FFCP PHASE1:Mm9::chr16:55949309..55949338,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=33|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr16:55949309..55949338,+|id=chr16:55949309..55949338,+|ontology_enrichment_celltype=CL:0000838!6.49e-17!12;CL:0000542!2.15e-15!13;CL:0000051!2.15e-15!13;CL:0000084!2.25e-15!11;CL:0000827!2.25e-15!11;CL:0000791!2.57e-12!9;CL:0000789!2.57e-12!9;CL:0002420!2.57e-12!9;CL:0002419!2.57e-12!9;CL:0000790!2.57e-12!9;CL:0000988!5.45e-12!32;CL:0002032!5.45e-12!32;CL:0000037!5.45e-12!32;CL:0000566!5.45e-12!32;CL:0000837!5.45e-12!32;CL:0000738!4.09e-11!17;CL:0002087!4.09e-11!17;CL:0002031!5.27e-11!25;CL:0000624!1.07e-10!8;CL:0002320!4.87e-09!46;CL:0000134!4.87e-09!46;CL:0000893!1.83e-07!6;CL:0002489!1.83e-07!6;CL:0000898!1.83e-07!6;CL:0000809!1.83e-07!6;CL:0000810!1.83e-07!6;CL:0000895!1.83e-07!6;CL:0000808!1.83e-07!6;CL:0000894!1.83e-07!6;CL:0000806!1.83e-07!6;CL:0000807!1.83e-07!6;CL:0000805!1.83e-07!6;CL:0002425!1.83e-07!6;CL:0002436!1.83e-07!6;CL:0002427!1.83e-07!6;CL:0002428!1.83e-07!6;CL:0002429!1.83e-07!6;CL:0002433!1.83e-07!6;CL:0002431!1.83e-07!6;CL:0002432!1.83e-07!6;CL:0000219!5.24e-07!54|ontology_enrichment_celltype_v019_2=CL:0000838,1.41e-25,12;CL:0000542,1.63e-23,13;CL:0000051,1.63e-23,13;CL:0000084,2.73e-22,11;CL:0000827,2.73e-22,11;CL:0000738,1.10e-17,17;CL:0002087,1.10e-17,17;CL:0000791,6.69e-16,9;CL:0000789,6.69e-16,9;CL:0002420,6.69e-16,9;CL:0002419,6.69e-16,9;CL:0000790,6.69e-16,9;CL:0000624,1.17e-12,8;CL:0002031,1.30e-11,25;CL:0000988,8.75e-09,32;CL:0002032,8.75e-09,32;CL:0000037,8.75e-09,32;CL:0000837,8.75e-09,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!1.76e-23!29;UBERON:0002370!3.35e-23!23;UBERON:0000974!3.35e-23!23;UBERON:0004807!3.35e-23!23;UBERON:0005058!3.35e-23!23;UBERON:0003351!3.35e-23!23;UBERON:0009113!3.35e-23!23;UBERON:0003295!3.35e-23!23;UBERON:0009722!3.35e-23!23;UBERON:0005562!3.35e-23!23;UBERON:0007690!3.35e-23!23;UBERON:0006562!5.19e-22!24;UBERON:0003408!5.19e-22!24;UBERON:0001557!5.19e-22!24;UBERON:0001042!5.19e-22!24;UBERON:0008814!5.19e-22!24;UBERON:0009145!5.19e-22!24;UBERON:0002193!8.93e-21!48;UBERON:0002390!3.81e-19!45;UBERON:0003061!3.81e-19!45;UBERON:0000072!5.66e-19!27;UBERON:0002405!4.14e-14!70;UBERON:0000063!1.90e-13!35;UBERON:0000065!2.01e-13!41;UBERON:0005057!3.56e-13!51;UBERON:0001004!5.70e-13!42;UBERON:0002384!4.87e-09!46;UBERON:0003081!7.18e-09!88;UBERON:0003929!1.36e-08!55;UBERON:0002368!1.90e-07!60;UBERON:0005911!2.41e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.68e-33,23;UBERON:0000974,2.68e-33,23;UBERON:0004807,2.68e-33,23;UBERON:0005058,2.68e-33,23;UBERON:0003351,2.68e-33,23;UBERON:0009113,2.68e-33,23;UBERON:0003295,2.68e-33,23;UBERON:0009722,2.68e-33,23;UBERON:0005562,2.68e-33,23;UBERON:0007690,2.68e-33,23;UBERON:0006562,8.21e-32,24;UBERON:0003408,8.21e-32,24;UBERON:0001557,8.21e-32,24;UBERON:0001042,8.21e-32,24;UBERON:0008814,8.21e-32,24;UBERON:0009145,8.21e-32,24;UBERON:0000072,5.17e-28,27;UBERON:0004177,6.47e-26,29;UBERON:0005057,6.47e-26,29;UBERON:0000077,4.66e-21,35;UBERON:0007811,2.09e-20,36;UBERON:0000065,1.28e-17,41;UBERON:0001004,3.86e-17,42;UBERON:0000153,1.10e-16,43;UBERON:0002390,7.82e-16,45;UBERON:0003061,7.82e-16,45;UBERON:0002193,1.09e-14,48;UBERON:0002405,1.09e-14,48;UBERON:0003929,1.67e-12,55;UBERON:0002368,2.98e-11,60;UBERON:0002530,3.41e-10,65;UBERON:0000490,5.31e-10,66;UBERON:0005911,1.86e-09,69;UBERON:0000949,5.86e-09,72;UBERON:0001041,8.23e-08,80;UBERON:0003081,5.58e-07,87|phase1_expression=0,0,0,0,0,0,0,5.29405626110463,1.267098499365,0.70219357896598,0,0.239316476986009,6.50562773738582,4.89554253546385,0,0,0,0.157731082679119,0.685572168028694,0.84877930359606,0.255129870453209,1.68794617041505,1.30599894569468,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51004345451963,3.62681071005672,3.6970317905671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718890747035522,0,0.635351135365324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0.350296027101508,0,0,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318909537314974,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185194527369712,0.188368457004691,0,0.228778173206523,0.849892149969277,1.6794174278839,1.38199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.58426689507628,0,0.308132871494482,0.909445760844565,1.9692936523423,3.57626438606277,3.846254384639,2.36303243479324,7.26958439626663,5.41068327250499,6.65452821903147,3.8983152295901,7.69694733122636,11.4539364137938,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0.755393897389701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0,0,0,0|short_description=p@chr16:55949309..55949338,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=33 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr16:55949309..55949338,+ | |||
|id=chr16:55949309..55949338,+ | |||
|ontology_enrichment_celltype=CL:0000838!6.49e-17!12;CL:0000542!2.15e-15!13;CL:0000051!2.15e-15!13;CL:0000084!2.25e-15!11;CL:0000827!2.25e-15!11;CL:0000791!2.57e-12!9;CL:0000789!2.57e-12!9;CL:0002420!2.57e-12!9;CL:0002419!2.57e-12!9;CL:0000790!2.57e-12!9;CL:0000988!5.45e-12!32;CL:0002032!5.45e-12!32;CL:0000037!5.45e-12!32;CL:0000566!5.45e-12!32;CL:0000837!5.45e-12!32;CL:0000738!4.09e-11!17;CL:0002087!4.09e-11!17;CL:0002031!5.27e-11!25;CL:0000624!1.07e-10!8;CL:0002320!4.87e-09!46;CL:0000134!4.87e-09!46;CL:0000893!1.83e-07!6;CL:0002489!1.83e-07!6;CL:0000898!1.83e-07!6;CL:0000809!1.83e-07!6;CL:0000810!1.83e-07!6;CL:0000895!1.83e-07!6;CL:0000808!1.83e-07!6;CL:0000894!1.83e-07!6;CL:0000806!1.83e-07!6;CL:0000807!1.83e-07!6;CL:0000805!1.83e-07!6;CL:0002425!1.83e-07!6;CL:0002436!1.83e-07!6;CL:0002427!1.83e-07!6;CL:0002428!1.83e-07!6;CL:0002429!1.83e-07!6;CL:0002433!1.83e-07!6;CL:0002431!1.83e-07!6;CL:0002432!1.83e-07!6;CL:0000219!5.24e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.41e-25,12;CL:0000542,1.63e-23,13;CL:0000051,1.63e-23,13;CL:0000084,2.73e-22,11;CL:0000827,2.73e-22,11;CL:0000738,1.10e-17,17;CL:0002087,1.10e-17,17;CL:0000791,6.69e-16,9;CL:0000789,6.69e-16,9;CL:0002420,6.69e-16,9;CL:0002419,6.69e-16,9;CL:0000790,6.69e-16,9;CL:0000624,1.17e-12,8;CL:0002031,1.30e-11,25;CL:0000988,8.75e-09,32;CL:0002032,8.75e-09,32;CL:0000037,8.75e-09,32;CL:0000837,8.75e-09,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.76e-23!29;UBERON:0002370!3.35e-23!23;UBERON:0000974!3.35e-23!23;UBERON:0004807!3.35e-23!23;UBERON:0005058!3.35e-23!23;UBERON:0003351!3.35e-23!23;UBERON:0009113!3.35e-23!23;UBERON:0003295!3.35e-23!23;UBERON:0009722!3.35e-23!23;UBERON:0005562!3.35e-23!23;UBERON:0007690!3.35e-23!23;UBERON:0006562!5.19e-22!24;UBERON:0003408!5.19e-22!24;UBERON:0001557!5.19e-22!24;UBERON:0001042!5.19e-22!24;UBERON:0008814!5.19e-22!24;UBERON:0009145!5.19e-22!24;UBERON:0002193!8.93e-21!48;UBERON:0002390!3.81e-19!45;UBERON:0003061!3.81e-19!45;UBERON:0000072!5.66e-19!27;UBERON:0002405!4.14e-14!70;UBERON:0000063!1.90e-13!35;UBERON:0000065!2.01e-13!41;UBERON:0005057!3.56e-13!51;UBERON:0001004!5.70e-13!42;UBERON:0002384!4.87e-09!46;UBERON:0003081!7.18e-09!88;UBERON:0003929!1.36e-08!55;UBERON:0002368!1.90e-07!60;UBERON:0005911!2.41e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.68e-33,23;UBERON:0000974,2.68e-33,23;UBERON:0004807,2.68e-33,23;UBERON:0005058,2.68e-33,23;UBERON:0003351,2.68e-33,23;UBERON:0009113,2.68e-33,23;UBERON:0003295,2.68e-33,23;UBERON:0009722,2.68e-33,23;UBERON:0005562,2.68e-33,23;UBERON:0007690,2.68e-33,23;UBERON:0006562,8.21e-32,24;UBERON:0003408,8.21e-32,24;UBERON:0001557,8.21e-32,24;UBERON:0001042,8.21e-32,24;UBERON:0008814,8.21e-32,24;UBERON:0009145,8.21e-32,24;UBERON:0000072,5.17e-28,27;UBERON:0004177,6.47e-26,29;UBERON:0005057,6.47e-26,29;UBERON:0000077,4.66e-21,35;UBERON:0007811,2.09e-20,36;UBERON:0000065,1.28e-17,41;UBERON:0001004,3.86e-17,42;UBERON:0000153,1.10e-16,43;UBERON:0002390,7.82e-16,45;UBERON:0003061,7.82e-16,45;UBERON:0002193,1.09e-14,48;UBERON:0002405,1.09e-14,48;UBERON:0003929,1.67e-12,55;UBERON:0002368,2.98e-11,60;UBERON:0002530,3.41e-10,65;UBERON:0000490,5.31e-10,66;UBERON:0005911,1.86e-09,69;UBERON:0000949,5.86e-09,72;UBERON:0001041,8.23e-08,80;UBERON:0003081,5.58e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,5.29405626110463,1.267098499365,0.70219357896598,0,0.239316476986009,6.50562773738582,4.89554253546385,0,0,0,0.157731082679119,0.685572168028694,0.84877930359606,0.255129870453209,1.68794617041505,1.30599894569468,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51004345451963,3.62681071005672,3.6970317905671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170430322578058,0.259786004602869,0,0,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.718890747035522,0,0.635351135365324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0.350296027101508,0,0,0,0.146199987425332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318909537314974,0.163863314715738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185194527369712,0.188368457004691,0,0.228778173206523,0.849892149969277,1.6794174278839,1.38199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.58426689507628,0,0.308132871494482,0.909445760844565,1.9692936523423,3.57626438606277,3.846254384639,2.36303243479324,7.26958439626663,5.41068327250499,6.65452821903147,3.8983152295901,7.69694733122636,11.4539364137938,0,0,0,0,0,0,0,0,0,0,0,0,0.171853182343688,0,0.755393897389701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0,0,0,0,0,0,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p@chr16:55949309..55949338,+ | |||
}} |
Revision as of 12:55, 13 September 2013
Short description: | p@chr16:55949309..55949338, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:55949309..55949338, + |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.41e-25 | 12 |
lymphocyte | 1.63e-23 | 13 |
common lymphoid progenitor | 1.63e-23 | 13 |
T cell | 2.73e-22 | 11 |
pro-T cell | 2.73e-22 | 11 |
leukocyte | 1.10e-17 | 17 |
nongranular leukocyte | 1.10e-17 | 17 |
mature alpha-beta T cell | 6.69e-16 | 9 |
alpha-beta T cell | 6.69e-16 | 9 |
immature T cell | 6.69e-16 | 9 |
mature T cell | 6.69e-16 | 9 |
immature alpha-beta T cell | 6.69e-16 | 9 |
CD4-positive, alpha-beta T cell | 1.17e-12 | 8 |
hematopoietic lineage restricted progenitor cell | 1.30e-11 | 25 |
hematopoietic cell | 8.75e-09 | 32 |
hematopoietic oligopotent progenitor cell | 8.75e-09 | 32 |
hematopoietic stem cell | 8.75e-09 | 32 |
hematopoietic multipotent progenitor cell | 8.75e-09 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.