Personal tools

FF:11476-119C9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007993
|DRA_sample_Accession=CAGE@DRS007993
|accession_numbers=CAGE;DRX008100;DRR008972;DRZ000397;DRZ001782
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0005406
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0005406
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002616
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002616
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000211
|is_a=EFO:0002091;;FF:0000211
|is_obsolete=
|is_obsolete=
|library_id=CNhs12069
|library_ids=CNhs12069
|library_ids=CNhs12069
|name=Adipocyte - perirenal, donor1
|name=Adipocyte - perirenal, donor1
Line 87: Line 89:
|top_motifs=FOXL1:3.08435209766;UFEwm:2.4517579077;HES1:2.34963564289;PAX1,9:2.20278119372;RXRA_VDR{dimer}:2.11985930584;ATF6:2.07184572369;IKZF1:2.04999687505;NKX2-2,8:2.03453528878;HMX1:1.95295293785;SMAD1..7,9:1.91388956398;GLI1..3:1.89659656913;NR3C1:1.84041617524;GZF1:1.83300933556;TAL1_TCF{3,4,12}:1.81161196963;HIF1A:1.77840163057;ALX4:1.757731729;TP53:1.65726705859;MYBL2:1.6077866037;SRF:1.55474159829;EBF1:1.44237406479;NKX3-1:1.43536513026;ZNF423:1.4219165407;MAFB:1.4179769271;XBP1:1.34020892631;TFAP4:1.33633316032;ZNF238:1.30763372414;KLF4:1.30636536186;TEAD1:1.29104427266;SPZ1:1.28551999603;HMGA1,2:1.25220541443;NFATC1..3:1.251382434;NKX2-1,4:1.2512059578;HSF1,2:1.20281959805;POU6F1:1.18857128843;EVI1:1.18085257241;ESR1:1.16850674794;EN1,2:1.14780401026;HAND1,2:1.02894228697;GCM1,2:1.00275473323;DBP:0.999474471006;AR:0.867340601038;TEF:0.860740370522;NANOG{mouse}:0.843755361616;NFE2L1:0.837502653951;AIRE:0.827120211186;HOX{A5,B5}:0.807173920134;LHX3,4:0.805550773966;PAX6:0.802696967158;TLX1..3_NFIC{dimer}:0.781945546009;NKX3-2:0.76915444358;NR6A1:0.758708639645;TBP:0.742152709112;ARID5B:0.73101817714;MTE{core}:0.716308363949;FOXO1,3,4:0.683747843689;ZIC1..3:0.658174736783;STAT2,4,6:0.643835650249;TBX4,5:0.55565299356;ESRRA:0.544690681528;FOXM1:0.54359844266;HOX{A4,D4}:0.504369970773;GFI1B:0.431766682075;bHLH_family:0.409916558588;MAZ:0.33393944298;GTF2I:0.33385888347;NFIX:0.307266081726;HOX{A6,A7,B6,B7}:0.304437388231;MTF1:0.259747818751;TFCP2:0.239127214436;ZBTB6:0.232518460318;VSX1,2:0.224341780776;TFAP2B:0.215190120735;ZNF148:0.211021301027;HLF:0.20911679653;RXR{A,B,G}:0.20794801451;PAX3,7:0.184939614315;MEF2{A,B,C,D}:0.174979556602;GTF2A1,2:0.166645603269;SOX5:0.162707584981;SOX17:0.138213794085;POU3F1..4:0.127252479399;HOXA9_MEIS1:0.116255858346;NHLH1,2:0.0980652524158;PATZ1:0.0760260952508;TFAP2{A,C}:0.0655455619223;PAX5:0.0473700739892;HNF4A_NR2F1,2:0.0333218606052;MYB:0.0197135517915;HIC1:0.00375849121711;PRDM1:-0.0181985576292;HNF1A:-0.0232604922293;T:-0.0376904642391;FOXA2:-0.0377263942061;NR5A1,2:-0.0623003933499;REST:-0.080350220837;GATA4:-0.0835487199773;TLX2:-0.0883361424921;PAX4:-0.0939668395907;NR1H4:-0.102641379939;ZBTB16:-0.131344777851;MYFfamily:-0.134914982839;CDC5L:-0.145358789777;XCPE1{core}:-0.154244707297;EP300:-0.160948194344;CEBPA,B_DDIT3:-0.204652771228;FOX{I1,J2}:-0.208113419356;MZF1:-0.222750393564;SNAI1..3:-0.229086801908;TGIF1:-0.235151474663;BACH2:-0.256599337296;ELK1,4_GABP{A,B1}:-0.300403420465;STAT5{A,B}:-0.304834003907;ZNF384:-0.317716837281;RFX1:-0.319467111885;MED-1{core}:-0.330213063841;ADNP_IRX_SIX_ZHX:-0.339524629418;IRF1,2:-0.342100314163;ATF2:-0.350456939539;LMO2:-0.350904356257;NFE2L2:-0.362395050166;FOX{D1,D2}:-0.370156525425;ZEB1:-0.404640067778;RREB1:-0.426302242916;POU5F1:-0.426910325073;FOS_FOS{B,L1}_JUN{B,D}:-0.433338347905;ZNF143:-0.448083899941;RUNX1..3:-0.448618919745;AHR_ARNT_ARNT2:-0.451049812479;SOX2:-0.474389797276;RORA:-0.476036178099;ONECUT1,2:-0.499191289515;NFKB1_REL_RELA:-0.511636126985;FOSL2:-0.512887316663;CREB1:-0.516036557514;FOXP3:-0.51922882677;SREBF1,2:-0.54424923117;FOX{F1,F2,J1}:-0.546284161441;ATF4:-0.582754045499;NFIL3:-0.61748759014;NFE2:-0.621010122144;SPI1:-0.650643839024;ETS1,2:-0.656899068233;LEF1_TCF7_TCF7L1,2:-0.659614277124;CDX1,2,4:-0.660920029814;DMAP1_NCOR{1,2}_SMARC:-0.691775753533;MYOD1:-0.693621200512;PAX2:-0.709465151414;SP1:-0.74960605318;PITX1..3:-0.765640173262;PDX1:-0.780054854384;JUN:-0.805450305934;NRF1:-0.819087176048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.832816452473;GATA6:-0.837046594768;IRF7:-0.84971190088;SPIB:-0.853695079834;ATF5_CREB3:-0.881644069155;YY1:-0.886345535983;PPARG:-0.891194463925;POU1F1:-0.896399881852;TOPORS:-0.899069568615;PRRX1,2:-0.901249915426;FOXP1:-0.909054231901;CRX:-0.943703731547;ELF1,2,4:-0.994738922376;STAT1,3:-1.06734085424;ZFP161:-1.07957719814;EGR1..3:-1.08328498087;IKZF2:-1.08381085488;RFX2..5_RFXANK_RFXAP:-1.09457285649;OCT4_SOX2{dimer}:-1.09928522469;BPTF:-1.10817612703;NKX2-3_NKX2-5:-1.12230861368;GFI1:-1.12656483289;FOXD3:-1.18408642309;BREu{core}:-1.18719040386;SOX{8,9,10}:-1.23320332839;RBPJ:-1.27974549149;NKX6-1,2:-1.33377270638;PBX1:-1.36898883629;FOXN1:-1.41223187962;E2F1..5:-1.41298984351;PAX8:-1.41810876278;NFY{A,B,C}:-1.47240059792;CUX2:-1.47659925113;TFDP1:-1.62269761962;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6715990649;FOXQ1:-1.67398909534;POU2F1..3:-1.86830560508;NANOG:-1.96289292233;HBP1_HMGB_SSRP1_UBTF:-2.00589461249;ALX1:-2.12908258119
|top_motifs=FOXL1:3.08435209766;UFEwm:2.4517579077;HES1:2.34963564289;PAX1,9:2.20278119372;RXRA_VDR{dimer}:2.11985930584;ATF6:2.07184572369;IKZF1:2.04999687505;NKX2-2,8:2.03453528878;HMX1:1.95295293785;SMAD1..7,9:1.91388956398;GLI1..3:1.89659656913;NR3C1:1.84041617524;GZF1:1.83300933556;TAL1_TCF{3,4,12}:1.81161196963;HIF1A:1.77840163057;ALX4:1.757731729;TP53:1.65726705859;MYBL2:1.6077866037;SRF:1.55474159829;EBF1:1.44237406479;NKX3-1:1.43536513026;ZNF423:1.4219165407;MAFB:1.4179769271;XBP1:1.34020892631;TFAP4:1.33633316032;ZNF238:1.30763372414;KLF4:1.30636536186;TEAD1:1.29104427266;SPZ1:1.28551999603;HMGA1,2:1.25220541443;NFATC1..3:1.251382434;NKX2-1,4:1.2512059578;HSF1,2:1.20281959805;POU6F1:1.18857128843;EVI1:1.18085257241;ESR1:1.16850674794;EN1,2:1.14780401026;HAND1,2:1.02894228697;GCM1,2:1.00275473323;DBP:0.999474471006;AR:0.867340601038;TEF:0.860740370522;NANOG{mouse}:0.843755361616;NFE2L1:0.837502653951;AIRE:0.827120211186;HOX{A5,B5}:0.807173920134;LHX3,4:0.805550773966;PAX6:0.802696967158;TLX1..3_NFIC{dimer}:0.781945546009;NKX3-2:0.76915444358;NR6A1:0.758708639645;TBP:0.742152709112;ARID5B:0.73101817714;MTE{core}:0.716308363949;FOXO1,3,4:0.683747843689;ZIC1..3:0.658174736783;STAT2,4,6:0.643835650249;TBX4,5:0.55565299356;ESRRA:0.544690681528;FOXM1:0.54359844266;HOX{A4,D4}:0.504369970773;GFI1B:0.431766682075;bHLH_family:0.409916558588;MAZ:0.33393944298;GTF2I:0.33385888347;NFIX:0.307266081726;HOX{A6,A7,B6,B7}:0.304437388231;MTF1:0.259747818751;TFCP2:0.239127214436;ZBTB6:0.232518460318;VSX1,2:0.224341780776;TFAP2B:0.215190120735;ZNF148:0.211021301027;HLF:0.20911679653;RXR{A,B,G}:0.20794801451;PAX3,7:0.184939614315;MEF2{A,B,C,D}:0.174979556602;GTF2A1,2:0.166645603269;SOX5:0.162707584981;SOX17:0.138213794085;POU3F1..4:0.127252479399;HOXA9_MEIS1:0.116255858346;NHLH1,2:0.0980652524158;PATZ1:0.0760260952508;TFAP2{A,C}:0.0655455619223;PAX5:0.0473700739892;HNF4A_NR2F1,2:0.0333218606052;MYB:0.0197135517915;HIC1:0.00375849121711;PRDM1:-0.0181985576292;HNF1A:-0.0232604922293;T:-0.0376904642391;FOXA2:-0.0377263942061;NR5A1,2:-0.0623003933499;REST:-0.080350220837;GATA4:-0.0835487199773;TLX2:-0.0883361424921;PAX4:-0.0939668395907;NR1H4:-0.102641379939;ZBTB16:-0.131344777851;MYFfamily:-0.134914982839;CDC5L:-0.145358789777;XCPE1{core}:-0.154244707297;EP300:-0.160948194344;CEBPA,B_DDIT3:-0.204652771228;FOX{I1,J2}:-0.208113419356;MZF1:-0.222750393564;SNAI1..3:-0.229086801908;TGIF1:-0.235151474663;BACH2:-0.256599337296;ELK1,4_GABP{A,B1}:-0.300403420465;STAT5{A,B}:-0.304834003907;ZNF384:-0.317716837281;RFX1:-0.319467111885;MED-1{core}:-0.330213063841;ADNP_IRX_SIX_ZHX:-0.339524629418;IRF1,2:-0.342100314163;ATF2:-0.350456939539;LMO2:-0.350904356257;NFE2L2:-0.362395050166;FOX{D1,D2}:-0.370156525425;ZEB1:-0.404640067778;RREB1:-0.426302242916;POU5F1:-0.426910325073;FOS_FOS{B,L1}_JUN{B,D}:-0.433338347905;ZNF143:-0.448083899941;RUNX1..3:-0.448618919745;AHR_ARNT_ARNT2:-0.451049812479;SOX2:-0.474389797276;RORA:-0.476036178099;ONECUT1,2:-0.499191289515;NFKB1_REL_RELA:-0.511636126985;FOSL2:-0.512887316663;CREB1:-0.516036557514;FOXP3:-0.51922882677;SREBF1,2:-0.54424923117;FOX{F1,F2,J1}:-0.546284161441;ATF4:-0.582754045499;NFIL3:-0.61748759014;NFE2:-0.621010122144;SPI1:-0.650643839024;ETS1,2:-0.656899068233;LEF1_TCF7_TCF7L1,2:-0.659614277124;CDX1,2,4:-0.660920029814;DMAP1_NCOR{1,2}_SMARC:-0.691775753533;MYOD1:-0.693621200512;PAX2:-0.709465151414;SP1:-0.74960605318;PITX1..3:-0.765640173262;PDX1:-0.780054854384;JUN:-0.805450305934;NRF1:-0.819087176048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.832816452473;GATA6:-0.837046594768;IRF7:-0.84971190088;SPIB:-0.853695079834;ATF5_CREB3:-0.881644069155;YY1:-0.886345535983;PPARG:-0.891194463925;POU1F1:-0.896399881852;TOPORS:-0.899069568615;PRRX1,2:-0.901249915426;FOXP1:-0.909054231901;CRX:-0.943703731547;ELF1,2,4:-0.994738922376;STAT1,3:-1.06734085424;ZFP161:-1.07957719814;EGR1..3:-1.08328498087;IKZF2:-1.08381085488;RFX2..5_RFXANK_RFXAP:-1.09457285649;OCT4_SOX2{dimer}:-1.09928522469;BPTF:-1.10817612703;NKX2-3_NKX2-5:-1.12230861368;GFI1:-1.12656483289;FOXD3:-1.18408642309;BREu{core}:-1.18719040386;SOX{8,9,10}:-1.23320332839;RBPJ:-1.27974549149;NKX6-1,2:-1.33377270638;PBX1:-1.36898883629;FOXN1:-1.41223187962;E2F1..5:-1.41298984351;PAX8:-1.41810876278;NFY{A,B,C}:-1.47240059792;CUX2:-1.47659925113;TFDP1:-1.62269761962;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6715990649;FOXQ1:-1.67398909534;POU2F1..3:-1.86830560508;NANOG:-1.96289292233;HBP1_HMGB_SSRP1_UBTF:-2.00589461249;ALX1:-2.12908258119
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007993
|accession_numbers=DRX008100;DRR008972;DRZ000397;DRZ001782;CAGE
|library_id=CNhs12069
}}
}}

Revision as of 15:35, 17 October 2013


Name:Adipocyte - perirenal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12069
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.8

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007993
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12069 CAGE DRX008100 DRR008972
Accession ID Hg19

Library idBAMCTSS
CNhs12069 DRZ000397 DRZ001782
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.465
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.245
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.272
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.247
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0568
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.291
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.418
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.438
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.852
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.729
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.71
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.762
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.795
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.598
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.438
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.438
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.877
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.796
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.558
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.988
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.988
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12069

Jaspar motifP-value
MA0002.20.561
MA0003.10.226
MA0004.10.551
MA0006.10.381
MA0007.10.177
MA0009.10.613
MA0014.10.715
MA0017.10.745
MA0018.22.94019e-5
MA0019.10.557
MA0024.14.58037e-5
MA0025.10.00148
MA0027.10.704
MA0028.10.0556
MA0029.10.545
MA0030.10.0698
MA0031.10.183
MA0035.20.148
MA0038.10.00384
MA0039.20.0705
MA0040.10.263
MA0041.10.597
MA0042.10.762
MA0043.18.83031e-4
MA0046.10.226
MA0047.20.845
MA0048.10.581
MA0050.14.80871e-5
MA0051.10.00933
MA0052.10.153
MA0055.10.876
MA0057.10.186
MA0058.10.306
MA0059.10.402
MA0060.11.16179e-9
MA0061.10.392
MA0062.24.2275e-6
MA0065.20.501
MA0066.10.0827
MA0067.10.00971
MA0068.10.41
MA0069.10.158
MA0070.10.63
MA0071.10.358
MA0072.11
MA0073.10.869
MA0074.10.456
MA0076.10.00223
MA0077.10.136
MA0078.10.525
MA0079.20.548
MA0080.22.72753e-6
MA0081.10.0194
MA0083.10.016
MA0084.10.918
MA0087.10.791
MA0088.10.768
MA0090.12.0108e-4
MA0091.10.0228
MA0092.10.014
MA0093.10.414
MA0099.23.25273e-4
MA0100.10.278
MA0101.10.00715
MA0102.20.138
MA0103.10.369
MA0104.20.333
MA0105.10.465
MA0106.10.0266
MA0107.10.00833
MA0108.20.107
MA0111.10.812
MA0112.26.09655e-5
MA0113.10.112
MA0114.10.585
MA0115.10.0165
MA0116.10.049
MA0117.10.521
MA0119.10.0292
MA0122.10.777
MA0124.10.0167
MA0125.10.144
MA0131.10.166
MA0135.10.385
MA0136.12.54449e-10
MA0137.20.404
MA0138.20.148
MA0139.10.368
MA0140.10.67
MA0141.10.453
MA0142.10.217
MA0143.10.541
MA0144.10.366
MA0145.10.202
MA0146.10.455
MA0147.10.609
MA0148.10.585
MA0149.10.963
MA0150.10.0652
MA0152.10.0555
MA0153.10.529
MA0154.10.0647
MA0155.10.238
MA0156.12.61994e-7
MA0157.10.972
MA0159.10.0103
MA0160.10.489
MA0162.10.0177
MA0163.13.7617e-4
MA0164.10.804
MA0258.10.0168
MA0259.10.927



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12069

Novel motifP-value
10.42
100.447
1000.886
1010.314
1020.187
1030.0857
1040.942
1050.162
1060.056
1070.0288
1080.249
1090.163
110.347
1100.237
1110.537
1120.141
1130.327
1140.104
1150.0221
1160.0692
1170.88
1180.438
1190.598
120.37
1200.241
1210.155
1220.348
1230.398
1240.915
1250.606
1260.994
1270.553
1280.175
1290.701
130.87
1300.606
1310.569
1320.46
1330.285
1340.692
1350.365
1360.637
1370.486
1380.906
1390.0775
140.522
1400.942
1410.649
1420.841
1430.466
1440.865
1450.911
1460.849
1470.128
1480.516
1492.5048e-4
150.556
1500.738
1510.483
1520.0854
1530.613
1540.674
1550.157
1560.558
1570.685
1580.122
1590.652
160.0115
1600.137
1610.755
1620.918
1630.567
1640.149
1650.924
1660.103
1670.829
1680.673
1690.0107
170.203
180.111
190.00932
20.319
200.599
210.91
220.106
230.0595
240.45
250.976
260.574
270.197
280.308
290.447
30.312
300.593
310.317
322.2671e-12
330.876
340.811
350.422
360.712
370.104
380.688
390.235
40.864
400.422
410.957
420.757
430.11
440.0653
450.758
460.191
470.452
480.591
490.357
50.422
500.725
510.73
520.59
530.361
540.645
550.353
560.91
570.375
580.949
590.0396
60.624
600.245
610.694
620.37
630.141
640.495
650.148
660.124
670.381
680.813
690.264
70.779
700.0232
710.256
720.626
730.0457
740.162
750.43
760.935
770.024
780.797
790.0106
80.0756
800.832
810.333
820.0521
830.974
840.165
850.00616
860.48
870.646
880.152
890.0101
90.573
900.661
910.275
920.0191
930.312
940.281
950.308
960.895
970.34
980.256
990.056



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12069


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002616 (perirenal adipocyte cell)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0005406 (perirenal fat)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000211 (human perirenal adipocyte cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11476-119C9&oldid=3077995"