FFCP PHASE1:Hg19::chr22:21355865..21355886,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80764|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23190|TSSclassifier=S|UniProt=|association_with_transcript=-58bp_to_ENST00000488975_5end|description=CAGE_peak_5_at_THAP7_5end|id=chr22:21355865..21355886,-|ontology_enrichment_celltype=CL:0000066!4.15e-09!254;CL:1000449!2.93e-07!16;CL:1000507!8.76e-07!12;CL:1000494!8.76e-07!12|ontology_enrichment_celltype_v019=CL:1000507;3.40e-21;10!CL:1000494;3.40e-21;10!CL:1000449;2.15e-20;15!CL:1000497;1.09e-17;17!CL:0002518;1.09e-17;17!CL:0002681;4.00e-17;12!CL:0002584;4.00e-17;12!CL:0002202;6.62e-11;9!CL:0002632;6.62e-11;9!CL:0002328;1.85e-09;3!CL:0000239;5.32e-09;3!CL:1000615;5.32e-09;3!CL:0002306;5.32e-09;3!CL:0000123;2.59e-07;2!CL:0000242;2.59e-07;2!CL:0002368;2.63e-07;13!CL:0000244;8.27e-07;4!CL:0000731;8.27e-07;4|ontology_enrichment_celltype_v019_2=CL:1000507,5.00e-21,10;CL:1000494,5.00e-21,10;CL:1000449,2.25e-20,15;CL:1000497,1.13e-17,17;CL:0002518,1.13e-17,17;CL:0002681,4.32e-17,12;CL:0002584,4.32e-17,12;CL:0002202,3.50e-11,9;CL:0002632,3.50e-11,9;CL:0002328,1.29e-09,3;CL:0000239,4.29e-09,3;CL:1000615,4.29e-09,3;CL:0002306,4.29e-09,3;CL:0000066,2.10e-08,253;CL:0002368,1.73e-07,13;CL:0000242,2.47e-07,2;CL:0000244,7.97e-07,4;CL:0000731,7.97e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006554!5.15e-10!44;UBERON:0001008!1.99e-09!45;UBERON:0002113!3.75e-08!27;UBERON:0003918!3.75e-08!27;UBERON:0005095!3.75e-08!27;UBERON:0007687!3.75e-08!27;UBERON:0000080!1.79e-07!18;UBERON:0002120!1.79e-07!18;UBERON:0004875!1.79e-07!18;UBERON:0005721!1.79e-07!18;UBERON:0005754!1.79e-07!18;UBERON:0007297!1.79e-07!18;UBERON:0004211!2.93e-07!16;UBERON:0001285!2.93e-07!16;UBERON:0007684!2.93e-07!16;UBERON:0003220!2.93e-07!16;UBERON:0004208!2.93e-07!16;UBERON:0006555!5.22e-07!17;UBERON:0005103!5.22e-07!17;UBERON:0000083!5.22e-07!17;UBERON:0009201!5.22e-07!17;UBERON:0004819!5.22e-07!17;UBERON:0006553!5.22e-07!17;UBERON:0003074!5.22e-07!17;UBERON:0003060!5.22e-07!17;UBERON:0003064!5.51e-07!37;UBERON:0004876!6.51e-07!20;UBERON:0009773!8.76e-07!12;UBERON:0001231!8.76e-07!12;UBERON:0004810!8.76e-07!12|ontology_enrichment_uberon_v019=UBERON:0004211;3.40e-21;10!UBERON:0009773;3.40e-21;10!UBERON:0001231;3.40e-21;10!UBERON:0004810;3.40e-21;10!UBERON:0006555;2.15e-20;15!UBERON:0004819;2.15e-20;15!UBERON:0001285;2.15e-20;15!UBERON:0007684;2.15e-20;15!UBERON:0006554;1.15e-19;30!UBERON:0001008;1.15e-19;30!UBERON:0001225;4.00e-17;12!UBERON:0008987;4.00e-17;12!UBERON:0002113;1.52e-16;24!UBERON:0011143;1.52e-16;24!UBERON:0000353;2.06e-16;15!UBERON:0001851;2.49e-13;15!UBERON:0000489;3.83e-13;29!UBERON:0004815;1.85e-09;3!UBERON:0002031;1.85e-09;3!UBERON:0006853;5.32e-09;3!UBERON:0007685;5.32e-09;3!UBERON:0004134;5.32e-09;3!UBERON:0001737;4.19e-07;9!UBERON:0001557;4.19e-07;9!UBERON:0000072;5.63e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.00e-21,10;UBERON:0004211,2.25e-20,15;UBERON:0009773,2.25e-20,15;UBERON:0001231,2.25e-20,15;UBERON:0001285,2.25e-20,15;UBERON:0007684,2.25e-20,15;UBERON:0004208,2.25e-20,15;UBERON:0006555,6.14e-19,16;UBERON:0004819,6.14e-19,16;UBERON:0001225,4.32e-17,12;UBERON:0008987,4.32e-17,12;UBERON:0000353,2.01e-16,15;UBERON:0002113,6.04e-15,26;UBERON:0003918,6.04e-15,26;UBERON:0011143,6.04e-15,26;UBERON:0005095,6.04e-15,26;UBERON:0007687,6.04e-15,26;UBERON:0001851,2.64e-13,15;UBERON:0000489,4.97e-12,31;UBERON:0006554,4.97e-11,47;UBERON:0001008,1.02e-10,48;UBERON:0005177,1.69e-10,101;UBERON:0004815,1.29e-09,3;UBERON:0002031,1.29e-09,3;UBERON:0006853,4.29e-09,3;UBERON:0007685,4.29e-09,3;UBERON:0004134,4.29e-09,3;UBERON:0009569,5.99e-09,112;UBERON:0008947,8.74e-08,38;UBERON:0003258,8.74e-08,38;UBERON:0005172,9.15e-08,54;UBERON:0005173,9.15e-08,54;UBERON:0001737,5.54e-07,9;UBERON:0000072,7.26e-07,47|phase1_expression=0.363356758541113,0.428201047781966,0.281908808191942,0,0,0,0,0,0,1.22866968250754,3.48900583986214,0,0.263766978228454,0,0,0,0,0,0,0.492484232307152,1.02000345622126,0.313454721478088,0,0.547497700291537,0.502170558379211,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0.309632246632152,7.35536979583142,2.71085326900425,1.47901604066715,0.154934401160603,0.142169232487422,0,0.553995408531877,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0.236482229888585,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0.398927315243264,0,0,0,0.622822248995575,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0,0.300353785683013,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0.393419540227666,0.786021525498329,1.43921049299656,0,0.32592226663359,0,0,0,0,0.443067789167242,0.270803863765016,0.25618263945135,0.260118695119756,0,0,0,0.14828656316206,0.267540828089713,1.04535523804977,0,1.14966148080576,0.68725489096526,0.506039384039006,0,0,0,0,0,0,0.473554504088034,0,1.41124720257313,2.94184215361858,0.4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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80764 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23190 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-58bp_to_ENST00000488975_5end | |||
|description=CAGE_peak_5_at_THAP7_5end | |||
|id=chr22:21355865..21355886,- | |||
|ontology_enrichment_celltype=CL:0000066!4.15e-09!254;CL:1000449!2.93e-07!16;CL:1000507!8.76e-07!12;CL:1000494!8.76e-07!12 | |||
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|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| |||
|short_description=p5@THAP7 | |||
}} |
Revision as of 11:04, 12 September 2013
Short description: | p5@THAP7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_THAP7_5end |
Coexpression cluster: | NA |
Association with transcript: | -58bp_to_ENST00000488975_5end |
EntrezGene: | THAP7 |
HGNC: | 23190 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 5.00e-21 | 10 |
nephron tubule epithelial cell | 5.00e-21 | 10 |
epithelial cell of nephron | 2.25e-20 | 15 |
kidney cell | 1.13e-17 | 17 |
kidney epithelial cell | 1.13e-17 | 17 |
kidney cortical cell | 4.32e-17 | 12 |
renal cortical epithelial cell | 4.32e-17 | 12 |
epithelial cell of tracheobronchial tree | 3.50e-11 | 9 |
epithelial cell of lower respiratory tract | 3.50e-11 | 9 |
bronchial epithelial cell | 1.29e-09 | 3 |
brush border epithelial cell | 4.29e-09 | 3 |
kidney cortex tubule cell | 4.29e-09 | 3 |
epithelial cell of proximal tubule | 4.29e-09 | 3 |
epithelial cell | 2.10e-08 | 253 |
respiratory epithelial cell | 1.73e-07 | 13 |
Merkel cell | 2.47e-07 | 2 |
transitional epithelial cell | 7.97e-07 | 4 |
urothelial cell | 7.97e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 5.00e-21 | 10 |
nephron epithelium | 2.25e-20 | 15 |
renal tubule | 2.25e-20 | 15 |
nephron tubule | 2.25e-20 | 15 |
nephron | 2.25e-20 | 15 |
uriniferous tubule | 2.25e-20 | 15 |
nephrogenic mesenchyme | 2.25e-20 | 15 |
excretory tube | 6.14e-19 | 16 |
kidney epithelium | 6.14e-19 | 16 |
cortex of kidney | 4.32e-17 | 12 |
renal parenchyma | 4.32e-17 | 12 |
parenchyma | 2.01e-16 | 15 |
kidney | 6.04e-15 | 26 |
kidney mesenchyme | 6.04e-15 | 26 |
upper urinary tract | 6.04e-15 | 26 |
kidney rudiment | 6.04e-15 | 26 |
kidney field | 6.04e-15 | 26 |
cortex | 2.64e-13 | 15 |
cavitated compound organ | 4.97e-12 | 31 |
urinary system structure | 4.97e-11 | 47 |
renal system | 1.02e-10 | 48 |
trunk region element | 1.69e-10 | 101 |
lower respiratory tract epithelium | 1.29e-09 | 3 |
epithelium of bronchus | 1.29e-09 | 3 |
renal cortex tubule | 4.29e-09 | 3 |
region of nephron tubule | 4.29e-09 | 3 |
proximal tubule | 4.29e-09 | 3 |
subdivision of trunk | 5.99e-09 | 112 |
respiratory primordium | 8.74e-08 | 38 |
endoderm of foregut | 8.74e-08 | 38 |
abdomen element | 9.15e-08 | 54 |
abdominal segment element | 9.15e-08 | 54 |
larynx | 5.54e-07 | 9 |
segment of respiratory tract | 7.26e-07 | 47 |
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