Personal tools

FF:11412-118E8: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008111
|DRA_sample_Accession=CAGE@DRS008111
|accession_numbers=CAGE;DRX008219;DRR009091;DRZ000516;DRZ001901
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000048
|is_a=EFO:0002091;;FF:0000048
|is_obsolete=
|is_obsolete=
|library_id=CNhs12022
|library_ids=CNhs12022
|library_ids=CNhs12022
|name=Endothelial Cells - Aortic, donor3
|name=Endothelial Cells - Aortic, donor3
Line 87: Line 89:
|top_motifs=SOX{8,9,10}:1.69584190846;RXR{A,B,G}:1.51965866473;TLX1..3_NFIC{dimer}:1.29404413761;AR:1.28827320392;PAX6:1.17159255512;TFAP2{A,C}:1.16010954708;POU3F1..4:1.15335240253;SOX2:1.14455126399;NFATC1..3:1.13667887766;GATA6:1.10067122665;LEF1_TCF7_TCF7L1,2:0.954577749485;ZNF148:0.886238460518;bHLH_family:0.874179528381;ADNP_IRX_SIX_ZHX:0.848579004643;TFAP4:0.793476448176;STAT5{A,B}:0.712784808157;SOX17:0.672030260447;TP53:0.663570412708;ONECUT1,2:0.656030296983;PAX8:0.64187265427;ETS1,2:0.632781222076;FOX{I1,J2}:0.623587875715;RORA:0.621377534861;ARID5B:0.608118241227;NANOG:0.604421793838;LHX3,4:0.598778536372;SOX5:0.589602495876;HIC1:0.585227414494;IKZF1:0.563703119149;PAX1,9:0.54615818905;CRX:0.528313592348;GLI1..3:0.527075456108;MTE{core}:0.521542136732;NR3C1:0.483315698634;TFAP2B:0.472982452943;CDC5L:0.458499638099;GFI1B:0.454682197656;PPARG:0.426835686553;HOX{A5,B5}:0.422833390569;ZFP161:0.414341293843;SPIB:0.414201044917;SP1:0.393223350106;GTF2A1,2:0.351353863823;BACH2:0.349706694451;HES1:0.336421768256;TEAD1:0.325951261733;NFE2:0.291844617956;TFDP1:0.288320284048;ALX1:0.27062269721;NFE2L1:0.261264642138;REST:0.258998094092;ELF1,2,4:0.25341148201;XCPE1{core}:0.230887711779;SMAD1..7,9:0.226693216516;NFE2L2:0.221287682348;FOS_FOS{B,L1}_JUN{B,D}:0.2028479176;EGR1..3:0.167495012005;PAX5:0.163865205471;HAND1,2:0.159652324737;SPZ1:0.156222039908;FOSL2:0.146041524047;MED-1{core}:0.135631318659;POU6F1:0.131460189379;PITX1..3:0.118949648924;HBP1_HMGB_SSRP1_UBTF:0.105021035152;ZNF238:0.0909979019978;POU1F1:0.0838666881931;GCM1,2:0.0653741583523;SRF:0.0545047758544;NHLH1,2:0.0516237425985;EBF1:0.0332893115598;GTF2I:0.0303577652484;TBP:0.0232716268828;IKZF2:0.019993277055;MYOD1:0.0152884199478;HNF4A_NR2F1,2:0.00991536677889;ATF6:0.00502226723262;TLX2:0.00496538460717;FOXA2:0.00198862218369;FOXL1:-0.00160455912676;MAZ:-0.0131023210396;ZBTB6:-0.0141597343752;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0161144280125;TEF:-0.0205613072589;SPI1:-0.0494582706549;NKX2-2,8:-0.0655123825574;MTF1:-0.07474107651;LMO2:-0.0811246709937;STAT2,4,6:-0.0823773015207;ZNF423:-0.0903332871872;NFIX:-0.0971188201028;GZF1:-0.105206029542;PAX2:-0.107075946161;MYB:-0.109303105413;E2F1..5:-0.12036535209;ZIC1..3:-0.144045751372;HOXA9_MEIS1:-0.154524800585;UFEwm:-0.186914047064;HNF1A:-0.188403489695;GATA4:-0.188620004644;T:-0.191274716203;JUN:-0.198055046661;ZNF143:-0.200938032184;NR5A1,2:-0.230103916853;PRRX1,2:-0.237858392984;ESRRA:-0.246118361041;GFI1:-0.246227491192;EN1,2:-0.248762727475;CUX2:-0.251154852624;OCT4_SOX2{dimer}:-0.252795868083;HLF:-0.253596764215;MYFfamily:-0.264267741046;PAX3,7:-0.268409245484;PBX1:-0.27133652365;PATZ1:-0.27604415631;NRF1:-0.293164798873;YY1:-0.307078918309;TAL1_TCF{3,4,12}:-0.308943994314;MZF1:-0.309788741532;POU2F1..3:-0.325378461767;TGIF1:-0.326071770651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.333973994161;HMGA1,2:-0.349576426789;NFKB1_REL_RELA:-0.357723957852;FOX{F1,F2,J1}:-0.364981179524;HOX{A6,A7,B6,B7}:-0.367471063233;FOXQ1:-0.376028059697;MEF2{A,B,C,D}:-0.387489653846;BREu{core}:-0.394649898757;TFCP2:-0.401576578978;RFX1:-0.430135468983;FOXD3:-0.436343943904;ZEB1:-0.444732561057;NKX3-2:-0.445085802811;NANOG{mouse}:-0.445737812821;PRDM1:-0.462937955323;PAX4:-0.466273220559;SREBF1,2:-0.4707088085;FOX{D1,D2}:-0.474861993724;NFY{A,B,C}:-0.491813090224;KLF4:-0.510700323969;CEBPA,B_DDIT3:-0.523224901769;AIRE:-0.53026103971;DMAP1_NCOR{1,2}_SMARC:-0.532029431799;HMX1:-0.536811236457;RUNX1..3:-0.568623325631;SNAI1..3:-0.598273323847;VSX1,2:-0.630124017759;NFIL3:-0.638300410911;CREB1:-0.650494783369;RBPJ:-0.672363732743;RREB1:-0.67341470547;NKX2-3_NKX2-5:-0.690097655483;AHR_ARNT_ARNT2:-0.691253465342;IRF7:-0.692091282759;IRF1,2:-0.714590643177;FOXM1:-0.720282679463;RFX2..5_RFXANK_RFXAP:-0.731159756166;EP300:-0.735241557875;MAFB:-0.739621168554;ZNF384:-0.74929929933;FOXO1,3,4:-0.765962882651;FOXN1:-0.773619714727;POU5F1:-0.783768774942;BPTF:-0.792751333963;ZBTB16:-0.796425339227;FOXP3:-0.80960779524;TBX4,5:-0.811398169847;ESR1:-0.81356505175;ATF2:-0.816029577402;HIF1A:-0.822136965505;ELK1,4_GABP{A,B1}:-0.852291478367;NR1H4:-0.867824361102;EVI1:-0.877059060726;MYBL2:-0.909398667182;TOPORS:-0.933504726197;ATF4:-0.983722098421;STAT1,3:-0.993342354793;RXRA_VDR{dimer}:-1.01268970605;XBP1:-1.01360311547;ATF5_CREB3:-1.06353385991;DBP:-1.06368804869;ALX4:-1.10498372182;NR6A1:-1.13216709882;PDX1:-1.17407212082;HSF1,2:-1.18915066935;HOX{A4,D4}:-1.22213179994;FOXP1:-1.30529060015;CDX1,2,4:-1.38080236036;NKX2-1,4:-1.48227122745;NKX6-1,2:-1.63538678086;NKX3-1:-2.06889818297
|top_motifs=SOX{8,9,10}:1.69584190846;RXR{A,B,G}:1.51965866473;TLX1..3_NFIC{dimer}:1.29404413761;AR:1.28827320392;PAX6:1.17159255512;TFAP2{A,C}:1.16010954708;POU3F1..4:1.15335240253;SOX2:1.14455126399;NFATC1..3:1.13667887766;GATA6:1.10067122665;LEF1_TCF7_TCF7L1,2:0.954577749485;ZNF148:0.886238460518;bHLH_family:0.874179528381;ADNP_IRX_SIX_ZHX:0.848579004643;TFAP4:0.793476448176;STAT5{A,B}:0.712784808157;SOX17:0.672030260447;TP53:0.663570412708;ONECUT1,2:0.656030296983;PAX8:0.64187265427;ETS1,2:0.632781222076;FOX{I1,J2}:0.623587875715;RORA:0.621377534861;ARID5B:0.608118241227;NANOG:0.604421793838;LHX3,4:0.598778536372;SOX5:0.589602495876;HIC1:0.585227414494;IKZF1:0.563703119149;PAX1,9:0.54615818905;CRX:0.528313592348;GLI1..3:0.527075456108;MTE{core}:0.521542136732;NR3C1:0.483315698634;TFAP2B:0.472982452943;CDC5L:0.458499638099;GFI1B:0.454682197656;PPARG:0.426835686553;HOX{A5,B5}:0.422833390569;ZFP161:0.414341293843;SPIB:0.414201044917;SP1:0.393223350106;GTF2A1,2:0.351353863823;BACH2:0.349706694451;HES1:0.336421768256;TEAD1:0.325951261733;NFE2:0.291844617956;TFDP1:0.288320284048;ALX1:0.27062269721;NFE2L1:0.261264642138;REST:0.258998094092;ELF1,2,4:0.25341148201;XCPE1{core}:0.230887711779;SMAD1..7,9:0.226693216516;NFE2L2:0.221287682348;FOS_FOS{B,L1}_JUN{B,D}:0.2028479176;EGR1..3:0.167495012005;PAX5:0.163865205471;HAND1,2:0.159652324737;SPZ1:0.156222039908;FOSL2:0.146041524047;MED-1{core}:0.135631318659;POU6F1:0.131460189379;PITX1..3:0.118949648924;HBP1_HMGB_SSRP1_UBTF:0.105021035152;ZNF238:0.0909979019978;POU1F1:0.0838666881931;GCM1,2:0.0653741583523;SRF:0.0545047758544;NHLH1,2:0.0516237425985;EBF1:0.0332893115598;GTF2I:0.0303577652484;TBP:0.0232716268828;IKZF2:0.019993277055;MYOD1:0.0152884199478;HNF4A_NR2F1,2:0.00991536677889;ATF6:0.00502226723262;TLX2:0.00496538460717;FOXA2:0.00198862218369;FOXL1:-0.00160455912676;MAZ:-0.0131023210396;ZBTB6:-0.0141597343752;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0161144280125;TEF:-0.0205613072589;SPI1:-0.0494582706549;NKX2-2,8:-0.0655123825574;MTF1:-0.07474107651;LMO2:-0.0811246709937;STAT2,4,6:-0.0823773015207;ZNF423:-0.0903332871872;NFIX:-0.0971188201028;GZF1:-0.105206029542;PAX2:-0.107075946161;MYB:-0.109303105413;E2F1..5:-0.12036535209;ZIC1..3:-0.144045751372;HOXA9_MEIS1:-0.154524800585;UFEwm:-0.186914047064;HNF1A:-0.188403489695;GATA4:-0.188620004644;T:-0.191274716203;JUN:-0.198055046661;ZNF143:-0.200938032184;NR5A1,2:-0.230103916853;PRRX1,2:-0.237858392984;ESRRA:-0.246118361041;GFI1:-0.246227491192;EN1,2:-0.248762727475;CUX2:-0.251154852624;OCT4_SOX2{dimer}:-0.252795868083;HLF:-0.253596764215;MYFfamily:-0.264267741046;PAX3,7:-0.268409245484;PBX1:-0.27133652365;PATZ1:-0.27604415631;NRF1:-0.293164798873;YY1:-0.307078918309;TAL1_TCF{3,4,12}:-0.308943994314;MZF1:-0.309788741532;POU2F1..3:-0.325378461767;TGIF1:-0.326071770651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.333973994161;HMGA1,2:-0.349576426789;NFKB1_REL_RELA:-0.357723957852;FOX{F1,F2,J1}:-0.364981179524;HOX{A6,A7,B6,B7}:-0.367471063233;FOXQ1:-0.376028059697;MEF2{A,B,C,D}:-0.387489653846;BREu{core}:-0.394649898757;TFCP2:-0.401576578978;RFX1:-0.430135468983;FOXD3:-0.436343943904;ZEB1:-0.444732561057;NKX3-2:-0.445085802811;NANOG{mouse}:-0.445737812821;PRDM1:-0.462937955323;PAX4:-0.466273220559;SREBF1,2:-0.4707088085;FOX{D1,D2}:-0.474861993724;NFY{A,B,C}:-0.491813090224;KLF4:-0.510700323969;CEBPA,B_DDIT3:-0.523224901769;AIRE:-0.53026103971;DMAP1_NCOR{1,2}_SMARC:-0.532029431799;HMX1:-0.536811236457;RUNX1..3:-0.568623325631;SNAI1..3:-0.598273323847;VSX1,2:-0.630124017759;NFIL3:-0.638300410911;CREB1:-0.650494783369;RBPJ:-0.672363732743;RREB1:-0.67341470547;NKX2-3_NKX2-5:-0.690097655483;AHR_ARNT_ARNT2:-0.691253465342;IRF7:-0.692091282759;IRF1,2:-0.714590643177;FOXM1:-0.720282679463;RFX2..5_RFXANK_RFXAP:-0.731159756166;EP300:-0.735241557875;MAFB:-0.739621168554;ZNF384:-0.74929929933;FOXO1,3,4:-0.765962882651;FOXN1:-0.773619714727;POU5F1:-0.783768774942;BPTF:-0.792751333963;ZBTB16:-0.796425339227;FOXP3:-0.80960779524;TBX4,5:-0.811398169847;ESR1:-0.81356505175;ATF2:-0.816029577402;HIF1A:-0.822136965505;ELK1,4_GABP{A,B1}:-0.852291478367;NR1H4:-0.867824361102;EVI1:-0.877059060726;MYBL2:-0.909398667182;TOPORS:-0.933504726197;ATF4:-0.983722098421;STAT1,3:-0.993342354793;RXRA_VDR{dimer}:-1.01268970605;XBP1:-1.01360311547;ATF5_CREB3:-1.06353385991;DBP:-1.06368804869;ALX4:-1.10498372182;NR6A1:-1.13216709882;PDX1:-1.17407212082;HSF1,2:-1.18915066935;HOX{A4,D4}:-1.22213179994;FOXP1:-1.30529060015;CDX1,2,4:-1.38080236036;NKX2-1,4:-1.48227122745;NKX6-1,2:-1.63538678086;NKX3-1:-2.06889818297
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008111
|accession_numbers=DRX008219;DRR009091;DRZ000516;DRZ001901;CAGE
|library_id=CNhs12022
}}
}}

Revision as of 19:49, 17 October 2013


Name:Endothelial Cells - Aortic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12022
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueaorta
dev stage21 years old adult
sexmale
age21
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1487
catalog numberCA304-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008111
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12022 CAGE DRX008219 DRR009091
Accession ID Hg19

Library idBAMCTSS
CNhs12022 DRZ000516 DRZ001901
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0658
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.099
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.5
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.214
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.553
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.572
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.253
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.16
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.195
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.583
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.329
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12022

Jaspar motifP-value
MA0002.20.141
MA0003.10.382
MA0004.10.445
MA0006.10.0616
MA0007.10.0715
MA0009.10.357
MA0014.10.905
MA0017.10.935
MA0018.22.07592e-5
MA0019.10.148
MA0024.10.249
MA0025.10.303
MA0027.10.582
MA0028.10.0028
MA0029.10.16
MA0030.10.975
MA0031.10.645
MA0035.20.00107
MA0038.10.738
MA0039.20.421
MA0040.10.157
MA0041.10.211
MA0042.10.401
MA0043.14.99777e-6
MA0046.10.298
MA0047.20.323
MA0048.10.96
MA0050.12.20931e-4
MA0051.10.211
MA0052.10.17
MA0055.10.744
MA0057.10.392
MA0058.10.885
MA0059.10.902
MA0060.10.669
MA0061.10.0928
MA0062.25.50018e-4
MA0065.20.368
MA0066.10.473
MA0067.10.0566
MA0068.10.313
MA0069.10.183
MA0070.10.681
MA0071.10.911
MA0072.10.885
MA0073.10.704
MA0074.10.815
MA0076.16.62061e-5
MA0077.14.68601e-7
MA0078.10.011
MA0079.20.047
MA0080.20.0405
MA0081.10.229
MA0083.10.3
MA0084.10.247
MA0087.10.207
MA0088.10.778
MA0090.10.116
MA0091.10.678
MA0092.10.383
MA0093.10.524
MA0099.28.7829e-15
MA0100.10.285
MA0101.10.595
MA0102.20.0105
MA0103.10.0596
MA0104.20.182
MA0105.10.0796
MA0106.10.0107
MA0107.10.549
MA0108.20.483
MA0111.10.45
MA0112.20.162
MA0113.10.234
MA0114.10.0779
MA0115.10.518
MA0116.10.0619
MA0117.10.255
MA0119.10.0182
MA0122.10.0978
MA0124.10.684
MA0125.10.858
MA0131.10.364
MA0135.10.689
MA0136.10.359
MA0137.20.112
MA0138.20.552
MA0139.10.985
MA0140.19.26589e-4
MA0141.10.423
MA0142.10.0412
MA0143.10.238
MA0144.10.776
MA0145.10.153
MA0146.10.288
MA0147.10.553
MA0148.10.0792
MA0149.10.0195
MA0150.10.12
MA0152.10.546
MA0153.10.896
MA0154.10.473
MA0155.10.167
MA0156.10.305
MA0157.10.676
MA0159.10.861
MA0160.10.482
MA0162.10.168
MA0163.17.65738e-4
MA0164.10.428
MA0258.10.358
MA0259.10.212



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12022

Novel motifP-value
10.503
100.0223
1000.521
1010.171
1020.447
1030.865
1040.851
1050.447
1060.102
1070.018
1080.336
1090.525
110.295
1100.25
1110.851
1120.677
1130.384
1140.297
1150.575
1160.948
1170.133
1180.97
1190.423
120.667
1200.189
1210.25
1220.426
1230.0254
1240.103
1250.631
1260.976
1270.93
1280.228
1290.944
130.365
1300.699
1310.761
1320.828
1330.906
1340.983
1350.125
1360.426
1370.135
1380.52
1390.265
140.829
1400.798
1410.33
1420.922
1430.022
1440.169
1450.113
1460.0269
1470.0843
1480.257
1490.137
150.373
1500.241
1510.875
1520.0112
1530.0833
1540.359
1550.591
1560.239
1570.512
1580.128
1590.886
160.98
1600.082
1610.235
1620.911
1630.655
1640.949
1650.555
1660.82
1670.248
1680.159
1690.386
170.534
180.777
190.631
20.668
200.607
210.489
220.431
230.32
240.395
250.551
260.699
270.396
280.0837
290.419
30.599
300.615
310.953
320.137
330.463
340.148
350.451
360.473
370.891
380.407
390.521
40.777
400.136
410.102
420.752
430.783
440.333
450.109
460.517
470.684
480.135
490.734
50.903
500.938
510.917
520.954
530.243
540.996
550.523
560.67
570.205
580.135
590.22
60.127
600.778
610.65
620.685
630.605
640.991
650.271
660.19
670.799
680.227
690.132
70.711
700.923
710.177
720.269
730.00165
740.0832
750.454
760.319
770.69
780.715
790.795
80.0172
800.242
810.614
820.946
830.945
840.266
850.582
860.98
870.1
880.645
890.939
90.395
900.285
910.321
920.395
930.72
940.491
950.25
960.383
970.355
980.294
990.0164



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12022


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11412-118E8&oldid=3079004"