FFCP PHASE1:Mm9::chr6:145064136..145064178,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=16970|HGNC=|MCL_coexpression_id=3|UniProt=D6RIN0,Q3TVR1|association_with_transcript=0bp_to_ENSMUST00000135984,uc009eqv.1,uc009eqw.1_5end|description=CAGE_peak_2_at_Lrmp_5end|id=chr6:145064136..145064178,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000838,1.58e-07,12;CL:0000542,8.18e-07,13;CL:0000051,8.18e-07,13|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.55e-13!48;UBERON:0002405!1.58e-13!70;UBERON:0004177!7.84e-13!29;UBERON:0002390!3.30e-12!45;UBERON:0003061!3.30e-12!45;UBERON:0005057!1.10e-11!51;UBERON:0002370!1.68e-09!23;UBERON:0000974!1.68e-09!23;UBERON:0004807!1.68e-09!23;UBERON:0005058!1.68e-09!23;UBERON:0003351!1.68e-09!23;UBERON:0009113!1.68e-09!23;UBERON:0003295!1.68e-09!23;UBERON:0009722!1.68e-09!23;UBERON:0005562!1.68e-09!23;UBERON:0007690!1.68e-09!23;UBERON:0000065!4.30e-09!41;UBERON:0001041!6.10e-09!92;UBERON:0006562!9.84e-09!24;UBERON:0003408!9.84e-09!24;UBERON:0001557!9.84e-09!24;UBERON:0001042!9.84e-09!24;UBERON:0008814!9.84e-09!24;UBERON:0009145!9.84e-09!24;UBERON:0001004!1.39e-08!42;UBERON:0000077!7.71e-08!97;UBERON:0003104!8.64e-08!131;UBERON:0009142!8.64e-08!131;UBERON:0005911!1.01e-07!69;UBERON:0003081!1.18e-07!88;UBERON:0000072!7.98e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.47e-23,29;UBERON:0005057,8.47e-23,29;UBERON:0002193,1.10e-22,48;UBERON:0002405,1.10e-22,48;UBERON:0002390,2.12e-21,45;UBERON:0003061,2.12e-21,45;UBERON:0000077,1.08e-17,35;UBERON:0002370,2.64e-16,23;UBERON:0000974,2.64e-16,23;UBERON:0004807,2.64e-16,23;UBERON:0005058,2.64e-16,23;UBERON:0003351,2.64e-16,23;UBERON:0009113,2.64e-16,23;UBERON:0003295,2.64e-16,23;UBERON:0009722,2.64e-16,23;UBERON:0005562,2.64e-16,23;UBERON:0007690,2.64e-16,23;UBERON:0006562,2.06e-15,24;UBERON:0003408,2.06e-15,24;UBERON:0001557,2.06e-15,24;UBERON:0001042,2.06e-15,24;UBERON:0008814,2.06e-15,24;UBERON:0009145,2.06e-15,24;UBERON:0000072,3.84e-13,27;UBERON:0001041,2.33e-12,80;UBERON:0000490,4.82e-11,66;UBERON:0003929,1.08e-10,55;UBERON:0003081,1.44e-10,87;UBERON:0000065,6.20e-10,41;UBERON:0001004,1.44e-09,42;UBERON:0005911,1.75e-09,69;UBERON:0002368,3.08e-09,60;UBERON:0007811,1.17e-08,36;UBERON:0002530,5.05e-08,65;UBERON:0002106,6.28e-08,6;UBERON:0004457,6.28e-08,6;UBERON:0000042,6.28e-08,6;UBERON:0004854,6.28e-08,6;UBERON:0009034,6.28e-08,6;UBERON:0002095,6.28e-08,6;UBERON:0004782,6.28e-08,6;UBERON:0003281,6.28e-08,6;UBERON:0009664,6.28e-08,6;UBERON:0002296,6.28e-08,6;UBERON:0005602,6.28e-08,6;UBERON:0001179,6.28e-08,6;UBERON:0006293,6.28e-08,6;UBERON:0000926,1.85e-07,120;UBERON:0004120,1.85e-07,120;UBERON:0006603,1.85e-07,120;UBERON:0000949,2.78e-07,72|phase1_expression=0,0,0,0.30246421130683,0,0,0,1.03298658753261,1.68946466582,0.70219357896598,0.856089841127525,0,2.73921167889929,1.04904482902797,0.666219523631325,1.41732687172878,0,12.3030244489713,11.6547268564878,8.48779303596061,0.340173160604279,3.27660138962921,2.08959831311148,0.639969691173627,1.14704640533585,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,67.802124179379,33.5974198145234,62.8228492768558,64.7054636834116,55.3266842816341,81.5657393092338,0,0,0,0,0,0,0,0,0,11.7447824240415,4.35217285206807,1.68046899571232,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0.227178579999552,0.604572480854284,0.289864488701678,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,1.1418387971906,3.6251303710604,0,0,0.304465478312141,0.691846491768175,0.452167921657868,0,0,0,0.144599356919912,9.73071607144862,0.647067399789637,4.19598885074748,4.363877278217,0,0,0,0,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0,0,0.255715457330331,0,0,0.203678727700633,7.46441823660558,0,0,0,0.229902104433473,0,0.150704817835715,0.0680364991513279,0,0,0,0.215567992932842,0,0,0.219195732427575,0,0.348252166522167,0,0,0.702213187313235,2.05878325691772,2.55747149456033,0.207125772535502,0,0,0,0,0,0,0,0.350296027101508,0,0.164167464079095,0.162137619091711,0.730999937126662,0.439100230582101,0.268412837520744,0,0,0.660837565967596,0.264450566663544,0,0,0,0,0,0,0,0,0,0.397912944082302,0.19496408711912,0.898819408654221,0,0.199141273254367,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0,0,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,1.4470629585145,2.29163266603278,4.02774592431135,2.43202840162553,1.37280706594041,2.87536413054709,1.86070473834252,1.24815069245824,0,0.179397413521912,0,0.739012760666419,0.189491411770485,0,0,0.469380496577004,1.00503754465089,0.238043640886014,1.17080188714679,0.630540576424764,0.8858587585951,0.478364305972461,0.983179888294428,1.89953480052485,0.433947175744535,0,0,0,0,0,0,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0.295301892880773,0.307435147943927,0,0.363533729477506,1.06949213515416,0.632073515871632,0,0,0,0.18006109403131,0,0,0,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0.241251699712623,0,0.164140899745061,0,0,1.70870880797853,1.03193433981611,2.77791791054568,5.83942216714542,4.10082683163076,5.26189798375002,0.849892149969277,1.11961161858926,1.79659965945751,0,0,0.203319467126849,0,0,0,0.269728692769641,0.247960367176008,0,0.129614973291793,0,0,0,0,0,0,0,0.234714477291508,0,0,0,0,13.9044893076398,2.02725215290164,6.7789231728786,19.618044269647,25.7798441761173,24.4378066380956,22.5967445097541,20.5288442772662,23.4242163879703,27.7392776224199,24.9040677287996,17.4449606524157,24.9188669848453,27.115441306124,0,0,0,0,0,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0.412070114477788,0.64183841918363,0,0.25347929989024,0.188626341386076,0.561849044819294,0.384150914429216,0.574354689556133,0,0.347652977834566,0.38581844092741,0.824171801606613,0.735994600671987,0.685738504770831,0.177475806159338,0,0.290692833264657,0.376437521661322,0.338458431566706,0.365855945745545,0.526139422875686,0.814824683075171,0.561142271657738,0.355905054372522,0.394017929502254,0,0.154936841185966,0.192906610981141,0,0.467863216890817,0,0.382576664137687,1.10295709559758,1.15933917810211|short_description=p2@Lrmp}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16970 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D6RIN0,uniprot:Q3TVR1 | |||
|association_with_transcript=0bp_to_ENSMUST00000135984,uc009eqv.1,uc009eqw.1_5end | |||
|cluster_id=chr6:145064136..145064178,+ | |||
|description=CAGE_peak_2_at_Lrmp_5end | |||
|id=chr6:145064136..145064178,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.58e-07,12;CL:0000542,8.18e-07,13;CL:0000051,8.18e-07,13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.55e-13!48;UBERON:0002405!1.58e-13!70;UBERON:0004177!7.84e-13!29;UBERON:0002390!3.30e-12!45;UBERON:0003061!3.30e-12!45;UBERON:0005057!1.10e-11!51;UBERON:0002370!1.68e-09!23;UBERON:0000974!1.68e-09!23;UBERON:0004807!1.68e-09!23;UBERON:0005058!1.68e-09!23;UBERON:0003351!1.68e-09!23;UBERON:0009113!1.68e-09!23;UBERON:0003295!1.68e-09!23;UBERON:0009722!1.68e-09!23;UBERON:0005562!1.68e-09!23;UBERON:0007690!1.68e-09!23;UBERON:0000065!4.30e-09!41;UBERON:0001041!6.10e-09!92;UBERON:0006562!9.84e-09!24;UBERON:0003408!9.84e-09!24;UBERON:0001557!9.84e-09!24;UBERON:0001042!9.84e-09!24;UBERON:0008814!9.84e-09!24;UBERON:0009145!9.84e-09!24;UBERON:0001004!1.39e-08!42;UBERON:0000077!7.71e-08!97;UBERON:0003104!8.64e-08!131;UBERON:0009142!8.64e-08!131;UBERON:0005911!1.01e-07!69;UBERON:0003081!1.18e-07!88;UBERON:0000072!7.98e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.47e-23,29;UBERON:0005057,8.47e-23,29;UBERON:0002193,1.10e-22,48;UBERON:0002405,1.10e-22,48;UBERON:0002390,2.12e-21,45;UBERON:0003061,2.12e-21,45;UBERON:0000077,1.08e-17,35;UBERON:0002370,2.64e-16,23;UBERON:0000974,2.64e-16,23;UBERON:0004807,2.64e-16,23;UBERON:0005058,2.64e-16,23;UBERON:0003351,2.64e-16,23;UBERON:0009113,2.64e-16,23;UBERON:0003295,2.64e-16,23;UBERON:0009722,2.64e-16,23;UBERON:0005562,2.64e-16,23;UBERON:0007690,2.64e-16,23;UBERON:0006562,2.06e-15,24;UBERON:0003408,2.06e-15,24;UBERON:0001557,2.06e-15,24;UBERON:0001042,2.06e-15,24;UBERON:0008814,2.06e-15,24;UBERON:0009145,2.06e-15,24;UBERON:0000072,3.84e-13,27;UBERON:0001041,2.33e-12,80;UBERON:0000490,4.82e-11,66;UBERON:0003929,1.08e-10,55;UBERON:0003081,1.44e-10,87;UBERON:0000065,6.20e-10,41;UBERON:0001004,1.44e-09,42;UBERON:0005911,1.75e-09,69;UBERON:0002368,3.08e-09,60;UBERON:0007811,1.17e-08,36;UBERON:0002530,5.05e-08,65;UBERON:0002106,6.28e-08,6;UBERON:0004457,6.28e-08,6;UBERON:0000042,6.28e-08,6;UBERON:0004854,6.28e-08,6;UBERON:0009034,6.28e-08,6;UBERON:0002095,6.28e-08,6;UBERON:0004782,6.28e-08,6;UBERON:0003281,6.28e-08,6;UBERON:0009664,6.28e-08,6;UBERON:0002296,6.28e-08,6;UBERON:0005602,6.28e-08,6;UBERON:0001179,6.28e-08,6;UBERON:0006293,6.28e-08,6;UBERON:0000926,1.85e-07,120;UBERON:0004120,1.85e-07,120;UBERON:0006603,1.85e-07,120;UBERON:0000949,2.78e-07,72 | |||
|phase1_expression=0,0,0,0.30246421130683,0,0,0,1.03298658753261,1.68946466582,0.70219357896598,0.856089841127525,0,2.73921167889929,1.04904482902797,0.666219523631325,1.41732687172878,0,12.3030244489713,11.6547268564878,8.48779303596061,0.340173160604279,3.27660138962921,2.08959831311148,0.639969691173627,1.14704640533585,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,67.802124179379,33.5974198145234,62.8228492768558,64.7054636834116,55.3266842816341,81.5657393092338,0,0,0,0,0,0,0,0,0,11.7447824240415,4.35217285206807,1.68046899571232,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0.599200221036809,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0.227178579999552,0.604572480854284,0.289864488701678,0,0,0,0,0,1.26399978118577,0,0,0,0,0,0,0,0,0,0,1.1418387971906,3.6251303710604,0,0,0.304465478312141,0.691846491768175,0.452167921657868,0,0,0,0.144599356919912,9.73071607144862,0.647067399789637,4.19598885074748,4.363877278217,0,0,0,0,0.958520996047362,0.599902730993408,0.381210681219194,0,0,0,0,0.255715457330331,0,0,0.203678727700633,7.46441823660558,0,0,0,0.229902104433473,0,0.150704817835715,0.0680364991513279,0,0,0,0.215567992932842,0,0,0.219195732427575,0,0.348252166522167,0,0,0.702213187313235,2.05878325691772,2.55747149456033,0.207125772535502,0,0,0,0,0,0,0,0.350296027101508,0,0.164167464079095,0.162137619091711,0.730999937126662,0.439100230582101,0.268412837520744,0,0,0.660837565967596,0.264450566663544,0,0,0,0,0,0,0,0,0,0.397912944082302,0.19496408711912,0.898819408654221,0,0.199141273254367,0,0,0,0.203651327845314,0.193952487167626,0.0701358198903186,0.126473074248515,0,0,0,0,0.166845105716094,0.196558995113203,0.449724224769707,0.202860121388503,1.4470629585145,2.29163266603278,4.02774592431135,2.43202840162553,1.37280706594041,2.87536413054709,1.86070473834252,1.24815069245824,0,0.179397413521912,0,0.739012760666419,0.189491411770485,0,0,0.469380496577004,1.00503754465089,0.238043640886014,1.17080188714679,0.630540576424764,0.8858587585951,0.478364305972461,0.983179888294428,1.89953480052485,0.433947175744535,0,0,0,0,0,0,0,0.252470927204373,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0.162886959353576,0.164970122972535,0,0,0.302323556964751,0,0.295301892880773,0.307435147943927,0,0.363533729477506,1.06949213515416,0.632073515871632,0,0,0,0.18006109403131,0,0,0,0.178368817602071,0,0,0,0,0,0,0.161464426695906,0.241251699712623,0,0.164140899745061,0,0,1.70870880797853,1.03193433981611,2.77791791054568,5.83942216714542,4.10082683163076,5.26189798375002,0.849892149969277,1.11961161858926,1.79659965945751,0,0,0.203319467126849,0,0,0,0.269728692769641,0.247960367176008,0,0.129614973291793,0,0,0,0,0,0,0,0.234714477291508,0,0,0,0,13.9044893076398,2.02725215290164,6.7789231728786,19.618044269647,25.7798441761173,24.4378066380956,22.5967445097541,20.5288442772662,23.4242163879703,27.7392776224199,24.9040677287996,17.4449606524157,24.9188669848453,27.115441306124,0,0,0,0,0,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0.412070114477788,0.64183841918363,0,0.25347929989024,0.188626341386076,0.561849044819294,0.384150914429216,0.574354689556133,0,0.347652977834566,0.38581844092741,0.824171801606613,0.735994600671987,0.685738504770831,0.177475806159338,0,0.290692833264657,0.376437521661322,0.338458431566706,0.365855945745545,0.526139422875686,0.814824683075171,0.561142271657738,0.355905054372522,0.394017929502254,0,0.154936841185966,0.192906610981141,0,0.467863216890817,0,0.382576664137687,1.10295709559758,1.15933917810211 | |||
|short_description=p2@Lrmp | |||
}} |
Revision as of 09:46, 5 August 2015
Short description: | p2@Lrmp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lrmp_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | 0bp_to_ENSMUST00000135984, uc009eqv.1, uc009eqw.1_5end |
EntrezGene: | 16970 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.58e-07 | 12 |
lymphocyte | 8.18e-07 | 13 |
common lymphoid progenitor | 8.18e-07 | 13 |