;CL:0000187!2.60e-07!54;CL:1000413!3.98e-07!9;CL:0000066!4.52e-07!254;CL:0000220!9.95e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.84e-22;24!CL:0000115;1.33e-20;36!CL:0000071;6.06e-18;18!CL:0002078;1.03e-14;45!CL:1000449;1.09e-13;15!CL:0002681;1.00e-11;12!CL:0002584;1.00e-11;12!CL:1000497;1.96e-11;17!CL:0002518;1.96e-11;17!CL:1000413;9.27e-10;9!CL:0000213;2.16e-09;58!CL:0000215;2.16e-09;58!CL:1000507;3.35e-09;10!CL:1000494;3.35e-09;10!CL:0000349;4.13e-09;19!CL:1000746;4.88e-08;7!CL:1000612;4.88e-08;7!CL:0000192;5.37e-08;43!CL:0002543;3.86e-07;6!CL:0002544;7.38e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.47e-24,36;CL:0002078,6.62e-23,45;CL:0002139,2.97e-22,24;CL:0000222,1.23e-20,121;CL:0000071,6.60e-18,18;CL:0002546,6.60e-18,18;CL:0000213,4.39e-14,58;CL:0000215,4.39e-14,58;CL:1000449,8.76e-14,15;CL:0002681,1.10e-11,12;CL:0002584,1.10e-11,12;CL:1000497,1.63e-11,17;CL:0002518,1.63e-11,17;CL:0000192,1.74e-10,43;CL:0000514,1.74e-10,43;CL:1000413,1.02e-09,9;CL:1000507,2.18e-09,10;CL:1000494,2.18e-09,10;CL:0000349,3.32e-09,19;CL:0002321,1.07e-08,250;CL:0000066,1.82e-08,253;CL:1000746,6.81e-08,7;CL:1000612,6.81e-08,7;CL:0000187,1.40e-07,55;CL:0002543,3.94e-07,6;CL:0002544,8.12e-07,6;CL:0000680,9.35e-07,58;CL:0000056,9.35e-07,58;CL:0000355,9.35e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;6.06e-18;18!CL:0000222;1.81e-08;121!CL:0000514;5.37e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!6.65e-33!118;UBERON:0002049!1.23e-27!79;UBERON:0007798!1.23e-27!79;UBERON:0000055!1.43e-22!69;UBERON:0000477!2.14e-22!286;UBERON:0004872!2.96e-21!84;UBERON:0000119!5.29e-21!312;UBERON:0001009!1.12e-20!113;UBERON:0000490!1.38e-20!138;UBERON:0000483!4.14e-20!309;UBERON:0001981!1.79e-19!60;UBERON:0007500!1.79e-19!60;UBERON:0004537!1.79e-19!60;UBERON:0006965!1.79e-19!60;UBERON:0004535!2.32e-19!110;UBERON:0004111!2.62e-19!241;UBERON:0005256!5.18e-18!143;UBERON:0000025!1.15e-16!194;UBERON:0002100!2.81e-15!216;UBERON:0000481!7.85e-15!347;UBERON:0003104!1.49e-13!238;UBERON:0009142!1.49e-13!238;UBERON:0000468!2.17e-13!659;UBERON:0001986!1.01e-12!18;UBERON:0004638!1.01e-12!18;UBERON:0004852!1.01e-12!18;UBERON:0000487!1.65e-12!22;UBERON:0000926!7.67e-12!448;UBERON:0004120!7.67e-12!448;UBERON:0006603!7.67e-12!448;UBERON:0000467!1.08e-11!625;UBERON:0000480!1.68e-11!626;UBERON:0000353!3.98e-11!17;UBERON:0001637!4.78e-11!42;UBERON:0003509!4.78e-11!42;UBERON:0004572!4.78e-11!42;UBERON:0003064!8.48e-11!37;UBERON:0006914!1.35e-10!25;UBERON:0004211!1.79e-10!16;UBERON:0001285!1.79e-10!16;UBERON:0007684!1.79e-10!16;UBERON:0003220!1.79e-10!16;UBERON:0004208!1.79e-10!16;UBERON:0006555!2.07e-10!17;UBERON:0005103!2.07e-10!17;UBERON:0000083!2.07e-10!17;UBERON:0009201!2.07e-10!17;UBERON:0004819!2.07e-10!17;UBERON:0006553!2.07e-10!17;UBERON:0003074!2.07e-10!17;UBERON:0003060!2.07e-10!17;UBERON:0000080!3.64e-10!18;UBERON:0002120!3.64e-10!18;UBERON:0004875!3.64e-10!18;UBERON:0005721!3.64e-10!18;UBERON:0005754!3.64e-10!18;UBERON:0007297!3.64e-10!18;UBERON:0003103!8.62e-10!69;UBERON:0001008!8.75e-10!45;UBERON:0000058!1.01e-09!26;UBERON:0006554!1.06e-09!44;UBERON:0002050!2.20e-09!605;UBERON:0005423!2.20e-09!605;UBERON:0004876!2.26e-09!20;UBERON:0000923!3.11e-09!604;UBERON:0005291!3.11e-09!604;UBERON:0006598!3.11e-09!604;UBERON:0002532!3.11e-09!604;UBERON:0001225!4.87e-09!13;UBERON:0008987!4.87e-09!13;UBERON:0003887!4.97e-09!21;UBERON:0005172!5.62e-09!55;UBERON:0005173!5.62e-09!55;UBERON:0005177!6.92e-09!107;UBERON:0009569!7.75e-09!113;UBERON:0000922!1.54e-08!612;UBERON:0002417!2.48e-08!61;UBERON:0000916!2.48e-08!61;UBERON:0005631!3.37e-08!14;UBERON:0000158!3.37e-08!14;UBERON:0004573!3.77e-08!33;UBERON:0004571!3.77e-08!33;UBERON:0009773!4.41e-08!12;UBERON:0001231!4.41e-08!12;UBERON:0004810!4.41e-08!12;UBERON:0003081!1.07e-07!216;UBERON:0000475!1.45e-07!365;UBERON:0001851!2.74e-07!16;UBERON:0000064!3.12e-07!219;UBERON:0003915!3.98e-07!9;UBERON:0004700!3.98e-07!9;UBERON:0001917!3.98e-07!9;UBERON:0003929!4.82e-07!54;UBERON:0000466!6.59e-07!126;UBERON:0000478!7.00e-07!24;UBERON:0001048!7.55e-07!168;UBERON:0002113!9.62e-07!27;UBERON:0003918!9.62e-07!27;UBERON:0005095!9.62e-07!27;UBERON:0007687!9.62e-07!27 | |||
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| ||
|short_description=p2@TGM2 | |||
}} | }} |
Latest revision as of 03:12, 16 September 2015
Short description: | p2@TGM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TGM2_5end |
Coexpression cluster: | C454_Placental_Amniotic_Smooth_Mesenchymal_Lens_Renal_bile |
Association with transcript: | 1bp_to_ENST00000474777_5end |
EntrezGene: | TGM2 |
HGNC: | 11778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.47e-24 | 36 |
meso-epithelial cell | 6.62e-23 | 45 |
endothelial cell of vascular tree | 2.97e-22 | 24 |
mesodermal cell | 1.23e-20 | 121 |
blood vessel endothelial cell | 6.60e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.60e-18 | 18 |
lining cell | 4.39e-14 | 58 |
barrier cell | 4.39e-14 | 58 |
epithelial cell of nephron | 8.76e-14 | 15 |
kidney cortical cell | 1.10e-11 | 12 |
renal cortical epithelial cell | 1.10e-11 | 12 |
kidney cell | 1.63e-11 | 17 |
kidney epithelial cell | 1.63e-11 | 17 |
smooth muscle cell | 1.74e-10 | 43 |
smooth muscle myoblast | 1.74e-10 | 43 |
endothelial cell of artery | 1.02e-09 | 9 |
kidney tubule cell | 2.18e-09 | 10 |
nephron tubule epithelial cell | 2.18e-09 | 10 |
extraembryonic cell | 3.32e-09 | 19 |
embryonic cell | 1.07e-08 | 250 |
epithelial cell | 1.82e-08 | 253 |
glomerular cell | 6.81e-08 | 7 |
kidney corpuscule cell | 6.81e-08 | 7 |
muscle cell | 1.40e-07 | 55 |
vein endothelial cell | 3.94e-07 | 6 |
aortic endothelial cell | 8.12e-07 | 6 |
muscle precursor cell | 9.35e-07 | 58 |
myoblast | 9.35e-07 | 58 |
multi-potent skeletal muscle stem cell | 9.35e-07 | 58 |