FFCP PHASE1:Hg19::chr17:46622205..46622218,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3212|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=5113|TSSclassifier=S|UniProt=|association_with_transcript=-189bp_to_ENST00000326226_5end|coexpression_cluster_id=C249|description=CAGE_peak_3_at_HOXB2_5end|id=chr17:46622205..46622218,-|ontology_enrichment_celltype=CL:0000222!1.18e-10!119;CL:1000497!1.97e-09!18;CL:0002518!1.97e-09!18;CL:1000449!7.32e-09!16;CL:0000055!8.08e-09!180;CL:0000183!6.59e-08!59;CL:1000507!2.25e-07!12;CL:1000494!2.25e-07!12;CL:0000680!2.28e-07!57;CL:0000056!2.28e-07!57;CL:0000355!2.28e-07!57;CL:0002681!7.43e-07!13;CL:0002584!7.43e-07!13|ontology_enrichment_celltype_v019=CL:1000497;3.39e-14;17!CL:0002518;3.39e-14;17!CL:1000449;1.56e-13;15!CL:1000507;3.41e-11;10!CL:1000494;3.41e-11;10!CL:0002681;1.34e-10;12!CL:0002584;1.34e-10;12|ontology_enrichment_celltype_v019_2=CL:1000497,2.78e-14,17;CL:0002518,2.78e-14,17;CL:1000449,1.55e-13,15;CL:1000507,3.47e-11,10;CL:1000494,3.47e-11,10;CL:0000222,1.01e-10,121;CL:0002681,1.31e-10,12;CL:0002584,1.31e-10,12;CL:0002321,7.60e-08,250;CL:0000680,9.48e-08,58;CL:0000056,9.48e-08,58;CL:0000355,9.48e-08,58;CL:0000187,8.96e-07,55|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:14566,5.04e-07,239;DOID:162,7.44e-07,235|ontology_enrichment_uberon=UBERON:0002113!1.37e-11!27;UBERON:0003918!1.37e-11!27;UBERON:0005095!1.37e-11!27;UBERON:0007687!1.37e-11!27;UBERON:0000489!4.09e-11!32;UBERON:0003914!2.03e-10!118;UBERON:0000080!2.29e-09!18;UBERON:0002120!2.29e-09!18;UBERON:0004875!2.29e-09!18;UBERON:0005721!2.29e-09!18;UBERON:0005754!2.29e-09!18;UBERON:0007297!2.29e-09!18;UBERON:0006555!3.14e-09!17;UBERON:0005103!3.14e-09!17;UBERON:0000083!3.14e-09!17;UBERON:0009201!3.14e-09!17;UBERON:0004819!3.14e-09!17;UBERON:0006553!3.14e-09!17;UBERON:0003074!3.14e-09!17;UBERON:0003060!3.14e-09!17;UBERON:0004211!7.32e-09!16;UBERON:0001285!7.32e-09!16;UBERON:0007684!7.32e-09!16;UBERON:0003220!7.32e-09!16;UBERON:0004208!7.32e-09!16;UBERON:0000058!1.92e-08!26;UBERON:0005256!2.17e-08!143;UBERON:0000353!3.24e-08!17;UBERON:0004290!3.52e-08!70;UBERON:0003887!3.96e-08!21;UBERON:0004876!1.45e-07!20;UBERON:0005172!1.76e-07!55;UBERON:0005173!1.76e-07!55;UBERON:0009773!2.25e-07!12;UBERON:0001231!2.25e-07!12;UBERON:0004810!2.25e-07!12;UBERON:0001225!7.43e-07!13;UBERON:0008987!7.43e-07!13;UBERON:0001637!9.69e-07!42;UBERON:0003509!9.69e-07!42;UBERON:0004572!9.69e-07!42|ontology_enrichment_uberon_v019=UBERON:0002113;1.48e-15;24!UBERON:0011143;1.48e-15;24!UBERON:0006555;1.56e-13;15!UBERON:0004819;1.56e-13;15!UBERON:0001285;1.56e-13;15!UBERON:0007684;1.56e-13;15!UBERON:0000489;1.75e-12;29!UBERON:0000353;1.81e-12;15!UBERON:0004211;3.41e-11;10!UBERON:0009773;3.41e-11;10!UBERON:0001231;3.41e-11;10!UBERON:0004810;3.41e-11;10!UBERON:0006554;7.70e-11;30!UBERON:0001008;7.70e-11;30!UBERON:0001225;1.34e-10;12!UBERON:0008987;1.34e-10;12!UBERON:0001851;3.27e-10;15!UBERON:0005172;2.34e-07;52!UBERON:0005173;2.34e-07;52|ontology_enrichment_uberon_v019_2=UBERON:0002113,2.10e-16,26;UBERON:0003918,2.10e-16,26;UBERON:0011143,2.10e-16,26;UBERON:0005095,2.10e-16,26;UBERON:0007687,2.10e-16,26;UBERON:0006555,4.90e-14,16;UBERON:0004819,4.90e-14,16;UBERON:0003104,1.09e-13,160;UBERON:0009142,1.09e-13,160;UBERON:0004211,1.55e-13,15;UBERON:0009773,1.55e-13,15;UBERON:0001231,1.55e-13,15;UBERON:0001285,1.55e-13,15;UBERON:0007684,1.55e-13,15;UBERON:0004208,1.55e-13,15;UBERON:0000489,2.11e-13,31;UBERON:0000353,1.68e-12,15;UBERON:0007503,5.25e-12,78;UBERON:0004810,3.47e-11,10;UBERON:0001225,1.31e-10,12;UBERON:0008987,1.31e-10,12;UBERON:0005172,1.42e-10,54;UBERON:0005173,1.42e-10,54;UBERON:0001851,4.61e-10,15;UBERON:0002100,2.23e-09,199;UBERON:0003914,2.44e-09,117;UBERON:0005256,3.21e-09,122;UBERON:0002329,5.98e-09,71;UBERON:0003059,5.98e-09,71;UBERON:0007282,5.98e-09,71;UBERON:0004290,5.98e-09,71;UBERON:0009618,5.98e-09,71;UBERON:0003077,1.14e-08,72;UBERON:0007285,1.14e-08,72;UBERON:0002417,1.75e-08,60;UBERON:0000916,1.75e-08,60;UBERON:0007524,2.14e-08,73;UBERON:0000058,2.11e-07,19;UBERON:0000486,3.34e-07,83;UBERON:0006554,3.39e-07,47;UBERON:0001008,6.90e-07,48|phase1_expression=0.363356758541113,0,0.281908808191942,0,0,1.74467704820074,2.53299878168311,0,0.261185628199839,15.2355040630935,6.28021051175185,0.436882744260345,1.31883489114227,0.618831764800233,0.662794751455832,10.0848771967766,10.8485015044316,9.49403117503585,13.1741855673437,12.3121058076788,18.1560615207385,7.20945859399602,2.57612388417951,8.34933992944594,4.2684497462233,0.305653622991805,0.0821005894499457,0.0787107813136792,0.393364276848904,0,0,0,0,0,0,0,0.293600439334847,0,0,0.651032612147555,0,0,0.515151135268373,0.145398238779565,0,0,0.464858073811369,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.398927315243264,0,0,0,0,0,0,0.217188844705117,0,0,0,0.422510572623884,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0.526768169550154,1.37696839079683,0.786021525498329,0.616804496998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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3212 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5113 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-189bp_to_ENST00000326226_5end | |||
|coexpression_cluster_id=C249 | |||
|description=CAGE_peak_3_at_HOXB2_5end | |||
|id=chr17:46622205..46622218,- | |||
|ontology_enrichment_celltype=CL:0000222!1.18e-10!119;CL:1000497!1.97e-09!18;CL:0002518!1.97e-09!18;CL:1000449!7.32e-09!16;CL:0000055!8.08e-09!180;CL:0000183!6.59e-08!59;CL:1000507!2.25e-07!12;CL:1000494!2.25e-07!12;CL:0000680!2.28e-07!57;CL:0000056!2.28e-07!57;CL:0000355!2.28e-07!57;CL:0002681!7.43e-07!13;CL:0002584!7.43e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.39e-14;17!CL:0002518;3.39e-14;17!CL:1000449;1.56e-13;15!CL:1000507;3.41e-11;10!CL:1000494;3.41e-11;10!CL:0002681;1.34e-10;12!CL:0002584;1.34e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.78e-14,17;CL:0002518,2.78e-14,17;CL:1000449,1.55e-13,15;CL:1000507,3.47e-11,10;CL:1000494,3.47e-11,10;CL:0000222,1.01e-10,121;CL:0002681,1.31e-10,12;CL:0002584,1.31e-10,12;CL:0002321,7.60e-08,250;CL:0000680,9.48e-08,58;CL:0000056,9.48e-08,58;CL:0000355,9.48e-08,58;CL:0000187,8.96e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,5.04e-07,239;DOID:162,7.44e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0002113!1.37e-11!27;UBERON:0003918!1.37e-11!27;UBERON:0005095!1.37e-11!27;UBERON:0007687!1.37e-11!27;UBERON:0000489!4.09e-11!32;UBERON:0003914!2.03e-10!118;UBERON:0000080!2.29e-09!18;UBERON:0002120!2.29e-09!18;UBERON:0004875!2.29e-09!18;UBERON:0005721!2.29e-09!18;UBERON:0005754!2.29e-09!18;UBERON:0007297!2.29e-09!18;UBERON:0006555!3.14e-09!17;UBERON:0005103!3.14e-09!17;UBERON:0000083!3.14e-09!17;UBERON:0009201!3.14e-09!17;UBERON:0004819!3.14e-09!17;UBERON:0006553!3.14e-09!17;UBERON:0003074!3.14e-09!17;UBERON:0003060!3.14e-09!17;UBERON:0004211!7.32e-09!16;UBERON:0001285!7.32e-09!16;UBERON:0007684!7.32e-09!16;UBERON:0003220!7.32e-09!16;UBERON:0004208!7.32e-09!16;UBERON:0000058!1.92e-08!26;UBERON:0005256!2.17e-08!143;UBERON:0000353!3.24e-08!17;UBERON:0004290!3.52e-08!70;UBERON:0003887!3.96e-08!21;UBERON:0004876!1.45e-07!20;UBERON:0005172!1.76e-07!55;UBERON:0005173!1.76e-07!55;UBERON:0009773!2.25e-07!12;UBERON:0001231!2.25e-07!12;UBERON:0004810!2.25e-07!12;UBERON:0001225!7.43e-07!13;UBERON:0008987!7.43e-07!13;UBERON:0001637!9.69e-07!42;UBERON:0003509!9.69e-07!42;UBERON:0004572!9.69e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;1.48e-15;24!UBERON:0011143;1.48e-15;24!UBERON:0006555;1.56e-13;15!UBERON:0004819;1.56e-13;15!UBERON:0001285;1.56e-13;15!UBERON:0007684;1.56e-13;15!UBERON:0000489;1.75e-12;29!UBERON:0000353;1.81e-12;15!UBERON:0004211;3.41e-11;10!UBERON:0009773;3.41e-11;10!UBERON:0001231;3.41e-11;10!UBERON:0004810;3.41e-11;10!UBERON:0006554;7.70e-11;30!UBERON:0001008;7.70e-11;30!UBERON:0001225;1.34e-10;12!UBERON:0008987;1.34e-10;12!UBERON:0001851;3.27e-10;15!UBERON:0005172;2.34e-07;52!UBERON:0005173;2.34e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,2.10e-16,26;UBERON:0003918,2.10e-16,26;UBERON:0011143,2.10e-16,26;UBERON:0005095,2.10e-16,26;UBERON:0007687,2.10e-16,26;UBERON:0006555,4.90e-14,16;UBERON:0004819,4.90e-14,16;UBERON:0003104,1.09e-13,160;UBERON:0009142,1.09e-13,160;UBERON:0004211,1.55e-13,15;UBERON:0009773,1.55e-13,15;UBERON:0001231,1.55e-13,15;UBERON:0001285,1.55e-13,15;UBERON:0007684,1.55e-13,15;UBERON:0004208,1.55e-13,15;UBERON:0000489,2.11e-13,31;UBERON:0000353,1.68e-12,15;UBERON:0007503,5.25e-12,78;UBERON:0004810,3.47e-11,10;UBERON:0001225,1.31e-10,12;UBERON:0008987,1.31e-10,12;UBERON:0005172,1.42e-10,54;UBERON:0005173,1.42e-10,54;UBERON:0001851,4.61e-10,15;UBERON:0002100,2.23e-09,199;UBERON:0003914,2.44e-09,117;UBERON:0005256,3.21e-09,122;UBERON:0002329,5.98e-09,71;UBERON:0003059,5.98e-09,71;UBERON:0007282,5.98e-09,71;UBERON:0004290,5.98e-09,71;UBERON:0009618,5.98e-09,71;UBERON:0003077,1.14e-08,72;UBERON:0007285,1.14e-08,72;UBERON:0002417,1.75e-08,60;UBERON:0000916,1.75e-08,60;UBERON:0007524,2.14e-08,73;UBERON:0000058,2.11e-07,19;UBERON:0000486,3.34e-07,83;UBERON:0006554,3.39e-07,47;UBERON:0001008,6.90e-07,48 | |||
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| |||
|short_description=p3@HOXB2 | |||
}} |
Revision as of 14:14, 11 September 2013
Short description: | p3@HOXB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXB2_5end |
Coexpression cluster: | C249_nonsmall_small_smallcell_occipital_somatostatinoma_maxillary_medial |
Association with transcript: | -189bp_to_ENST00000326226_5end |
EntrezGene: | HOXB2 |
HGNC: | 5113 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.78e-14 | 17 |
kidney epithelial cell | 2.78e-14 | 17 |
epithelial cell of nephron | 1.55e-13 | 15 |
kidney tubule cell | 3.47e-11 | 10 |
nephron tubule epithelial cell | 3.47e-11 | 10 |
mesodermal cell | 1.01e-10 | 121 |
kidney cortical cell | 1.31e-10 | 12 |
renal cortical epithelial cell | 1.31e-10 | 12 |
embryonic cell | 7.60e-08 | 250 |
muscle precursor cell | 9.48e-08 | 58 |
myoblast | 9.48e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.48e-08 | 58 |
muscle cell | 8.96e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 5.04e-07 | 239 |
cancer | 7.44e-07 | 235 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.