Personal tools

FF:10553-107I4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 69: Line 69:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.0367552771689e-259!GO:0043226;organelle;2.67220812384643e-208!GO:0043229;intracellular organelle;1.23409302238831e-207!GO:0043231;intracellular membrane-bound organelle;1.46863581538342e-185!GO:0043227;membrane-bound organelle;1.92244119566195e-185!GO:0005737;cytoplasm;1.91841188862047e-175!GO:0044422;organelle part;1.74976193610801e-145!GO:0044446;intracellular organelle part;5.32831514193341e-144!GO:0044444;cytoplasmic part;6.97435778346528e-113!GO:0032991;macromolecular complex;5.42377239352619e-95!GO:0044238;primary metabolic process;2.39952100281484e-86!GO:0044237;cellular metabolic process;9.6904999220642e-86!GO:0005634;nucleus;4.24869189976458e-83!GO:0043170;macromolecule metabolic process;5.18179423340848e-80!GO:0030529;ribonucleoprotein complex;3.16397218385147e-75!GO:0005515;protein binding;1.85147928446182e-71!GO:0044428;nuclear part;4.0178289955399e-69!GO:0003723;RNA binding;8.22080854950897e-65!GO:0043233;organelle lumen;2.43183386180271e-64!GO:0031974;membrane-enclosed lumen;2.43183386180271e-64!GO:0005739;mitochondrion;4.55962698491899e-58!GO:0043228;non-membrane-bound organelle;3.33386359100247e-51!GO:0043232;intracellular non-membrane-bound organelle;3.33386359100247e-51!GO:0043234;protein complex;9.04861055755733e-50!GO:0043283;biopolymer metabolic process;3.83926525732469e-49!GO:0005840;ribosome;6.36145541406507e-47!GO:0016043;cellular component organization and biogenesis;9.65740413335527e-47!GO:0019538;protein metabolic process;1.34669854439755e-45!GO:0006412;translation;4.0905638689437e-44!GO:0031090;organelle membrane;1.2658004742373e-43!GO:0010467;gene expression;1.56129123382771e-43!GO:0006396;RNA processing;4.41794103698022e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.71110137887782e-41!GO:0003735;structural constituent of ribosome;2.29330767238274e-41!GO:0033036;macromolecule localization;3.75950762681993e-41!GO:0044267;cellular protein metabolic process;7.22042352627924e-41!GO:0031981;nuclear lumen;4.15175027515817e-40!GO:0015031;protein transport;8.68754559511583e-40!GO:0044260;cellular macromolecule metabolic process;1.00010670866724e-39!GO:0044429;mitochondrial part;8.86394911879802e-39!GO:0005829;cytosol;8.86394911879802e-39!GO:0008104;protein localization;2.22317861496269e-37!GO:0045184;establishment of protein localization;1.17978402875716e-36!GO:0031967;organelle envelope;7.29413136322714e-36!GO:0033279;ribosomal subunit;8.50879780049168e-36!GO:0031975;envelope;1.28570565531729e-35!GO:0016071;mRNA metabolic process;5.45389927104342e-35!GO:0044249;cellular biosynthetic process;1.07346525995542e-34!GO:0009058;biosynthetic process;1.88409414642802e-33!GO:0046907;intracellular transport;2.81667905497927e-32!GO:0065003;macromolecular complex assembly;6.37212405169112e-32!GO:0006996;organelle organization and biogenesis;1.11549148579923e-31!GO:0008380;RNA splicing;2.92870044629962e-31!GO:0006259;DNA metabolic process;4.5161605330057e-31!GO:0009059;macromolecule biosynthetic process;2.35313034473895e-30!GO:0006397;mRNA processing;2.39004654736953e-30!GO:0022607;cellular component assembly;1.16720301590126e-29!GO:0006886;intracellular protein transport;1.91499363576248e-26!GO:0005654;nucleoplasm;2.38197698339687e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34668128785288e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.47556559337958e-25!GO:0003676;nucleic acid binding;1.60130206143014e-25!GO:0007049;cell cycle;4.27275052447613e-25!GO:0005740;mitochondrial envelope;2.49056690054792e-24!GO:0031966;mitochondrial membrane;1.89215938042486e-23!GO:0005681;spliceosome;4.54155975273305e-23!GO:0000166;nucleotide binding;4.56961675224037e-23!GO:0019866;organelle inner membrane;7.41667710768254e-23!GO:0051641;cellular localization;6.48471127404882e-22!GO:0044445;cytosolic part;1.06139467422609e-21!GO:0051649;establishment of cellular localization;1.43577258909557e-21!GO:0016070;RNA metabolic process;1.49185905354601e-21!GO:0044451;nucleoplasm part;2.45392199302165e-21!GO:0005743;mitochondrial inner membrane;5.16596278330467e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.09141579658995e-20!GO:0016462;pyrophosphatase activity;1.25260838677987e-20!GO:0006119;oxidative phosphorylation;1.47389741632977e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.57876306610963e-20!GO:0017111;nucleoside-triphosphatase activity;6.15382715352456e-20!GO:0016874;ligase activity;6.39925789296178e-19!GO:0044455;mitochondrial membrane part;1.16029293479913e-18!GO:0012505;endomembrane system;1.5235839660469e-18!GO:0015934;large ribosomal subunit;1.53307975218143e-18!GO:0015935;small ribosomal subunit;5.90160058937246e-18!GO:0031980;mitochondrial lumen;6.55980455996462e-18!GO:0005759;mitochondrial matrix;6.55980455996462e-18!GO:0006512;ubiquitin cycle;9.72234052784512e-18!GO:0022402;cell cycle process;1.58232027954052e-17!GO:0008134;transcription factor binding;3.9141578673816e-17!GO:0005694;chromosome;4.65286812256548e-17!GO:0006974;response to DNA damage stimulus;5.65642634094271e-17!GO:0048770;pigment granule;6.49939728707347e-17!GO:0042470;melanosome;6.49939728707347e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.3492296329722e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.70385175569568e-16!GO:0022618;protein-RNA complex assembly;3.44032606698382e-16!GO:0006366;transcription from RNA polymerase II promoter;3.5726714577816e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.70249769727387e-16!GO:0019941;modification-dependent protein catabolic process;4.89255641337149e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.89255641337149e-16!GO:0032553;ribonucleotide binding;6.71244777820488e-16!GO:0032555;purine ribonucleotide binding;6.71244777820488e-16!GO:0044257;cellular protein catabolic process;7.85443011169499e-16!GO:0044265;cellular macromolecule catabolic process;1.03842284173751e-15!GO:0005746;mitochondrial respiratory chain;1.10274970412598e-15!GO:0017076;purine nucleotide binding;1.1297494889538e-15!GO:0006457;protein folding;2.07356941258589e-15!GO:0005783;endoplasmic reticulum;2.19656892707768e-15!GO:0005730;nucleolus;6.71227486461159e-15!GO:0044427;chromosomal part;7.353942946518e-15!GO:0043285;biopolymer catabolic process;1.06080487052343e-14!GO:0008135;translation factor activity, nucleic acid binding;1.23176260773482e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22314726364068e-14!GO:0006281;DNA repair;3.84628765270243e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.80966152460787e-14!GO:0003954;NADH dehydrogenase activity;6.80966152460787e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.80966152460787e-14!GO:0005761;mitochondrial ribosome;7.13975091472093e-14!GO:0000313;organellar ribosome;7.13975091472093e-14!GO:0051276;chromosome organization and biogenesis;1.05805676765691e-13!GO:0051082;unfolded protein binding;1.13488984731966e-13!GO:0005794;Golgi apparatus;1.89974200153292e-13!GO:0006605;protein targeting;2.70602800817681e-13!GO:0030163;protein catabolic process;2.99923775491928e-13!GO:0043412;biopolymer modification;2.99923775491928e-13!GO:0009057;macromolecule catabolic process;3.21140941774989e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.28554867747105e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.10319679148416e-13!GO:0000278;mitotic cell cycle;6.2443338192512e-13!GO:0005524;ATP binding;7.6309793284043e-13!GO:0032559;adenyl ribonucleotide binding;9.72600685196492e-13!GO:0030554;adenyl nucleotide binding;2.34946648662802e-12!GO:0044248;cellular catabolic process;2.58100302144608e-12!GO:0044432;endoplasmic reticulum part;2.66808780301447e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.39685959093968e-12!GO:0042773;ATP synthesis coupled electron transport;4.39685959093968e-12!GO:0016192;vesicle-mediated transport;5.13360382740064e-12!GO:0009719;response to endogenous stimulus;5.67773496653737e-12!GO:0005635;nuclear envelope;6.28677928213791e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;6.81246409123276e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.9099925329319e-12!GO:0045271;respiratory chain complex I;6.9099925329319e-12!GO:0005747;mitochondrial respiratory chain complex I;6.9099925329319e-12!GO:0006464;protein modification process;1.141073665375e-11!GO:0006260;DNA replication;1.21590262496754e-11!GO:0016887;ATPase activity;1.31922581682168e-11!GO:0051186;cofactor metabolic process;1.36668690853036e-11!GO:0000074;regulation of progression through cell cycle;1.38044013418826e-11!GO:0051726;regulation of cell cycle;1.42812311766743e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88890753440861e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.2189644565523e-11!GO:0006323;DNA packaging;2.44018763173649e-11!GO:0043687;post-translational protein modification;2.57780657835315e-11!GO:0048193;Golgi vesicle transport;3.57567396236429e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.03325363577775e-11!GO:0000375;RNA splicing, via transesterification reactions;4.03325363577775e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.03325363577775e-11!GO:0012501;programmed cell death;5.80825193683572e-11!GO:0006915;apoptosis;7.36272842684219e-11!GO:0003743;translation initiation factor activity;7.72852872452844e-11!GO:0044453;nuclear membrane part;7.82374625660511e-11!GO:0042623;ATPase activity, coupled;1.18862884037561e-10!GO:0031965;nuclear membrane;1.24672194400067e-10!GO:0003712;transcription cofactor activity;1.30604141194586e-10!GO:0042254;ribosome biogenesis and assembly;1.49245578343177e-10!GO:0006413;translational initiation;2.04837971290664e-10!GO:0006913;nucleocytoplasmic transport;3.18030277677904e-10!GO:0016604;nuclear body;3.32646776390223e-10!GO:0006461;protein complex assembly;3.73918196266153e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.32089638035084e-10!GO:0008219;cell death;4.80947216879043e-10!GO:0016265;death;4.80947216879043e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.76978059478034e-10!GO:0051169;nuclear transport;6.82063600547645e-10!GO:0006732;coenzyme metabolic process;7.54078617197918e-10!GO:0050794;regulation of cellular process;7.64346279397367e-10!GO:0005768;endosome;8.66622616596675e-10!GO:0000785;chromatin;9.03103251809753e-10!GO:0048523;negative regulation of cellular process;1.28398604306673e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.33108600892858e-09!GO:0008639;small protein conjugating enzyme activity;1.34149597910226e-09!GO:0005789;endoplasmic reticulum membrane;1.44002937662688e-09!GO:0006446;regulation of translational initiation;1.4928141260349e-09!GO:0051301;cell division;1.81904125688314e-09!GO:0004386;helicase activity;1.91564743823107e-09!GO:0005643;nuclear pore;2.25685833168087e-09!GO:0022403;cell cycle phase;2.28396030501988e-09!GO:0004842;ubiquitin-protein ligase activity;2.38025640063716e-09!GO:0019787;small conjugating protein ligase activity;2.4424583468154e-09!GO:0050657;nucleic acid transport;3.50761943858924e-09!GO:0051236;establishment of RNA localization;3.50761943858924e-09!GO:0050658;RNA transport;3.50761943858924e-09!GO:0006403;RNA localization;3.93942954379536e-09!GO:0009055;electron carrier activity;4.1349591140666e-09!GO:0008565;protein transporter activity;5.0281183514365e-09!GO:0007067;mitosis;5.84094619316832e-09!GO:0016607;nuclear speck;5.89730688958664e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.06240952757187e-09!GO:0000087;M phase of mitotic cell cycle;6.32257006417505e-09!GO:0006333;chromatin assembly or disassembly;7.01820328557542e-09!GO:0032446;protein modification by small protein conjugation;7.59014519896689e-09!GO:0016567;protein ubiquitination;8.94704046455542e-09!GO:0065004;protein-DNA complex assembly;9.40663971736503e-09!GO:0048475;coated membrane;1.30771779132378e-08!GO:0030117;membrane coat;1.30771779132378e-08!GO:0048519;negative regulation of biological process;1.30971833030739e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.31480265044525e-08!GO:0031324;negative regulation of cellular metabolic process;1.98982827751238e-08!GO:0065002;intracellular protein transport across a membrane;2.00101613563627e-08!GO:0016881;acid-amino acid ligase activity;2.41614169993893e-08!GO:0043566;structure-specific DNA binding;2.61117733019755e-08!GO:0009060;aerobic respiration;4.1619409767629e-08!GO:0015986;ATP synthesis coupled proton transport;9.85028274307405e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.85028274307405e-08!GO:0045333;cellular respiration;1.1225723252786e-07!GO:0051188;cofactor biosynthetic process;1.19137567733253e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31154585367291e-07!GO:0045786;negative regulation of progression through cell cycle;1.34877877268178e-07!GO:0006399;tRNA metabolic process;1.49638745541197e-07!GO:0008026;ATP-dependent helicase activity;1.85153856735831e-07!GO:0003697;single-stranded DNA binding;1.8835118690822e-07!GO:0000279;M phase;1.92291332145715e-07!GO:0046930;pore complex;2.01653679298455e-07!GO:0051028;mRNA transport;2.17264668411241e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.29278087039895e-07!GO:0009892;negative regulation of metabolic process;2.40716507274743e-07!GO:0009056;catabolic process;2.40716507274743e-07!GO:0016568;chromatin modification;2.55664307488498e-07!GO:0005667;transcription factor complex;2.94286363109625e-07!GO:0030120;vesicle coat;3.16879159912974e-07!GO:0030662;coated vesicle membrane;3.16879159912974e-07!GO:0003924;GTPase activity;3.57340641310492e-07!GO:0009259;ribonucleotide metabolic process;3.82532280913324e-07!GO:0042981;regulation of apoptosis;4.05622631995469e-07!GO:0016787;hydrolase activity;4.46571719208053e-07!GO:0019829;cation-transporting ATPase activity;4.74595248637844e-07!GO:0016564;transcription repressor activity;4.76806366957899e-07!GO:0017038;protein import;4.78493583449521e-07!GO:0043067;regulation of programmed cell death;5.22631518091172e-07!GO:0006163;purine nucleotide metabolic process;5.37823657459658e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.47756137790869e-07!GO:0019222;regulation of metabolic process;6.20777526380312e-07!GO:0009108;coenzyme biosynthetic process;6.43946052765026e-07!GO:0006364;rRNA processing;6.90637848299884e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.5745253660386e-07!GO:0016072;rRNA metabolic process;7.9385858793938e-07!GO:0043623;cellular protein complex assembly;8.06710125062887e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.10590872506035e-07!GO:0005856;cytoskeleton;8.9101437986151e-07!GO:0016481;negative regulation of transcription;9.91861861395833e-07!GO:0006099;tricarboxylic acid cycle;9.98917592492224e-07!GO:0046356;acetyl-CoA catabolic process;9.98917592492224e-07!GO:0005793;ER-Golgi intermediate compartment;1.14512160045501e-06!GO:0006754;ATP biosynthetic process;1.3468613421378e-06!GO:0006753;nucleoside phosphate metabolic process;1.3468613421378e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.43210275091285e-06!GO:0007005;mitochondrion organization and biogenesis;1.61149177383678e-06!GO:0046034;ATP metabolic process;1.73160290872525e-06!GO:0006164;purine nucleotide biosynthetic process;1.75844993131411e-06!GO:0016563;transcription activator activity;1.92941029562727e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.42021971147476e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.42021971147476e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.42021971147476e-06!GO:0004298;threonine endopeptidase activity;2.42021971147476e-06!GO:0050789;regulation of biological process;2.65772978923988e-06!GO:0009260;ribonucleotide biosynthetic process;2.74790270410271e-06!GO:0015630;microtubule cytoskeleton;2.80311977489333e-06!GO:0006084;acetyl-CoA metabolic process;2.91361505276065e-06!GO:0051246;regulation of protein metabolic process;3.26850973849173e-06!GO:0009150;purine ribonucleotide metabolic process;3.4507679605332e-06!GO:0043038;amino acid activation;3.70707533656401e-06!GO:0006418;tRNA aminoacylation for protein translation;3.70707533656401e-06!GO:0043039;tRNA aminoacylation;3.70707533656401e-06!GO:0045259;proton-transporting ATP synthase complex;3.74433413078728e-06!GO:0009141;nucleoside triphosphate metabolic process;3.90931595204015e-06!GO:0044431;Golgi apparatus part;4.19023896707099e-06!GO:0000245;spliceosome assembly;5.20077669287728e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.50032637174778e-06!GO:0031988;membrane-bound vesicle;5.50212426493659e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.73705922950469e-06!GO:0007398;ectoderm development;6.08960095215029e-06!GO:0042802;identical protein binding;6.16199121879224e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.36720940680539e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.40552321520592e-06!GO:0031497;chromatin assembly;6.40552321520592e-06!GO:0016779;nucleotidyltransferase activity;6.51019886225536e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.57175857939116e-06!GO:0009142;nucleoside triphosphate biosynthetic process;7.10217139186591e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.10217139186591e-06!GO:0006261;DNA-dependent DNA replication;7.52232104920808e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.00889129627342e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.00889129627342e-06!GO:0005798;Golgi-associated vesicle;8.71340421177257e-06!GO:0005525;GTP binding;9.91849512673603e-06!GO:0006334;nucleosome assembly;1.01321356212657e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.0652777924309e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.0652777924309e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.12315506303587e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.12709946499142e-05!GO:0000151;ubiquitin ligase complex;1.19053566877636e-05!GO:0008544;epidermis development;1.21330358368749e-05!GO:0051427;hormone receptor binding;1.23818816228019e-05!GO:0045893;positive regulation of transcription, DNA-dependent;1.25841425811366e-05!GO:0006752;group transfer coenzyme metabolic process;1.26533548539441e-05!GO:0009109;coenzyme catabolic process;1.2763113809817e-05!GO:0003713;transcription coactivator activity;1.36329425228721e-05!GO:0005657;replication fork;1.36823365777289e-05!GO:0005770;late endosome;1.48565629027708e-05!GO:0043069;negative regulation of programmed cell death;1.53249926331037e-05!GO:0006916;anti-apoptosis;1.57531593218329e-05!GO:0006613;cotranslational protein targeting to membrane;1.67363388059028e-05!GO:0006793;phosphorus metabolic process;1.71350985588237e-05!GO:0006796;phosphate metabolic process;1.71350985588237e-05!GO:0043066;negative regulation of apoptosis;2.08256495923447e-05!GO:0044440;endosomal part;2.08256495923447e-05!GO:0010008;endosome membrane;2.08256495923447e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.2156097146509e-05!GO:0031982;vesicle;2.55391267032366e-05!GO:0030216;keratinocyte differentiation;2.64977309979833e-05!GO:0035257;nuclear hormone receptor binding;2.6667050633234e-05!GO:0003682;chromatin binding;2.71385932780501e-05!GO:0009117;nucleotide metabolic process;2.7908469475434e-05!GO:0048522;positive regulation of cellular process;2.96622073754524e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.02971577550141e-05!GO:0051187;cofactor catabolic process;3.18912891702378e-05!GO:0005769;early endosome;3.48231009048148e-05!GO:0005762;mitochondrial large ribosomal subunit;3.48231009048148e-05!GO:0000315;organellar large ribosomal subunit;3.48231009048148e-05!GO:0051168;nuclear export;3.49971396244221e-05!GO:0045941;positive regulation of transcription;3.66920597278641e-05!GO:0051170;nuclear import;3.80993361319528e-05!GO:0031410;cytoplasmic vesicle;4.48638874741319e-05!GO:0048471;perinuclear region of cytoplasm;4.50819696723529e-05!GO:0003724;RNA helicase activity;5.20872610280607e-05!GO:0003714;transcription corepressor activity;5.23733027365157e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.58578632473661e-05!GO:0045892;negative regulation of transcription, DNA-dependent;5.66615151462257e-05!GO:0030118;clathrin coat;6.09589933309349e-05!GO:0031323;regulation of cellular metabolic process;6.19226006803259e-05!GO:0032561;guanyl ribonucleotide binding;7.03273130257736e-05!GO:0019001;guanyl nucleotide binding;7.03273130257736e-05!GO:0008654;phospholipid biosynthetic process;8.84749863502494e-05!GO:0006606;protein import into nucleus;0.000101815643762536!GO:0051329;interphase of mitotic cell cycle;0.000103938042224221!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000116003021077146!GO:0003690;double-stranded DNA binding;0.000126150150847285!GO:0046983;protein dimerization activity;0.000128871392369167!GO:0006612;protein targeting to membrane;0.000148179120439556!GO:0005813;centrosome;0.000158755795412481!GO:0007264;small GTPase mediated signal transduction;0.00016646391895728!GO:0000139;Golgi membrane;0.000177859063659825!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000196937698285867!GO:0051325;interphase;0.00022011663639235!GO:0006350;transcription;0.000222316118861634!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000227629331978887!GO:0005819;spindle;0.000235244053186781!GO:0043021;ribonucleoprotein binding;0.000235683054198641!GO:0016044;membrane organization and biogenesis;0.000241757053256168!GO:0051789;response to protein stimulus;0.000248221180943508!GO:0006986;response to unfolded protein;0.000248221180943508!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000260127114425859!GO:0016310;phosphorylation;0.000275879345427871!GO:0000314;organellar small ribosomal subunit;0.000278435571913967!GO:0005763;mitochondrial small ribosomal subunit;0.000278435571913967!GO:0008094;DNA-dependent ATPase activity;0.000314319345506052!GO:0030119;AP-type membrane coat adaptor complex;0.000332975815430105!GO:0000775;chromosome, pericentric region;0.000341764049253844!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00034320378672883!GO:0005773;vacuole;0.0003538830132457!GO:0031252;leading edge;0.000358972345067644!GO:0007010;cytoskeleton organization and biogenesis;0.000367133659406096!GO:0005815;microtubule organizing center;0.000384427121102343!GO:0003702;RNA polymerase II transcription factor activity;0.000408482691479032!GO:0003729;mRNA binding;0.000412605386620596!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000452244312192723!GO:0016197;endosome transport;0.000462781570596749!GO:0007051;spindle organization and biogenesis;0.000472720339683228!GO:0001533;cornified envelope;0.00055718614146621!GO:0030131;clathrin adaptor complex;0.000584693419813178!GO:0003899;DNA-directed RNA polymerase activity;0.000607392544261231!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000676348224837312!GO:0045454;cell redox homeostasis;0.000690383815905553!GO:0065009;regulation of a molecular function;0.000723265943217416!GO:0051252;regulation of RNA metabolic process;0.00074887625124775!GO:0050662;coenzyme binding;0.000755553619843975!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000856819651388017!GO:0010468;regulation of gene expression;0.00087984309677564!GO:0016740;transferase activity;0.000887151630067697!GO:0030663;COPI coated vesicle membrane;0.00092563723617534!GO:0030126;COPI vesicle coat;0.00092563723617534!GO:0005788;endoplasmic reticulum lumen;0.00092878847705181!GO:0008186;RNA-dependent ATPase activity;0.000939836372990668!GO:0051287;NAD binding;0.000974369366917838!GO:0006402;mRNA catabolic process;0.000979309592082321!GO:0008250;oligosaccharyl transferase complex;0.00110660799606952!GO:0006302;double-strand break repair;0.00112915116707095!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118816461886122!GO:0006352;transcription initiation;0.00122458512253121!GO:0051920;peroxiredoxin activity;0.00133635348390886!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00138348631325637!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00138348631325637!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00138348631325637!GO:0051052;regulation of DNA metabolic process;0.00139483515767469!GO:0043681;protein import into mitochondrion;0.0014195871222983!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0014195871222983!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00148828609571477!GO:0035258;steroid hormone receptor binding;0.00155223960298121!GO:0005885;Arp2/3 protein complex;0.00157934810832999!GO:0003684;damaged DNA binding;0.00159340953646246!GO:0000323;lytic vacuole;0.00165614997308934!GO:0005764;lysosome;0.00165614997308934!GO:0007243;protein kinase cascade;0.00165614997308934!GO:0033116;ER-Golgi intermediate compartment membrane;0.00165614997308934!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00171222959961538!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0017150696676001!GO:0007006;mitochondrial membrane organization and biogenesis;0.00182453508105125!GO:0015631;tubulin binding;0.00187331850641782!GO:0065007;biological regulation;0.00189999417903227!GO:0043488;regulation of mRNA stability;0.00198102654661784!GO:0043487;regulation of RNA stability;0.00198102654661784!GO:0030132;clathrin coat of coated pit;0.00198102654661784!GO:0000776;kinetochore;0.00198106944658383!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00202028689964121!GO:0004576;oligosaccharyl transferase activity;0.00214198590081206!GO:0032774;RNA biosynthetic process;0.00218229878269615!GO:0048500;signal recognition particle;0.00235012709401411!GO:0016491;oxidoreductase activity;0.00236376269610946!GO:0019843;rRNA binding;0.00239315984991179!GO:0006414;translational elongation;0.00240806072505359!GO:0016363;nuclear matrix;0.00241621598324976!GO:0000075;cell cycle checkpoint;0.00247156490052424!GO:0030176;integral to endoplasmic reticulum membrane;0.00256725918279291!GO:0008601;protein phosphatase type 2A regulator activity;0.00260273717927653!GO:0006351;transcription, DNA-dependent;0.00260755896989943!GO:0004004;ATP-dependent RNA helicase activity;0.00260755896989943!GO:0030137;COPI-coated vesicle;0.002651936148826!GO:0005905;coated pit;0.00278118065350127!GO:0016251;general RNA polymerase II transcription factor activity;0.00279429016766954!GO:0030521;androgen receptor signaling pathway;0.00279429016766954!GO:0019899;enzyme binding;0.00314840061808743!GO:0006611;protein export from nucleus;0.00316697921189737!GO:0008312;7S RNA binding;0.00332407067416859!GO:0015980;energy derivation by oxidation of organic compounds;0.00335647129414087!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00346579786883063!GO:0032508;DNA duplex unwinding;0.00348705311295412!GO:0032392;DNA geometric change;0.00348705311295412!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00377142748685322!GO:0015399;primary active transmembrane transporter activity;0.00377142748685322!GO:0018196;peptidyl-asparagine modification;0.0038677381822954!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0038677381822954!GO:0005048;signal sequence binding;0.0038677381822954!GO:0000228;nuclear chromosome;0.00394917729322038!GO:0008287;protein serine/threonine phosphatase complex;0.00398984117067809!GO:0006626;protein targeting to mitochondrion;0.0041858584746237!GO:0008092;cytoskeletal protein binding;0.00426677738229732!GO:0048518;positive regulation of biological process;0.00442508071050393!GO:0003678;DNA helicase activity;0.00442508071050393!GO:0000159;protein phosphatase type 2A complex;0.0045110147194784!GO:0007034;vacuolar transport;0.00456690792540925!GO:0048487;beta-tubulin binding;0.00456988936431252!GO:0003746;translation elongation factor activity;0.0046872845596877!GO:0006405;RNA export from nucleus;0.00485887647537301!GO:0001726;ruffle;0.00487477724966328!GO:0006839;mitochondrial transport;0.0050153767252015!GO:0033673;negative regulation of kinase activity;0.00512106126105516!GO:0006469;negative regulation of protein kinase activity;0.00512106126105516!GO:0050681;androgen receptor binding;0.00512106126105516!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00515779200423524!GO:0006401;RNA catabolic process;0.00546293010126836!GO:0030133;transport vesicle;0.00553103134913075!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00555327815014658!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00555327815014658!GO:0008361;regulation of cell size;0.00556583437166522!GO:0046489;phosphoinositide biosynthetic process;0.00556583437166522!GO:0019867;outer membrane;0.00568963469596162!GO:0000049;tRNA binding;0.00586672498789035!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00587170468635674!GO:0016859;cis-trans isomerase activity;0.00594044813699878!GO:0030518;steroid hormone receptor signaling pathway;0.0059787628242861!GO:0006091;generation of precursor metabolites and energy;0.00615616233980309!GO:0030036;actin cytoskeleton organization and biogenesis;0.00621789311505736!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00621789311505736!GO:0045047;protein targeting to ER;0.00621789311505736!GO:0000786;nucleosome;0.00621789311505736!GO:0009165;nucleotide biosynthetic process;0.0062960392617822!GO:0006891;intra-Golgi vesicle-mediated transport;0.00654350020707685!GO:0048037;cofactor binding;0.00658359640215747!GO:0015992;proton transport;0.00659957575875701!GO:0046474;glycerophospholipid biosynthetic process;0.00668970640283718!GO:0008022;protein C-terminus binding;0.00679648776539703!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00690732390987897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00694203036927506!GO:0007052;mitotic spindle organization and biogenesis;0.00696913738922797!GO:0006818;hydrogen transport;0.00697196842850435!GO:0008632;apoptotic program;0.00714956546940899!GO:0006984;ER-nuclear signaling pathway;0.00732516217549496!GO:0031968;organelle outer membrane;0.00747257814649505!GO:0000792;heterochromatin;0.00750724321519785!GO:0051101;regulation of DNA binding;0.00756216605410095!GO:0030057;desmosome;0.00784001974982914!GO:0030658;transport vesicle membrane;0.00799053411593294!GO:0051348;negative regulation of transferase activity;0.00803721259652271!GO:0005637;nuclear inner membrane;0.00858671020594352!GO:0008033;tRNA processing;0.00867448303466141!GO:0030867;rough endoplasmic reticulum membrane;0.00875381190786053!GO:0006268;DNA unwinding during replication;0.00875381190786053!GO:0003711;transcription elongation regulator activity;0.00876400890462778!GO:0046467;membrane lipid biosynthetic process;0.00876400890462778!GO:0016853;isomerase activity;0.00910267153620302!GO:0008139;nuclear localization sequence binding;0.00928785708510466!GO:0051338;regulation of transferase activity;0.00933777610196424!GO:0043022;ribosome binding;0.00933777610196424!GO:0031072;heat shock protein binding;0.00938291653485182!GO:0031124;mRNA 3'-end processing;0.00943483431698089!GO:0022890;inorganic cation transmembrane transporter activity;0.0094501816734142!GO:0009967;positive regulation of signal transduction;0.00948229632587378!GO:0016049;cell growth;0.0103886741961265!GO:0048468;cell development;0.0105115120428205!GO:0005874;microtubule;0.0105849896946!GO:0005684;U2-dependent spliceosome;0.0109334443616179!GO:0005741;mitochondrial outer membrane;0.0110298581124867!GO:0043588;skin development;0.0111643800355306!GO:0006338;chromatin remodeling;0.011201399779195!GO:0031901;early endosome membrane;0.0112215418499551!GO:0004527;exonuclease activity;0.0113734661832904!GO:0044430;cytoskeletal part;0.0114597217623291!GO:0043624;cellular protein complex disassembly;0.0114597217623291!GO:0007017;microtubule-based process;0.011460825874373!GO:0001558;regulation of cell growth;0.0118483551813065!GO:0030125;clathrin vesicle coat;0.0120890104346635!GO:0030665;clathrin coated vesicle membrane;0.0120890104346635!GO:0045449;regulation of transcription;0.0121979539190405!GO:0005869;dynactin complex;0.0121979539190405!GO:0051098;regulation of binding;0.0122797097242927!GO:0007050;cell cycle arrest;0.0123050961486832!GO:0008610;lipid biosynthetic process;0.0123830229710959!GO:0007265;Ras protein signal transduction;0.0133943023346948!GO:0031529;ruffle organization and biogenesis;0.0134344795150687!GO:0007041;lysosomal transport;0.0135448444899301!GO:0008234;cysteine-type peptidase activity;0.0135914607291973!GO:0050790;regulation of catalytic activity;0.0137213514585481!GO:0030032;lamellipodium biogenesis;0.0142061932619098!GO:0043065;positive regulation of apoptosis;0.0144694822206202!GO:0043596;nuclear replication fork;0.0145115312438059!GO:0016584;nucleosome positioning;0.0146860045525035!GO:0005938;cell cortex;0.0152091378703578!GO:0006310;DNA recombination;0.0156175219071082!GO:0006144;purine base metabolic process;0.0156224475799648!GO:0016272;prefoldin complex;0.0159267163428598!GO:0006354;RNA elongation;0.0160099794555324!GO:0006383;transcription from RNA polymerase III promoter;0.0161886420613464!GO:0043549;regulation of kinase activity;0.0162707792968894!GO:0045045;secretory pathway;0.016310779864211!GO:0005832;chaperonin-containing T-complex;0.016331829636317!GO:0051087;chaperone binding;0.0165241953268868!GO:0006376;mRNA splice site selection;0.0168437609191535!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0168437609191535!GO:0043492;ATPase activity, coupled to movement of substances;0.0171918413405318!GO:0009893;positive regulation of metabolic process;0.0172036861684949!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0174148048350724!GO:0004674;protein serine/threonine kinase activity;0.0176682906794569!GO:0030029;actin filament-based process;0.0177952646091174!GO:0043068;positive regulation of programmed cell death;0.0179293197999443!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182867031988838!GO:0016311;dephosphorylation;0.0182919865861583!GO:0042393;histone binding;0.0184313452687016!GO:0004860;protein kinase inhibitor activity;0.018542203039981!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0190256673881561!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0195515729301525!GO:0030659;cytoplasmic vesicle membrane;0.0202111453834257!GO:0030660;Golgi-associated vesicle membrane;0.0203676303555826!GO:0008180;signalosome;0.0203859702270383!GO:0000339;RNA cap binding;0.0204432091962326!GO:0000059;protein import into nucleus, docking;0.020575973199696!GO:0016791;phosphoric monoester hydrolase activity;0.0206015433732675!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.020756314013391!GO:0015002;heme-copper terminal oxidase activity;0.020756314013391!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.020756314013391!GO:0004129;cytochrome-c oxidase activity;0.020756314013391!GO:0000086;G2/M transition of mitotic cell cycle;0.0213174803073263!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0213174803073263!GO:0035035;histone acetyltransferase binding;0.0216785262314675!GO:0045792;negative regulation of cell size;0.0220774840190698!GO:0032984;macromolecular complex disassembly;0.0221252324540253!GO:0030880;RNA polymerase complex;0.0221333045700328!GO:0008538;proteasome activator activity;0.0221333045700328!GO:0007004;telomere maintenance via telomerase;0.0223024017362309!GO:0008333;endosome to lysosome transport;0.0229664049714444!GO:0051128;regulation of cellular component organization and biogenesis;0.0230550106271956!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0239692937253865!GO:0006672;ceramide metabolic process;0.0255681042089!GO:0050811;GABA receptor binding;0.0256486019316027!GO:0032200;telomere organization and biogenesis;0.0258412578503329!GO:0000723;telomere maintenance;0.0258412578503329!GO:0005669;transcription factor TFIID complex;0.0258412578503329!GO:0006979;response to oxidative stress;0.025990093893377!GO:0030384;phosphoinositide metabolic process;0.0260653621170446!GO:0017166;vinculin binding;0.0265314500245524!GO:0004518;nuclease activity;0.0268095984478414!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.02686951253624!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0272571466870136!GO:0031123;RNA 3'-end processing;0.0283613072696707!GO:0000082;G1/S transition of mitotic cell cycle;0.0284035516966298!GO:0042770;DNA damage response, signal transduction;0.028422559934954!GO:0008637;apoptotic mitochondrial changes;0.0285015193266747!GO:0006289;nucleotide-excision repair;0.0286204663232031!GO:0009112;nucleobase metabolic process;0.0286519038773373!GO:0008017;microtubule binding;0.0288038838327428!GO:0030134;ER to Golgi transport vesicle;0.0297306438061078!GO:0022406;membrane docking;0.029768798600881!GO:0048278;vesicle docking;0.029768798600881!GO:0046966;thyroid hormone receptor binding;0.0299795463092842!GO:0006650;glycerophospholipid metabolic process;0.0303600468844218!GO:0030308;negative regulation of cell growth;0.0303617095889109!GO:0030140;trans-Golgi network transport vesicle;0.0305069223756699!GO:0043241;protein complex disassembly;0.0305186805897303!GO:0005912;adherens junction;0.0307310334320278!GO:0043433;negative regulation of transcription factor activity;0.0308671972161488!GO:0045859;regulation of protein kinase activity;0.0312372829253548!GO:0043601;nuclear replisome;0.0314491973281519!GO:0030894;replisome;0.0314491973281519!GO:0006270;DNA replication initiation;0.0326261060842302!GO:0008097;5S rRNA binding;0.0326645782573384!GO:0030027;lamellipodium;0.0327306871502208!GO:0044452;nucleolar part;0.0327952128736435!GO:0008047;enzyme activator activity;0.0328429733358168!GO:0000209;protein polyubiquitination;0.0328675542535519!GO:0030865;cortical cytoskeleton organization and biogenesis;0.03288085729603!GO:0006506;GPI anchor biosynthetic process;0.0330179429549059!GO:0006643;membrane lipid metabolic process;0.0331604910251332!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0337701759006804!GO:0030235;nitric-oxide synthase regulator activity;0.0339967866125706!GO:0046519;sphingoid metabolic process;0.0342914042061479!GO:0006892;post-Golgi vesicle-mediated transport;0.0344431751391044!GO:0040029;regulation of gene expression, epigenetic;0.0345655596382739!GO:0005784;translocon complex;0.0351997815836382!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0354109230830737!GO:0000428;DNA-directed RNA polymerase complex;0.0354109230830737!GO:0006355;regulation of transcription, DNA-dependent;0.0357560340952001!GO:0045334;clathrin-coated endocytic vesicle;0.0360169295122907!GO:0000790;nuclear chromatin;0.036063445414399!GO:0043403;skeletal muscle regeneration;0.0374470170540924!GO:0005801;cis-Golgi network;0.038335010049164!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0386427740373666!GO:0006378;mRNA polyadenylation;0.0387132160584368!GO:0006950;response to stress;0.0388255996866548!GO:0006275;regulation of DNA replication;0.0388598490648552!GO:0045926;negative regulation of growth;0.0390105064349598!GO:0051540;metal cluster binding;0.0390105064349598!GO:0051536;iron-sulfur cluster binding;0.0390105064349598!GO:0031325;positive regulation of cellular metabolic process;0.0392122962999915!GO:0030522;intracellular receptor-mediated signaling pathway;0.0397233406894881!GO:0040008;regulation of growth;0.0402147111482099!GO:0006497;protein amino acid lipidation;0.0405784512645856!GO:0006904;vesicle docking during exocytosis;0.0407971073405187!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0407971073405187!GO:0010257;NADH dehydrogenase complex assembly;0.0407971073405187!GO:0033108;mitochondrial respiratory chain complex assembly;0.0407971073405187!GO:0006417;regulation of translation;0.0410303904825887!GO:0008426;protein kinase C inhibitor activity;0.0414234119157112!GO:0031902;late endosome membrane;0.0417722629667008!GO:0030433;ER-associated protein catabolic process;0.042148666554711!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.042148666554711!GO:0006505;GPI anchor metabolic process;0.0422318774344299!GO:0004721;phosphoprotein phosphatase activity;0.0422632002732689!GO:0008408;3'-5' exonuclease activity;0.0426140254382884!GO:0044433;cytoplasmic vesicle part;0.0433624639030939!GO:0044454;nuclear chromosome part;0.0434410205746818!GO:0000096;sulfur amino acid metabolic process;0.0438083591947295!GO:0046822;regulation of nucleocytoplasmic transport;0.0438083591947295!GO:0007059;chromosome segregation;0.0453980506168813!GO:0012506;vesicle membrane;0.0458656344461941!GO:0043414;biopolymer methylation;0.0458656344461941!GO:0000781;chromosome, telomeric region;0.0460833317887575!GO:0007242;intracellular signaling cascade;0.0465946920460983!GO:0006595;polyamine metabolic process;0.0469050795693585!GO:0005720;nuclear heterochromatin;0.0472644097910444!GO:0000178;exosome (RNase complex);0.0477955145789984!GO:0046982;protein heterodimerization activity;0.0480608586604226!GO:0000805;X chromosome;0.0480608586604226!GO:0001740;Barr body;0.0480608586604226!GO:0005200;structural constituent of cytoskeleton;0.0480608586604226!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0481607283564232!GO:0007266;Rho protein signal transduction;0.0487718071593324!GO:0006897;endocytosis;0.0487718071593324!GO:0010324;membrane invagination;0.0487718071593324!GO:0004300;enoyl-CoA hydratase activity;0.0488647665828857!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0488952895222247!GO:0004448;isocitrate dehydrogenase activity;0.0493356731500424!GO:0005791;rough endoplasmic reticulum;0.049430854169755!GO:0019752;carboxylic acid metabolic process;0.049430854169755!GO:0046483;heterocycle metabolic process;0.0497204406834072
|sample_id=10553
|sample_id=10553
|sample_note=
|sample_note=

Revision as of 17:38, 25 June 2012


Name:cervical cancer cell line:ME-180
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
age66
cell typeunclassifiable
cell lineME-180
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0567
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.256
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.00561
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00911
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0502
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.163
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0.0782
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.49
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.809
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0124
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.123
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0.975
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.152
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.2
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.107
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11289

Jaspar motifP-value
MA0002.21.29618e-4
MA0003.10.095
MA0004.10.0484
MA0006.10.193
MA0007.10.243
MA0009.10.129
MA0014.10.127
MA0017.10.00287
MA0018.20.00726
MA0019.10.955
MA0024.16.15038e-4
MA0025.10.108
MA0027.10.77
MA0028.10.198
MA0029.10.269
MA0030.10.0516
MA0031.10.0512
MA0035.20.722
MA0038.10.0561
MA0039.20.00221
MA0040.10.253
MA0041.10.54
MA0042.10.754
MA0043.10.0308
MA0046.10.979
MA0047.20.5
MA0048.10.937
MA0050.10.0605
MA0051.10.329
MA0052.10.505
MA0055.10.218
MA0057.10.202
MA0058.10.0172
MA0059.10.0233
MA0060.13.06328e-8
MA0061.10.00276
MA0062.20.602
MA0065.20.0099
MA0066.10.0475
MA0067.10.709
MA0068.10.583
MA0069.10.396
MA0070.10.193
MA0071.10.125
MA0072.10.786
MA0073.10.998
MA0074.10.586
MA0076.10.0832
MA0077.10.703
MA0078.10.199
MA0079.20.321
MA0080.22.12406e-7
MA0081.10.00381
MA0083.10.253
MA0084.10.175
MA0087.10.537
MA0088.10.0496
MA0090.10.0689
MA0091.10.00431
MA0092.10.265
MA0093.10.0682
MA0099.20.781
MA0100.10.735
MA0101.10.0096
MA0102.20.608
MA0103.18.26834e-5
MA0104.20.262
MA0105.13.02901e-6
MA0106.12.05695e-5
MA0107.10.00604
MA0108.20.0015
MA0111.10.979
MA0112.24.41207e-4
MA0113.10.681
MA0114.10.067
MA0115.10.183
MA0116.10.00622
MA0117.10.72
MA0119.10.247
MA0122.10.522
MA0124.10.428
MA0125.15.8062e-5
MA0131.10.271
MA0135.10.188
MA0136.14.00482e-4
MA0137.20.0598
MA0138.20.0927
MA0139.10.583
MA0140.10.9
MA0141.10.107
MA0142.10.898
MA0143.10.417
MA0144.10.153
MA0145.10.568
MA0146.10.115
MA0147.10.213
MA0148.10.112
MA0149.10.238
MA0150.10.0574
MA0152.10.198
MA0153.10.62
MA0154.10.0152
MA0155.10.0515
MA0156.10.0499
MA0157.10.886
MA0159.10.715
MA0160.10.325
MA0162.10.432
MA0163.14.97097e-5
MA0164.10.236
MA0258.10.00409
MA0259.10.778



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11289

Novel motifP-value
10.175
100.0482
1000.934
1010.765
1020.374
1030.0682
1040.982
1050.45
1060.613
1070.989
1080.847
1090.711
110.122
1100.134
1110.0269
1120.315
1130.118
1140.018
1150.295
1160.121
1170.153
1180.0522
1190.244
120.943
1200.691
1210.917
1220.0585
1230.58
1240.211
1250.268
1260.733
1270.266
1280.137
1290.826
130.721
1300.205
1310.344
1320.237
1330.177
1340.424
1350.215
1360.0278
1370.0753
1380.582
1390.0998
140.92
1400.311
1410.935
1420.659
1430.0747
1440.13
1450.512
1460.194
1470.875
1480.103
1490.125
150.123
1500.952
1510.495
1520.793
1530.452
1540.928
1550.581
1560.54
1570.83
1580.287
1590.47
160.973
1600.142
1610.979
1620.93
1630.601
1640.121
1650.328
1660.203
1670.87
1680.905
1690.112
170.9
180.13
190.0401
20.918
200.738
210.717
220.214
230.163
240.452
250.767
260.247
270.396
280.316
290.493
30.101
300.158
310.166
320.00837
330.455
340.0909
350.0401
360.068
370.238
380.841
390.909
40.641
400.842
410.275
420.785
430.0842
440.751
450.718
460.213
470.355
480.463
490.0579
50.515
500.872
510.185
520.348
530.75
540.604
550.438
560.892
570.885
580.831
590.184
60.755
600.785
610.866
620.25
630.964
640.369
650.223
660.0252
670.639
680.142
690.468
70.616
700.385
710.314
720.743
730.632
740.00547
750.596
760.468
770.212
780.239
790.00944
80.168
800.354
810.14
820.0103
830.717
840.926
850.161
860.446
870.106
880.875
890.714
90.147
900.239
910.0798
920.193
930.648
940.00655
950.172
960.0308
970.648
980.0877
990.996



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11289


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000002 (uterine cervix)
0005795 (embryonic uterus)
0000995 (uterus)
0003134 (female reproductive organ)
0000926 (mesoderm)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0000990 (reproductive system)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0003100 (female organism)
0000474 (female reproductive system)
0006603 (presumptive mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10553-107I4&oldid=1834384"