FFCP PHASE1:Hg19::chr3:45838037..45838084,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54716 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NP91 | |||
|association_with_transcript=-2bp_to_NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | |||
|description=CAGE_peak_1_at_SLC6A20_5end | |||
|id=chr3:45838037..45838084,- | |||
|ontology_enrichment_celltype=CL:1000507!8.17e-10!12;CL:1000494!8.17e-10!12;CL:1000449!2.91e-08!16;CL:1000497!5.20e-07!18;CL:0002518!5.20e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000507;6.18e-13;10!CL:1000494;6.18e-13;10!CL:0002586;2.77e-12;3!CL:0000239;5.10e-12;3!CL:1000615;5.10e-12;3!CL:0002306;5.10e-12;3!CL:1000449;3.13e-11;15!CL:1000497;8.54e-10;17!CL:0002518;8.54e-10;17!CL:0000149;2.55e-09;4!CL:0002681;1.19e-07;12!CL:0002584;1.19e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.76e-13,10;CL:1000494,6.76e-13,10;CL:0002586,2.89e-12,3;CL:0000239,7.45e-12,3;CL:1000615,7.45e-12,3;CL:0002306,7.45e-12,3;CL:1000449,3.41e-11,15;CL:1000497,9.19e-10,17;CL:0002518,9.19e-10,17;CL:0000149,2.63e-09,4;CL:0002681,1.42e-07,12;CL:0002584,1.42e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.89e-34!115;UBERON:0005743!2.58e-25!86;UBERON:0003075!2.59e-25!86;UBERON:0007284!2.59e-25!86;UBERON:0000073!9.46e-25!94;UBERON:0001016!9.46e-25!94;UBERON:0001049!2.41e-24!57;UBERON:0005068!2.41e-24!57;UBERON:0006241!2.41e-24!57;UBERON:0007135!2.41e-24!57;UBERON:0002346!1.96e-23!90;UBERON:0001017!1.62e-21!82;UBERON:0002616!1.53e-18!59;UBERON:0000955!1.87e-18!69;UBERON:0006238!1.87e-18!69;UBERON:0003080!3.35e-18!42;UBERON:0003056!1.20e-17!61;UBERON:0004121!1.62e-17!169;UBERON:0002780!3.11e-17!41;UBERON:0001890!3.11e-17!41;UBERON:0006240!3.11e-17!41;UBERON:0000924!1.23e-16!173;UBERON:0006601!1.23e-16!173;UBERON:0000033!4.75e-16!123;UBERON:0000153!5.41e-16!129;UBERON:0007811!5.41e-16!129;UBERON:0001893!8.79e-13!34;UBERON:0000481!4.26e-12!347;UBERON:0002791!5.36e-12!33;UBERON:0002619!1.11e-11!22;UBERON:0001950!1.22e-11!20;UBERON:0000064!2.60e-11!219;UBERON:0002020!3.92e-11!34;UBERON:0003528!3.92e-11!34;UBERON:0001869!4.72e-11!32;UBERON:0000062!4.17e-10!511;UBERON:0000489!6.96e-10!32;UBERON:0009773!8.17e-10!12;UBERON:0001231!8.17e-10!12;UBERON:0004810!8.17e-10!12;UBERON:0000956!9.40e-10!25;UBERON:0000203!9.40e-10!25;UBERON:0004111!1.53e-09!241;UBERON:0000475!4.83e-09!365;UBERON:0006555!4.88e-09!17;UBERON:0005103!4.88e-09!17;UBERON:0000083!4.88e-09!17;UBERON:0009201!4.88e-09!17;UBERON:0004819!4.88e-09!17;UBERON:0006553!4.88e-09!17;UBERON:0003074!4.88e-09!17;UBERON:0003060!4.88e-09!17;UBERON:0004876!1.64e-08!20;UBERON:0000080!2.40e-08!18;UBERON:0002120!2.40e-08!18;UBERON:0004875!2.40e-08!18;UBERON:0005721!2.40e-08!18;UBERON:0005754!2.40e-08!18;UBERON:0007297!2.40e-08!18;UBERON:0000025!2.45e-08!194;UBERON:0004211!2.91e-08!16;UBERON:0001285!2.91e-08!16;UBERON:0007684!2.91e-08!16;UBERON:0003220!2.91e-08!16;UBERON:0004208!2.91e-08!16;UBERON:0000483!4.48e-08!309;UBERON:0000119!8.46e-08!312;UBERON:0003887!1.15e-07!21;UBERON:0002298!1.43e-07!8;UBERON:0000966!1.53e-07!5;UBERON:0005388!1.53e-07!5;UBERON:0001802!1.53e-07!5;UBERON:0003076!2.43e-07!15;UBERON:0003057!2.43e-07!15;UBERON:0002113!2.78e-07!27;UBERON:0003918!2.78e-07!27;UBERON:0005095!2.78e-07!27;UBERON:0007687!2.78e-07!27;UBERON:0001871!3.24e-07!7;UBERON:0003064!4.63e-07!37;UBERON:0000058!6.50e-07!26;UBERON:0000477!6.70e-07!286;UBERON:0005409!9.91e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;4.42e-13;4!UBERON:0004211;6.18e-13;10!UBERON:0009773;6.18e-13;10!UBERON:0001231;6.18e-13;10!UBERON:0004810;6.18e-13;10!UBERON:0000966;6.20e-13;5!UBERON:0005388;6.20e-13;5!UBERON:0001802;6.20e-13;5!UBERON:0001781;2.77e-12;3!UBERON:0001782;2.77e-12;3!UBERON:0001896;4.55e-12;3!UBERON:0005290;4.55e-12;3!UBERON:0006853;5.10e-12;3!UBERON:0007685;5.10e-12;3!UBERON:0004134;5.10e-12;3!UBERON:0006555;3.13e-11;15!UBERON:0004819;3.13e-11;15!UBERON:0001285;3.13e-11;15!UBERON:0007684;3.13e-11;15!UBERON:0000489;5.99e-11;29!UBERON:0000160;6.96e-10;17!UBERON:0002360;8.30e-09;2!UBERON:0000094;8.30e-09;2!UBERON:0010743;8.30e-09;2!UBERON:0002113;1.13e-08;24!UBERON:0011143;1.13e-08;24!UBERON:0005162;1.24e-08;2!UBERON:0000122;1.24e-08;2!UBERON:0001905;1.78e-08;2!UBERON:0002757;1.78e-08;2!UBERON:0010134;1.78e-08;2!UBERON:0005408;1.78e-08;2!UBERON:0001899;1.78e-08;2!UBERON:0002104;4.53e-08;21!UBERON:0001225;1.19e-07;12!UBERON:0008987;1.19e-07;12!UBERON:0005409;1.65e-07;22!UBERON:0004732;4.14e-07;13!UBERON:0001032;6.16e-07;24!UBERON:0004456;6.16e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.79e-16,6;UBERON:0005388,1.79e-16,6;UBERON:0001802,1.79e-16,6;UBERON:0001781,5.65e-16,4;UBERON:0003075,2.82e-13,82;UBERON:0007284,2.82e-13,82;UBERON:0007023,3.57e-13,114;UBERON:0002108,4.94e-13,4;UBERON:0004810,6.76e-13,10;UBERON:0002346,1.91e-12,86;UBERON:0001896,2.89e-12,3;UBERON:0001782,2.89e-12,3;UBERON:0005290,2.89e-12,3;UBERON:0005424,2.89e-12,3;UBERON:0010096,2.89e-12,3;UBERON:0006853,7.45e-12,3;UBERON:0007685,7.45e-12,3;UBERON:0004134,7.45e-12,3;UBERON:0004211,3.41e-11,15;UBERON:0009773,3.41e-11,15;UBERON:0001231,3.41e-11,15;UBERON:0001285,3.41e-11,15;UBERON:0007684,3.41e-11,15;UBERON:0004208,3.41e-11,15;UBERON:0006555,1.96e-10,16;UBERON:0004819,1.96e-10,16;UBERON:0001017,2.54e-10,81;UBERON:0001016,3.55e-10,89;UBERON:0000489,4.11e-10,31;UBERON:0000160,8.01e-10,17;UBERON:0001049,1.03e-09,56;UBERON:0005068,1.03e-09,56;UBERON:0006241,1.03e-09,56;UBERON:0007135,1.03e-09,56;UBERON:0010371,1.63e-09,104;UBERON:0002360,8.00e-09,2;UBERON:0000094,8.00e-09,2;UBERON:0010743,8.00e-09,2;UBERON:0005162,9.34e-09,2;UBERON:0000122,9.34e-09,2;UBERON:0003056,9.93e-09,61;UBERON:0003076,1.21e-08,15;UBERON:0003057,1.21e-08,15;UBERON:0011216,1.64e-08,223;UBERON:0001905,2.08e-08,2;UBERON:0002757,2.08e-08,2;UBERON:0010134,2.08e-08,2;UBERON:0005408,2.08e-08,2;UBERON:0001899,2.08e-08,2;UBERON:0010314,2.44e-08,132;UBERON:0000970,5.83e-08,21;UBERON:0002104,5.83e-08,21;UBERON:0002113,7.10e-08,26;UBERON:0003918,7.10e-08,26;UBERON:0011143,7.10e-08,26;UBERON:0005095,7.10e-08,26;UBERON:0007687,7.10e-08,26;UBERON:0001225,1.42e-07,12;UBERON:0008987,1.42e-07,12;UBERON:0004121,1.79e-07,171;UBERON:0000924,1.79e-07,171;UBERON:0006601,1.79e-07,171;UBERON:0000073,1.99e-07,53;UBERON:0002616,1.99e-07,53;UBERON:0000955,2.58e-07,68;UBERON:0006238,2.58e-07,68;UBERON:0004732,3.06e-07,13;UBERON:0000020,7.65e-07,24;UBERON:0001032,7.65e-07,24;UBERON:0004456,7.65e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.246301768349837,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0.111410456885174,0,0.221533894583621,0,0.25618263945135,0.260118695119756,0,0,0,0,0,0,0.453237370790265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,1.37528029272598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0.132529768321485,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0.491953754172454,0,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0.846016147141356,0,0.0920809889358963,0,0,0,3.15839729035188,0.847168708148562,1.56869953835371,1.46139224653261,0.316654886678627,0,0,0,0,0.270946437543853,0.501689773854853,2.54876273045038,5.81753206250107,1.11937377361089,0.219259876645935,0,2.05160100093111,2.62411716559765,5.85681110395745,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,2.24568648489864,0,0,0,0,0.23874448473769,0,0,0.994147647766298,0.281338832821026,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,1.43789361835723,0,0,0,0,0,1.93866549219044,1.57705766875147,0,0,0,1.44999915086959,0,0,0,0,0,0,0.885741385813839,0.120596438625408,0,1.87984741883082,0.591095237907095,5.26524953169534,0,0,0.692552326534174,0,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0.216388639742091,0,11.2341106919241,1.22206028986725,0,0,0,1.61762719153625,0,0.234264445725339,0,0.782658475728359,0,0.789168805698781,10.8891644443797,3.36680037793539,2.71702292402498,0,0,0,0,0,0,0,0,0.694238953340524,0.0979923974143777,0,0.34945333648406,0,0,0,0,0.193978032976839,0,1.12990370390266,0,0,1.13959432720582,0,0,12.1668207001431,0.799238438328521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0.408610218334727,0,0,0.415440338029185,0,0,0.364497339948148,0,2.20655980437755,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0.640724475406168,0.157204305099666,0.414239055347196,0,0,0,3.83004754662109,0,0,0,0,0,0,0.122026264901963,0.250381861413,2.86704597845036,6.32295593760058,1.73869928235874,0.553394539744923,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928067519756987,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,9.29773342777959,0,0,0,0,0,0,0,0.255788742607303,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0.918736432059601,0.513833800771676,0,0.478901577171454,0.205116364240755,1.51243017733031,0.760729777106397,1.13032951942296,7.13847101295772,0,0.11796972334774,0,0,0,0,0,0,0,3.12605604493237,0,0,0,0.540300676947157,0,0,0.443910671357348,0.546974809018219,0.548257766857182,0.496211178389294,0,0,3.21421101526972,1.3451348888753,0.606965604236632,0.682986574053893,0.0887023701626388,0,0,0.339848664884159,0.394636641377094,0,0,0.078493092850514,0,10.0897978792964,0,0,0,22.5151114156468,0.316027223465453,0,0,0,0,0.51215543128185,1.38251932362818,0.430227358820278,0,0,0,0,0,0,0,0,6.58356794904255,0,0.410651227424988,0,0,0,0,0,0,0,0,22.6120283256278,12.4578949487256,0,0,0,1.57046773691956,0.891139200981258,6.339835913751,0,0,0.0644578879735772,0,0.178553938605658,0,0.0802413666891683,0.730336388246517,0,0.716697915757256,0,1.01987235286372,1.30905207102113,7.40637576721561,0,0,0,0,0,0,0.203977659483963,0,0,0,0.151557396436479,0,0,0.413731983447581,0.426467963801962,0,0,0.0620747142958579,0.224263725161227,0,0,0.217716747896961,0,0.0673520530145875,1.72133292942423,0.332660356546013,0.162806537221949,0,0,16.1685363791856,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p1@SLC6A20 | |||
}} |
Revision as of 18:34, 21 January 2014
Short description: | p1@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A20_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_NM_020208, NM_022405, uc011bai.1, uc011baj.1_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | Q9NP91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.76e-13 | 10 |
nephron tubule epithelial cell | 6.76e-13 | 10 |
retinal pigment epithelial cell | 2.89e-12 | 3 |
brush border epithelial cell | 7.45e-12 | 3 |
kidney cortex tubule cell | 7.45e-12 | 3 |
epithelial cell of proximal tubule | 7.45e-12 | 3 |
epithelial cell of nephron | 3.41e-11 | 15 |
kidney cell | 9.19e-10 | 17 |
kidney epithelial cell | 9.19e-10 | 17 |
visual pigment cell | 2.63e-09 | 4 |
kidney cortical cell | 1.42e-07 | 12 |
renal cortical epithelial cell | 1.42e-07 | 12 |