FFCP PHASE1:Hg19::chr2:113999199..113999214,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:113999199..113999214,+ | |||
|coexpression_cluster_id=C4118 | |||
|description=CAGE_peak_at_chr2:113999199..113999214,+ | |description=CAGE_peak_at_chr2:113999199..113999214,+ | ||
|id=chr2:113999199..113999214,+ | |id=chr2:113999199..113999214,+ | ||
|ontology_enrichment_celltype=CL:1000497!1.06e-29!18;CL:0002518!1.06e-29!18;CL:1000507!2.07e-24!12;CL:1000494!2.07e-24!12;CL:1000449!1.23e-22!16;CL:0002149!4.62e-20!6;CL:0002255!4.62e-20!6;CL:0002681!2.75e-17!13;CL:0002584!2.75e-17!13;CL:0000239!3.09e-15!3;CL:1000615!3.09e-15!3;CL:0002306!3.09e-15!3;CL:0000159!4.22e-11!2;CL:0000650!1.74e-07!3;CL:1000618!1.74e-07!3;CL:1001318!1.74e-07!3;CL:0002173!1.74e-07!3;CL:1000500!1.74e-07!3 | |ontology_enrichment_celltype=CL:1000497!1.06e-29!18;CL:0002518!1.06e-29!18;CL:1000507!2.07e-24!12;CL:1000494!2.07e-24!12;CL:1000449!1.23e-22!16;CL:0002149!4.62e-20!6;CL:0002255!4.62e-20!6;CL:0002681!2.75e-17!13;CL:0002584!2.75e-17!13;CL:0000239!3.09e-15!3;CL:1000615!3.09e-15!3;CL:0002306!3.09e-15!3;CL:0000159!4.22e-11!2;CL:0000650!1.74e-07!3;CL:1000618!1.74e-07!3;CL:1001318!1.74e-07!3;CL:0002173!1.74e-07!3;CL:1000500!1.74e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000159;1.92e-29;2!CL:0000650;4.54e-29;2!CL:1000500;4.54e-29;2!CL:1000618;4.54e-29;2!CL:1001318;4.54e-29;2!CL:0002173;4.54e-29;2!CL:0000313;8.02e-16;1!CL:0000319;1.92e-15;1!CL:0000669;4.54e-15;4!CL:1000507;2.61e-13;10!CL:1000494;2.61e-13;10!CL:0002681;3.41e-11;12!CL:0002584;3.41e-11;12!CL:0002149;2.29e-10;6!CL:0002255;2.29e-10;6!CL:1000449;4.55e-09;15!CL:1000746;5.15e-09;7!CL:1000612;5.15e-09;7!CL:1000497;4.58e-08;17!CL:0002518;4.58e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000159,2.22e-29,2;CL:0000650,1.43e-28,2;CL:1000500,1.43e-28,2;CL:1000618,1.43e-28,2;CL:1001318,1.43e-28,2;CL:0002173,1.43e-28,2;CL:0000313,8.63e-16,1;CL:0000319,2.06e-15,1;CL:0000669,8.02e-15,4;CL:1000507,4.07e-13,10;CL:1000494,4.07e-13,10;CL:0002681,4.93e-11,12;CL:0002584,4.93e-11,12;CL:0002149,1.65e-10,6;CL:0002255,1.65e-10,6;CL:1000449,6.08e-09,15;CL:1000746,7.11e-09,7;CL:1000612,7.11e-09,7;CL:1000497,5.92e-08,17;CL:0002518,5.92e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.59e-26;5 | |||
|ontology_enrichment_disease=DOID:120!9.82e-23!27;DOID:193!5.42e-21!29;DOID:3001!4.62e-20!6;DOID:299!2.92e-14!25;DOID:4468!8.78e-11!2 | |ontology_enrichment_disease=DOID:120!9.82e-23!27;DOID:193!5.42e-21!29;DOID:3001!4.62e-20!6;DOID:299!2.92e-14!25;DOID:4468!8.78e-11!2 | ||
|ontology_enrichment_disease_v019=DOID:2152;8.02e-16;1!DOID:3030;1.92e-15;1!DOID:299;3.02e-14;25!DOID:3001;2.29e-10;6!DOID:120;9.50e-09;27!DOID:4468;1.44e-08;2!DOID:193;3.68e-08;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,8.63e-16,1;DOID:3030,2.06e-15,1;DOID:299,2.52e-14,25;DOID:3001,1.65e-10,6;DOID:120,8.24e-09,27;DOID:4468,1.39e-08,2;DOID:193,3.22e-08,29 | |||
|ontology_enrichment_uberon=UBERON:0002113!5.60e-36!27;UBERON:0003918!5.60e-36!27;UBERON:0005095!5.60e-36!27;UBERON:0007687!5.60e-36!27;UBERON:0000489!7.97e-30!32;UBERON:0000080!1.40e-29!18;UBERON:0002120!1.40e-29!18;UBERON:0004875!1.40e-29!18;UBERON:0005721!1.40e-29!18;UBERON:0005754!1.40e-29!18;UBERON:0007297!1.40e-29!18;UBERON:0004876!2.12e-26!20;UBERON:0006555!4.80e-26!17;UBERON:0005103!4.80e-26!17;UBERON:0000083!4.80e-26!17;UBERON:0009201!4.80e-26!17;UBERON:0004819!4.80e-26!17;UBERON:0006553!4.80e-26!17;UBERON:0003074!4.80e-26!17;UBERON:0003060!4.80e-26!17;UBERON:0003887!4.89e-25!21;UBERON:0009773!2.07e-24!12;UBERON:0001231!2.07e-24!12;UBERON:0004810!2.07e-24!12;UBERON:0004211!1.23e-22!16;UBERON:0001285!1.23e-22!16;UBERON:0007684!1.23e-22!16;UBERON:0003220!1.23e-22!16;UBERON:0004208!1.23e-22!16;UBERON:0006554!9.11e-21!44;UBERON:0001008!3.13e-20!45;UBERON:0000058!8.51e-20!26;UBERON:0003886!1.99e-17!63;UBERON:0001225!2.75e-17!13;UBERON:0008987!2.75e-17!13;UBERON:0002046!2.65e-16!5;UBERON:0004117!2.65e-16!5;UBERON:0007689!2.65e-16!5;UBERON:0007123!2.65e-16!5;UBERON:0003091!2.65e-16!5;UBERON:0005172!6.07e-16!55;UBERON:0005173!6.07e-16!55;UBERON:0003133!8.68e-16!48;UBERON:0002553!2.66e-15!70;UBERON:0006853!3.09e-15!3;UBERON:0007685!3.09e-15!3;UBERON:0004134!3.09e-15!3;UBERON:0002417!4.76e-14!61;UBERON:0000916!4.76e-14!61;UBERON:0001851!7.23e-14!16;UBERON:0003064!2.94e-13!37;UBERON:0003134!4.38e-13!37;UBERON:0000474!4.38e-13!37;UBERON:0000353!5.38e-13!17;UBERON:0005156!2.75e-12!59;UBERON:0000990!2.75e-12!59;UBERON:0003103!4.86e-12!69;UBERON:0003100!1.34e-11!41;UBERON:0004175!8.49e-11!25;UBERON:0000991!1.00e-09!21;UBERON:0009196!1.00e-09!21;UBERON:0009117!1.00e-09!21;UBERON:0005564!1.00e-09!21;UBERON:0004176!3.04e-09!22;UBERON:0000464!4.37e-09!104;UBERON:0000992!1.24e-08!13;UBERON:0000995!1.35e-07!21;UBERON:0003567!1.74e-07!3;UBERON:0003838!1.74e-07!3;UBERON:0005169!1.74e-07!3;UBERON:0002321!1.74e-07!3;UBERON:0005215!1.74e-07!3;UBERON:0002303!1.74e-07!3;UBERON:0002319!1.74e-07!3;UBERON:0009722!1.96e-07!11;UBERON:0007690!1.96e-07!11;UBERON:0005795!3.20e-07!22;UBERON:0003975!3.20e-07!22;UBERON:0006947!5.72e-07!3;UBERON:0004054!5.72e-07!3;UBERON:0000466!6.99e-07!126 | |ontology_enrichment_uberon=UBERON:0002113!5.60e-36!27;UBERON:0003918!5.60e-36!27;UBERON:0005095!5.60e-36!27;UBERON:0007687!5.60e-36!27;UBERON:0000489!7.97e-30!32;UBERON:0000080!1.40e-29!18;UBERON:0002120!1.40e-29!18;UBERON:0004875!1.40e-29!18;UBERON:0005721!1.40e-29!18;UBERON:0005754!1.40e-29!18;UBERON:0007297!1.40e-29!18;UBERON:0004876!2.12e-26!20;UBERON:0006555!4.80e-26!17;UBERON:0005103!4.80e-26!17;UBERON:0000083!4.80e-26!17;UBERON:0009201!4.80e-26!17;UBERON:0004819!4.80e-26!17;UBERON:0006553!4.80e-26!17;UBERON:0003074!4.80e-26!17;UBERON:0003060!4.80e-26!17;UBERON:0003887!4.89e-25!21;UBERON:0009773!2.07e-24!12;UBERON:0001231!2.07e-24!12;UBERON:0004810!2.07e-24!12;UBERON:0004211!1.23e-22!16;UBERON:0001285!1.23e-22!16;UBERON:0007684!1.23e-22!16;UBERON:0003220!1.23e-22!16;UBERON:0004208!1.23e-22!16;UBERON:0006554!9.11e-21!44;UBERON:0001008!3.13e-20!45;UBERON:0000058!8.51e-20!26;UBERON:0003886!1.99e-17!63;UBERON:0001225!2.75e-17!13;UBERON:0008987!2.75e-17!13;UBERON:0002046!2.65e-16!5;UBERON:0004117!2.65e-16!5;UBERON:0007689!2.65e-16!5;UBERON:0007123!2.65e-16!5;UBERON:0003091!2.65e-16!5;UBERON:0005172!6.07e-16!55;UBERON:0005173!6.07e-16!55;UBERON:0003133!8.68e-16!48;UBERON:0002553!2.66e-15!70;UBERON:0006853!3.09e-15!3;UBERON:0007685!3.09e-15!3;UBERON:0004134!3.09e-15!3;UBERON:0002417!4.76e-14!61;UBERON:0000916!4.76e-14!61;UBERON:0001851!7.23e-14!16;UBERON:0003064!2.94e-13!37;UBERON:0003134!4.38e-13!37;UBERON:0000474!4.38e-13!37;UBERON:0000353!5.38e-13!17;UBERON:0005156!2.75e-12!59;UBERON:0000990!2.75e-12!59;UBERON:0003103!4.86e-12!69;UBERON:0003100!1.34e-11!41;UBERON:0004175!8.49e-11!25;UBERON:0000991!1.00e-09!21;UBERON:0009196!1.00e-09!21;UBERON:0009117!1.00e-09!21;UBERON:0005564!1.00e-09!21;UBERON:0004176!3.04e-09!22;UBERON:0000464!4.37e-09!104;UBERON:0000992!1.24e-08!13;UBERON:0000995!1.35e-07!21;UBERON:0003567!1.74e-07!3;UBERON:0003838!1.74e-07!3;UBERON:0005169!1.74e-07!3;UBERON:0002321!1.74e-07!3;UBERON:0005215!1.74e-07!3;UBERON:0002303!1.74e-07!3;UBERON:0002319!1.74e-07!3;UBERON:0009722!1.96e-07!11;UBERON:0007690!1.96e-07!11;UBERON:0005795!3.20e-07!22;UBERON:0003975!3.20e-07!22;UBERON:0006947!5.72e-07!3;UBERON:0004054!5.72e-07!3;UBERON:0000466!6.99e-07!126 | ||
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|ontology_enrichment_uberon_v019_2=UBERON:0003567,1.43e-28,2;UBERON:0003838,1.43e-28,2;UBERON:0003586,1.43e-28,2;UBERON:0005169,1.43e-28,2;UBERON:0002321,1.43e-28,2;UBERON:0005215,1.43e-28,2;UBERON:0002303,1.43e-28,2;UBERON:0002319,1.43e-28,2;UBERON:0002046,1.18e-26,5;UBERON:0004117,1.18e-26,5;UBERON:0007689,1.18e-26,5;UBERON:0007123,1.18e-26,5;UBERON:0003091,1.18e-26,5;UBERON:0004911,8.63e-16,1;UBERON:0003891,8.02e-15,4;UBERON:0004810,4.07e-13,10;UBERON:0009722,1.75e-12,11;UBERON:0007690,1.75e-12,11;UBERON:0001225,4.93e-11,12;UBERON:0008987,4.93e-11,12;UBERON:0001851,6.08e-09,15;UBERON:0004211,6.08e-09,15;UBERON:0009773,6.08e-09,15;UBERON:0000353,6.08e-09,15;UBERON:0001231,6.08e-09,15;UBERON:0001285,6.08e-09,15;UBERON:0007684,6.08e-09,15;UBERON:0004208,6.08e-09,15;UBERON:0002113,6.97e-09,26;UBERON:0003918,6.97e-09,26;UBERON:0011143,6.97e-09,26;UBERON:0005095,6.97e-09,26;UBERON:0007687,6.97e-09,26;UBERON:0010532,7.11e-09,7;UBERON:0000074,7.11e-09,7;UBERON:0001229,7.11e-09,7;UBERON:0001230,7.11e-09,7;UBERON:0003220,7.11e-09,7;UBERON:0005749,7.11e-09,7;UBERON:0004199,7.11e-09,7;UBERON:0004209,7.11e-09,7;UBERON:0004198,7.11e-09,7;UBERON:0004909,1.50e-08,2;UBERON:0006555,2.04e-08,16;UBERON:0004819,2.04e-08,16;UBERON:0000341,2.48e-08,2;UBERON:0005103,7.10e-08,8;UBERON:0000083,7.10e-08,8;UBERON:0009201,7.10e-08,8;UBERON:0006553,7.10e-08,8;UBERON:0003074,7.10e-08,8;UBERON:0003060,7.10e-08,8;UBERON:0008814,7.66e-08,18;UBERON:0000489,1.73e-07,31;UBERON:0000080,4.28e-07,9;UBERON:0002120,4.28e-07,9;UBERON:0004875,4.28e-07,9;UBERON:0005721,4.28e-07,9;UBERON:0005754,4.28e-07,9;UBERON:0007297,4.28e-07,9 | |||
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|short_description=p@chr2:113999199..113999214,+ | |short_description=p@chr2:113999199..113999214,+ | ||
}} | }} |
Latest revision as of 23:37, 28 July 2015
Short description: | p@chr2:113999199..113999214, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:113999199..113999214, + |
Coexpression cluster: | C4118_thyroid_clear_kidney_anaplastic_Renal_serous_endometrioid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
seromucus secreting cell | 2.22e-29 | 2 |
mesangial cell | 1.43e-28 | 2 |
kidney interstitial cell | 1.43e-28 | 2 |
juxtaglomerular complex cell | 1.43e-28 | 2 |
renal interstitial pericyte | 1.43e-28 | 2 |
extraglomerular mesangial cell | 1.43e-28 | 2 |
serous secreting cell | 8.63e-16 | 1 |
mucus secreting cell | 2.06e-15 | 1 |
pericyte cell | 8.02e-15 | 4 |
kidney tubule cell | 4.07e-13 | 10 |
nephron tubule epithelial cell | 4.07e-13 | 10 |
kidney cortical cell | 4.93e-11 | 12 |
renal cortical epithelial cell | 4.93e-11 | 12 |
epithelial cell of uterus | 1.65e-10 | 6 |
stromal cell of endometrium | 1.65e-10 | 6 |
epithelial cell of nephron | 6.08e-09 | 15 |
glomerular cell | 7.11e-09 | 7 |
kidney corpuscule cell | 7.11e-09 | 7 |
kidney cell | 5.92e-08 | 17 |
kidney epithelial cell | 5.92e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 8.63e-16 | 1 |
mucinous adenocarcinoma | 2.06e-15 | 1 |
adenocarcinoma | 2.52e-14 | 25 |
female reproductive endometrioid cancer | 1.65e-10 | 6 |
female reproductive organ cancer | 8.24e-09 | 27 |
clear cell adenocarcinoma | 1.39e-08 | 2 |
reproductive organ cancer | 3.22e-08 | 29 |