FFCP PHASE1:Hg19::chr9:139874355..139874367,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5730|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9592|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000462514_5end|coexpression_cluster_id=C4|description=CAGE_peak_13_at_PTGDS_5end|id=chr9:139874355..139874367,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006241;5.98e-21;3!UBERON:0003057;5.98e-21;3!UBERON:0006601;2.19e-12;82!UBERON:0005425;1.05e-08;1!UBERON:0006222;1.81e-08;1!UBERON:0004874;3.96e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.01e-52!57;UBERON:0005068!6.01e-52!57;UBERON:0006241!6.01e-52!57;UBERON:0007135!6.01e-52!57;UBERON:0002616!2.04e-46!59;UBERON:0005743!8.03e-46!86;UBERON:0001017!2.73e-44!82;UBERON:0007023!1.39e-42!115;UBERON:0000073!1.67e-42!94;UBERON:0001016!1.67e-42!94;UBERON:0000955!4.17e-42!69;UBERON:0006238!4.17e-42!69;UBERON:0002780!5.14e-40!41;UBERON:0001890!5.14e-40!41;UBERON:0006240!5.14e-40!41;UBERON:0003075!7.00e-40!86;UBERON:0007284!7.00e-40!86;UBERON:0003080!7.19e-39!42;UBERON:0002346!1.52e-37!90;UBERON:0002020!3.27e-36!34;UBERON:0003528!3.27e-36!34;UBERON:0001893!9.81e-36!34;UBERON:0002791!4.04e-34!33;UBERON:0001869!8.45e-32!32;UBERON:0003056!6.69e-28!61;UBERON:0000033!1.72e-22!123;UBERON:0002619!1.80e-22!22;UBERON:0000153!3.45e-22!129;UBERON:0007811!3.45e-22!129;UBERON:0001950!1.08e-21!20;UBERON:0002308!7.29e-21!9;UBERON:0000125!7.29e-21!9;UBERON:0002420!7.81e-21!9;UBERON:0007245!7.81e-21!9;UBERON:0010009!7.81e-21!9;UBERON:0010011!7.81e-21!9;UBERON:0000454!7.81e-21!9;UBERON:0000956!2.42e-19!25;UBERON:0000203!2.42e-19!25;UBERON:0004121!6.11e-19!169;UBERON:0000924!3.34e-18!173;UBERON:0006601!3.34e-18!173;UBERON:0009663!1.55e-16!7;UBERON:0002298!6.67e-14!8;UBERON:0003076!9.55e-14!15;UBERON:0003057!9.55e-14!15;UBERON:0000025!5.41e-11!194;UBERON:0001871!1.64e-10!7;UBERON:0004732!2.70e-10!13;UBERON:0000475!5.91e-10!365;UBERON:0000369!1.13e-09!4;UBERON:0002435!1.13e-09!4;UBERON:0000204!1.13e-09!4;UBERON:0010082!1.13e-09!4;UBERON:0000200!2.03e-09!6;UBERON:0000483!1.17e-08!309;UBERON:0004733!1.68e-08!12;UBERON:0002028!1.68e-08!12;UBERON:0007277!1.68e-08!12;UBERON:0000119!1.89e-08!312;UBERON:0006331!2.41e-08!3;UBERON:0005383!3.59e-08!3;UBERON:0005382!3.59e-08!3;UBERON:0000064!3.93e-08!219;UBERON:0002771!3.94e-08!3;UBERON:0002240!4.53e-08!3;UBERON:0002021!6.24e-08!5;UBERON:0000988!7.51e-08!3;UBERON:0004111!7.58e-08!241;UBERON:0000349!9.21e-08!5;UBERON:0001896!1.41e-07!3;UBERON:0005290!1.41e-07!3;UBERON:0010096!1.41e-07!3;UBERON:0001872!1.78e-07!5|ontology_enrichment_uberon_v019=UBERON:0003528;3.20e-47;34!UBERON:0002020;3.20e-47;34!UBERON:0002791;2.65e-45;32!UBERON:0001893;4.30e-41;34!UBERON:0001869;3.97e-40;32!UBERON:0002780;1.66e-38;41!UBERON:0001890;1.66e-38;41!UBERON:0000125;9.59e-38;9!UBERON:0002308;9.59e-38;9!UBERON:0002420;1.75e-37;9!UBERON:0007245;1.75e-37;9!UBERON:0010009;1.75e-37;9!UBERON:0010011;1.75e-37;9!UBERON:0000454;1.75e-37;9!UBERON:0002619;4.02e-34;22!UBERON:0001950;6.97e-31;20!UBERON:0000073;3.67e-30;53!UBERON:0002616;3.67e-30;53!UBERON:0000956;5.74e-30;25!UBERON:0000203;5.74e-30;25!UBERON:0009663;2.01e-25;7!UBERON:0002240;5.98e-21;3!UBERON:0005174;5.98e-21;3!UBERON:0001137;5.98e-21;3!UBERON:0001017;1.52e-20;75!UBERON:0001016;5.98e-19;83!UBERON:0000955;1.81e-17;68!UBERON:0001871;9.87e-16;6!UBERON:0001875;1.90e-15;2!UBERON:0006514;1.90e-15;2!UBERON:0001897;4.46e-15;2!UBERON:0010225;4.46e-15;2!UBERON:0002148;6.80e-15;2!UBERON:0006331;6.80e-15;2!UBERON:0009662;6.80e-15;2!UBERON:0002771;1.46e-14;2!UBERON:0001876;1.46e-14;2!UBERON:0002021;2.61e-13;5!UBERON:0000349;5.28e-13;5!UBERON:0002298;6.34e-11;6!UBERON:0007023;6.89e-11;114!UBERON:0000200;9.22e-11;6!UBERON:0005383;2.65e-10;3!UBERON:0005382;2.65e-10;3!UBERON:0000988;3.11e-10;3!UBERON:0001894;1.19e-09;7!UBERON:0011216;3.63e-09;132!UBERON:0004732;8.25e-09;13!UBERON:0002038;9.78e-09;1!UBERON:0009661;9.78e-09;1!UBERON:0002950;9.78e-09;1!UBERON:0001891;9.78e-09;1!UBERON:0000941;1.05e-08;1!UBERON:0001785;1.05e-08;1!UBERON:0002464;1.05e-08;1!UBERON:0004904;1.05e-08;1!UBERON:0001021;1.05e-08;1!UBERON:0001874;3.96e-08;1!UBERON:0003112;3.96e-08;1!UBERON:0000989;3.96e-08;1!UBERON:0008811;3.96e-08;1!UBERON:0011158;3.96e-08;1!UBERON:0003128;3.96e-08;1!UBERON:0001703;3.96e-08;1!UBERON:0002241;3.96e-08;1!UBERON:0002784;5.63e-08;4!UBERON:0000369;6.14e-08;4!UBERON:0002435;6.14e-08;4!UBERON:0000204;6.14e-08;4!UBERON:0010314;3.00e-07;132|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.30e-71,56;UBERON:0005068,1.30e-71,56;UBERON:0006241,1.30e-71,56;UBERON:0007135,1.30e-71,56;UBERON:0003528,8.42e-61,34;UBERON:0002020,8.42e-61,34;UBERON:0000073,2.86e-58,53;UBERON:0002616,2.86e-58,53;UBERON:0002780,2.93e-56,41;UBERON:0001890,2.93e-56,41;UBERON:0003080,2.93e-56,41;UBERON:0006240,2.93e-56,41;UBERON:0003075,3.71e-52,82;UBERON:0007284,3.71e-52,82;UBERON:0002791,7.10e-51,32;UBERON:0002346,1.47e-49,86;UBERON:0001017,7.66e-48,81;UBERON:0001893,8.56e-48,34;UBERON:0001016,1.26e-46,89;UBERON:0001869,2.18e-44,32;UBERON:0000955,4.93e-44,68;UBERON:0006238,4.93e-44,68;UBERON:0003056,2.77e-41,61;UBERON:0010371,2.61e-40,104;UBERON:0000125,8.43e-38,9;UBERON:0002308,8.43e-38,9;UBERON:0002420,9.93e-38,9;UBERON:0007245,9.93e-38,9;UBERON:0010009,9.93e-38,9;UBERON:0010011,9.93e-38,9;UBERON:0000454,9.93e-38,9;UBERON:0007023,9.18e-37,114;UBERON:0002619,3.07e-34,22;UBERON:0010314,1.56e-33,132;UBERON:0001950,5.41e-31,20;UBERON:0000956,4.52e-30,25;UBERON:0000203,4.52e-30,25;UBERON:0009663,1.46e-25,7;UBERON:0004121,1.52e-22,171;UBERON:0000924,1.52e-22,171;UBERON:0006601,1.52e-22,171;UBERON:0002240,6.21e-21,3;UBERON:0005174,6.21e-21,3;UBERON:0001137,6.21e-21,3;UBERON:0000025,4.77e-18,192;UBERON:0011216,9.66e-18,223;UBERON:0003076,6.33e-16,15;UBERON:0003057,6.33e-16,15;UBERON:0001871,6.71e-16,6;UBERON:0001875,1.91e-15,2;UBERON:0006514,1.91e-15,2;UBERON:0001897,3.61e-15,2;UBERON:0010225,3.61e-15,2;UBERON:0002148,9.02e-15,2;UBERON:0006331,9.02e-15,2;UBERON:0009662,9.02e-15,2;UBERON:0002771,9.67e-15,2;UBERON:0001876,1.11e-14,2;UBERON:0004111,1.52e-13,240;UBERON:0002021,3.29e-13,5;UBERON:0000349,4.40e-13,5;UBERON:0002298,6.25e-11,6;UBERON:0000200,7.66e-11,6;UBERON:0000483,9.35e-11,306;UBERON:0000119,1.32e-10,309;UBERON:0005383,1.96e-10,3;UBERON:0005382,1.96e-10,3;UBERON:0000988,3.75e-10,3;UBERON:0001894,1.14e-09,7;UBERON:0006222,1.14e-09,7;UBERON:0004732,8.18e-09,13;UBERON:0002038,9.79e-09,1;UBERON:0009661,9.79e-09,1;UBERON:0002950,9.79e-09,1;UBERON:0001891,9.79e-09,1;UBERON:0009616,9.79e-09,1;UBERON:0010286,9.79e-09,1;UBERON:0000941,1.05e-08,1;UBERON:0001785,1.05e-08,1;UBERON:0002464,1.05e-08,1;UBERON:0004904,1.05e-08,1;UBERON:0001021,1.05e-08,1;UBERON:0003902,1.05e-08,1;UBERON:0005425,1.05e-08,1;UBERON:0001874,2.50e-08,1;UBERON:0000989,4.41e-08,1;UBERON:0008811,4.41e-08,1;UBERON:0006258,4.41e-08,1;UBERON:0005876,4.41e-08,1;UBERON:0004874,4.41e-08,1;UBERON:0000369,4.90e-08,4;UBERON:0002435,4.90e-08,4;UBERON:0000204,4.90e-08,4;UBERON:0010082,4.90e-08,4;UBERON:0002784,5.08e-08,4;UBERON:0003112,6.24e-08,1;UBERON:0011158,6.24e-08,1;UBERON:0003128,6.24e-08,1;UBERON:0001703,6.24e-08,1;UBERON:0002241,6.24e-08,1;UBERON:0004761,6.24e-08,1;UBERON:0009617,6.24e-08,1|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0.953962497221368,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,1.40669416410513,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.463840490809256,0,0,0,0,0,0,0,0,0,0,3.54296554325536,0.844175070377856,0,0.221158519862449,0,0.219385397153973,0,0,0,0.341826167541004,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.808813595768125,0,2.10838001152805,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60252173225874,3.28572909340783,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17925449778521,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42211251997706,2.11572162788304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70836770862748,1.502291168478,0.573409195690071,1.66393577305278,0.248385611765534,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52084279766904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,4.25089728976755,2.55414174491442,1.02558182120378,0,0.207471757392654,1.13032951942296,5.71077681036618,0,0,0,0,0,0,0.198916222116275,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9592 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000462514_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_13_at_PTGDS_5end | |||
|id=chr9:139874355..139874367,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;5.98e-21;3!UBERON:0003057;5.98e-21;3!UBERON:0006601;2.19e-12;82!UBERON:0005425;1.05e-08;1!UBERON:0006222;1.81e-08;1!UBERON:0004874;3.96e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p13@PTGDS | |||
}} |
Revision as of 08:17, 14 September 2013
Short description: | p13@PTGDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_PTGDS_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 0bp_to_ENST00000462514_5end |
EntrezGene: | PTGDS |
HGNC: | 9592 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.