FFCP PHASE1:Hg19::chr6:80340818..80340825,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83699|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15567|TSSclassifier=S|UniProt=Q9UJC5|association_with_transcript=-174bp_to_ENST00000369838,NM_031469,uc003piz.1_5end|coexpression_cluster_id=C190|description=CAGE_peak_7_at_SH3BGRL2_5end|id=chr6:80340818..80340825,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000182;7.32e-10;12!CL:0002563;1.81e-08;4|ontology_enrichment_celltype_v019_2=CL:0000182,7.50e-10,12;CL:0002563,1.78e-08,4;CL:0000223,4.73e-07,58|ontology_enrichment_development_v019=UBERON:0009497;1.74e-26;13!UBERON:0004161;3.75e-23;11!UBERON:0003104;2.37e-13;31!UBERON:0006595;5.06e-12;86!UBERON:0001045;8.05e-09;1!UBERON:0006242;1.47e-08;1!UBERON:0001041;3.06e-08;30|ontology_enrichment_disease=DOID:305!1.10e-07!106|ontology_enrichment_disease_v019=DOID:3119;1.63e-08;14!DOID:299;3.33e-07;25|ontology_enrichment_disease_v019_2=DOID:3119,1.58e-08,14;DOID:299,3.24e-07,25|ontology_enrichment_uberon=UBERON:0004921!3.22e-24!129;UBERON:0004185!3.22e-24!129;UBERON:0001007!5.40e-23!155;UBERON:0001555!5.40e-23!155;UBERON:0007026!5.40e-23!155;UBERON:0004119!3.72e-21!169;UBERON:0000925!3.72e-21!169;UBERON:0006595!3.72e-21!169;UBERON:0000077!2.71e-18!130;UBERON:0005409!3.19e-17!35;UBERON:0000160!1.71e-15!27;UBERON:0007023!2.21e-15!115;UBERON:0003929!3.85e-13!54;UBERON:0005911!5.28e-13!82;UBERON:0009497!4.42e-12!25;UBERON:0000015!4.42e-12!25;UBERON:0002423!4.42e-12!25;UBERON:0006235!4.42e-12!25;UBERON:0004161!4.42e-12!25;UBERON:0000059!2.56e-11!11;UBERON:0001046!3.01e-11!19;UBERON:0001041!5.93e-10!98;UBERON:0009856!1.24e-09!26;UBERON:0000481!1.73e-09!347;UBERON:0009854!2.94e-09!23;UBERON:0002294!5.07e-09!7;UBERON:0001173!5.07e-09!7;UBERON:0004912!5.07e-09!7;UBERON:0004907!6.82e-09!5;UBERON:0003104!2.91e-08!238;UBERON:0009142!2.91e-08!238;UBERON:0007499!3.02e-08!25;UBERON:0002110!3.30e-08!3;UBERON:0006242!3.30e-08!3;UBERON:0008835!7.83e-08!22;UBERON:0003894!7.83e-08!22;UBERON:0000466!1.66e-07!126;UBERON:0005177!1.88e-07!107;UBERON:0001155!1.96e-07!9;UBERON:0000062!8.96e-07!511|ontology_enrichment_uberon_v019=UBERON:0005409;1.65e-61;22!UBERON:0000160;6.08e-58;17!UBERON:0004921;7.62e-37;33!UBERON:0000059;9.10e-33;11!UBERON:0002108;2.86e-24;4!UBERON:0004907;6.03e-24;5!UBERON:0001155;5.81e-21;9!UBERON:0002423;2.12e-17;25!UBERON:0001052;2.95e-17;4!UBERON:0001007;2.53e-14;81!UBERON:0001555;9.38e-13;54!UBERON:0002114;9.58e-11;2!UBERON:0002294;7.03e-10;7!UBERON:0001173;7.03e-10;7!UBERON:0002107;2.23e-09;19!UBERON:0006925;2.23e-09;19!UBERON:0001154;8.05e-09;1!UBERON:0001153;8.05e-09;1!UBERON:0009854;8.05e-09;1!UBERON:0001242;1.81e-08;4!UBERON:0001262;1.81e-08;4!UBERON:0004786;1.81e-08;4!UBERON:0004808;1.81e-08;4!UBERON:0001277;1.81e-08;4!UBERON:0000996;1.99e-08;1!UBERON:0004913;1.99e-08;1!UBERON:0003703;1.99e-08;1!UBERON:0001174;1.99e-08;1!UBERON:0004914;1.99e-08;1!UBERON:0002394;3.46e-08;4!UBERON:0003928;3.46e-08;4!UBERON:0000945;4.87e-07;5!UBERON:0010039;4.87e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.93e-58,17;UBERON:0005409,3.85e-54,25;UBERON:0000059,8.88e-33,11;UBERON:0004921,5.41e-29,118;UBERON:0001007,3.46e-25,145;UBERON:0001555,3.46e-25,145;UBERON:0007026,3.46e-25,145;UBERON:0002108,2.78e-24,4;UBERON:0004907,6.04e-24,5;UBERON:0004119,1.84e-22,160;UBERON:0000925,1.84e-22,160;UBERON:0006595,1.84e-22,160;UBERON:0001155,5.57e-21,9;UBERON:0009854,4.45e-19,23;UBERON:0009497,2.07e-17,25;UBERON:0000015,2.07e-17,25;UBERON:0002423,2.07e-17,25;UBERON:0006235,2.07e-17,25;UBERON:0004161,2.07e-17,25;UBERON:0001052,2.87e-17,4;UBERON:0009856,9.29e-17,26;UBERON:0008835,2.58e-15,22;UBERON:0003894,2.58e-15,22;UBERON:0011216,8.88e-15,223;UBERON:0003929,1.85e-14,54;UBERON:0001046,1.57e-13,19;UBERON:0007499,2.19e-13,25;UBERON:0002114,9.35e-11,2;UBERON:0002107,2.25e-09,19;UBERON:0006925,2.25e-09,19;UBERON:0008836,2.25e-09,19;UBERON:0005911,6.90e-09,82;UBERON:0001154,8.36e-09,1;UBERON:0001153,8.36e-09,1;UBERON:0001045,8.36e-09,1;UBERON:0001242,1.78e-08,4;UBERON:0001262,1.78e-08,4;UBERON:0004786,1.78e-08,4;UBERON:0004808,1.78e-08,4;UBERON:0001277,1.78e-08,4;UBERON:0004913,1.91e-08,1;UBERON:0003703,1.91e-08,1;UBERON:0001174,1.91e-08,1;UBERON:0004914,1.91e-08,1;UBERON:0000996,2.06e-08,1;UBERON:0002294,8.30e-08,9;UBERON:0001173,8.30e-08,9;UBERON:0004912,8.30e-08,9;UBERON:0001041,9.47e-07,87|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,16.7264276418634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=83699 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15567 | |||
|TSSclassifier=S | |||
|UniProt=Q9UJC5 | |||
|association_with_transcript=-174bp_to_ENST00000369838,NM_031469,uc003piz.1_5end | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_7_at_SH3BGRL2_5end | |||
|id=chr6:80340818..80340825,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000182;7.32e-10;12!CL:0002563;1.81e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,7.50e-10,12;CL:0002563,1.78e-08,4;CL:0000223,4.73e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0009497;1.74e-26;13!UBERON:0004161;3.75e-23;11!UBERON:0003104;2.37e-13;31!UBERON:0006595;5.06e-12;86!UBERON:0001045;8.05e-09;1!UBERON:0006242;1.47e-08;1!UBERON:0001041;3.06e-08;30 | |||
|ontology_enrichment_disease=DOID:305!1.10e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.63e-08;14!DOID:299;3.33e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,1.58e-08,14;DOID:299,3.24e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004921!3.22e-24!129;UBERON:0004185!3.22e-24!129;UBERON:0001007!5.40e-23!155;UBERON:0001555!5.40e-23!155;UBERON:0007026!5.40e-23!155;UBERON:0004119!3.72e-21!169;UBERON:0000925!3.72e-21!169;UBERON:0006595!3.72e-21!169;UBERON:0000077!2.71e-18!130;UBERON:0005409!3.19e-17!35;UBERON:0000160!1.71e-15!27;UBERON:0007023!2.21e-15!115;UBERON:0003929!3.85e-13!54;UBERON:0005911!5.28e-13!82;UBERON:0009497!4.42e-12!25;UBERON:0000015!4.42e-12!25;UBERON:0002423!4.42e-12!25;UBERON:0006235!4.42e-12!25;UBERON:0004161!4.42e-12!25;UBERON:0000059!2.56e-11!11;UBERON:0001046!3.01e-11!19;UBERON:0001041!5.93e-10!98;UBERON:0009856!1.24e-09!26;UBERON:0000481!1.73e-09!347;UBERON:0009854!2.94e-09!23;UBERON:0002294!5.07e-09!7;UBERON:0001173!5.07e-09!7;UBERON:0004912!5.07e-09!7;UBERON:0004907!6.82e-09!5;UBERON:0003104!2.91e-08!238;UBERON:0009142!2.91e-08!238;UBERON:0007499!3.02e-08!25;UBERON:0002110!3.30e-08!3;UBERON:0006242!3.30e-08!3;UBERON:0008835!7.83e-08!22;UBERON:0003894!7.83e-08!22;UBERON:0000466!1.66e-07!126;UBERON:0005177!1.88e-07!107;UBERON:0001155!1.96e-07!9;UBERON:0000062!8.96e-07!511 | |||
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|short_description=p7@SH3BGRL2 | |||
}} |
Revision as of 21:56, 13 September 2013
Short description: | p7@SH3BGRL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SH3BGRL2_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | -174bp_to_ENST00000369838, NM_031469, uc003piz.1_5end |
EntrezGene: | SH3BGRL2 |
HGNC: | 15567 |
UniProt: | Q9UJC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 7.50e-10 | 12 |
intestinal epithelial cell | 1.78e-08 | 4 |
endodermal cell | 4.73e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 1.58e-08 | 14 |
adenocarcinoma | 3.24e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.