FFCP PHASE1:Hg19::chr15:27018175..27018241,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2562|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4083|TSSclassifier=S|UniProt=P28472,G3V373|association_with_transcript=0bp_to_ENST00000311550,ENST00000554556,NM_000814_5end|coexpression_cluster_id=C3|description=CAGE_peak_1_at_GABRB3_5end|id=chr15:27018175..27018241,-|ontology_enrichment_celltype=CL:0000047!4.23e-08!8;CL:0000133!8.65e-08!59;CL:0000147!2.23e-07!14;CL:0000325!5.59e-07!39|ontology_enrichment_celltype_v019=CL:0000540;7.54e-09;6!CL:0000404;7.54e-09;6!CL:0002322;3.28e-08;5!CL:0002319;5.19e-07;25|ontology_enrichment_celltype_v019_2=CL:0000047,2.58e-11,8;CL:0000540,7.24e-09,6;CL:0000031,7.24e-09,6;CL:0000404,7.24e-09,6;CL:0002322,3.19e-08,5;CL:0000133,7.71e-08,59;CL:0002319,4.93e-07,25|ontology_enrichment_development_v019=UBERON:0006601;8.09e-16;82!CL:0000031;7.54e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!1.29e-48!86;UBERON:0000073!2.23e-47!94;UBERON:0001016!2.23e-47!94;UBERON:0001017!3.48e-46!82;UBERON:0007023!1.03e-41!115;UBERON:0001049!1.70e-41!57;UBERON:0005068!1.70e-41!57;UBERON:0006241!1.70e-41!57;UBERON:0007135!1.70e-41!57;UBERON:0003075!9.27e-39!86;UBERON:0007284!9.27e-39!86;UBERON:0002346!9.38e-38!90;UBERON:0002780!5.33e-36!41;UBERON:0001890!5.33e-36!41;UBERON:0006240!5.33e-36!41;UBERON:0000955!1.41e-35!69;UBERON:0006238!1.41e-35!69;UBERON:0002616!3.37e-35!59;UBERON:0003080!1.06e-34!42;UBERON:0003056!2.50e-31!61;UBERON:0001893!3.18e-30!34;UBERON:0002020!4.25e-30!34;UBERON:0003528!4.25e-30!34;UBERON:0002791!2.91e-29!33;UBERON:0001869!4.37e-29!32;UBERON:0004121!2.21e-27!169;UBERON:0000924!3.20e-27!173;UBERON:0006601!3.20e-27!173;UBERON:0000153!1.23e-23!129;UBERON:0007811!1.23e-23!129;UBERON:0000033!6.49e-23!123;UBERON:0000956!6.97e-23!25;UBERON:0000203!6.97e-23!25;UBERON:0002619!3.36e-22!22;UBERON:0001950!1.99e-20!20;UBERON:0000475!5.78e-10!365;UBERON:0000064!7.50e-10!219;UBERON:0000025!2.25e-09!194;UBERON:0002420!4.18e-09!9;UBERON:0007245!4.18e-09!9;UBERON:0010009!4.18e-09!9;UBERON:0010011!4.18e-09!9;UBERON:0000454!4.18e-09!9;UBERON:0001871!1.16e-08!7;UBERON:0002308!1.30e-08!9;UBERON:0000125!1.30e-08!9;UBERON:0003076!3.33e-08!15;UBERON:0003057!3.33e-08!15;UBERON:0000922!6.87e-08!612;UBERON:0000481!1.99e-07!347;UBERON:0000062!2.32e-07!511;UBERON:0000468!2.75e-07!659;UBERON:0009663!3.33e-07!7;UBERON:0001894!4.05e-07!7;UBERON:0006222!4.05e-07!7;UBERON:0000200!6.11e-07!6;UBERON:0004111!8.32e-07!241;UBERON:0004732!8.46e-07!13|ontology_enrichment_uberon_v019=UBERON:0002780;2.86e-35;41!UBERON:0001890;2.86e-35;41!UBERON:0001869;6.14e-35;32!UBERON:0001893;1.47e-34;34!UBERON:0003528;1.61e-34;34!UBERON:0002020;1.61e-34;34!UBERON:0002791;1.78e-34;32!UBERON:0002619;2.12e-32;22!UBERON:0000073;1.38e-31;53!UBERON:0002616;1.38e-31;53!UBERON:0000956;9.04e-30;25!UBERON:0000203;9.04e-30;25!UBERON:0001950;9.43e-30;20!UBERON:0000955;1.64e-23;68!UBERON:0001017;5.47e-23;75!UBERON:0001016;6.99e-22;83!UBERON:0002420;8.07e-13;9!UBERON:0007245;8.07e-13;9!UBERON:0010009;8.07e-13;9!UBERON:0010011;8.07e-13;9!UBERON:0000454;8.07e-13;9!UBERON:0000125;4.27e-12;9!UBERON:0002308;4.27e-12;9!UBERON:0007023;2.50e-11;114!UBERON:0001871;8.19e-11;6!UBERON:0009663;5.42e-10;7!UBERON:0001894;7.54e-10;7!UBERON:0000200;1.35e-09;6!UBERON:0000922;2.00e-09;49!UBERON:0004732;1.21e-08;13!UBERON:0000349;1.51e-08;5!UBERON:0011216;2.27e-08;132!UBERON:0001872;2.34e-08;5!UBERON:0002021;3.35e-08;5!UBERON:0004733;7.82e-08;12!UBERON:0002028;7.82e-08;12!UBERON:0002298;1.30e-07;6!UBERON:0000369;3.24e-07;4!UBERON:0002435;3.24e-07;4!UBERON:0000204;3.24e-07;4!UBERON:0003296;7.88e-07;4!UBERON:0010133;7.88e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.26e-67,81;UBERON:0001016,1.77e-66,89;UBERON:0001049,1.45e-58,56;UBERON:0005068,1.45e-58,56;UBERON:0006241,1.45e-58,56;UBERON:0007135,1.45e-58,56;UBERON:0000073,2.95e-55,53;UBERON:0002616,2.95e-55,53;UBERON:0000955,4.36e-51,68;UBERON:0006238,4.36e-51,68;UBERON:0002780,2.27e-49,41;UBERON:0001890,2.27e-49,41;UBERON:0003080,2.27e-49,41;UBERON:0006240,2.27e-49,41;UBERON:0003075,6.55e-49,82;UBERON:0007284,6.55e-49,82;UBERON:0002346,1.11e-45,86;UBERON:0001893,9.57e-41,34;UBERON:0003528,1.45e-40,34;UBERON:0002020,1.45e-40,34;UBERON:0003056,2.21e-40,61;UBERON:0001869,5.15e-39,32;UBERON:0010371,1.14e-38,104;UBERON:0002791,2.27e-38,32;UBERON:0004121,1.20e-34,171;UBERON:0000924,1.20e-34,171;UBERON:0006601,1.20e-34,171;UBERON:0002619,2.22e-32,22;UBERON:0007023,5.77e-32,114;UBERON:0000956,8.55e-30,25;UBERON:0000203,8.55e-30,25;UBERON:0001950,1.00e-29,20;UBERON:0010314,1.91e-29,132;UBERON:0011216,4.88e-24,223;UBERON:0002420,8.25e-13,9;UBERON:0007245,8.25e-13,9;UBERON:0010009,8.25e-13,9;UBERON:0010011,8.25e-13,9;UBERON:0000454,8.25e-13,9;UBERON:0000025,3.68e-12,192;UBERON:0000125,4.46e-12,9;UBERON:0002308,4.46e-12,9;UBERON:0001871,8.32e-11,6;UBERON:0003076,1.07e-10,15;UBERON:0003057,1.07e-10,15;UBERON:0009663,5.54e-10,7;UBERON:0001894,7.40e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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2562 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4083 | |||
|TSSclassifier=S | |||
|UniProt=P28472,G3V373 | |||
|association_with_transcript=0bp_to_ENST00000311550,ENST00000554556,NM_000814_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_GABRB3_5end | |||
|id=chr15:27018175..27018241,- | |||
|ontology_enrichment_celltype=CL:0000047!4.23e-08!8;CL:0000133!8.65e-08!59;CL:0000147!2.23e-07!14;CL:0000325!5.59e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000540;7.54e-09;6!CL:0000404;7.54e-09;6!CL:0002322;3.28e-08;5!CL:0002319;5.19e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.58e-11,8;CL:0000540,7.24e-09,6;CL:0000031,7.24e-09,6;CL:0000404,7.24e-09,6;CL:0002322,3.19e-08,5;CL:0000133,7.71e-08,59;CL:0002319,4.93e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.09e-16;82!CL:0000031;7.54e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002780;2.86e-35;41!UBERON:0001890;2.86e-35;41!UBERON:0001869;6.14e-35;32!UBERON:0001893;1.47e-34;34!UBERON:0003528;1.61e-34;34!UBERON:0002020;1.61e-34;34!UBERON:0002791;1.78e-34;32!UBERON:0002619;2.12e-32;22!UBERON:0000073;1.38e-31;53!UBERON:0002616;1.38e-31;53!UBERON:0000956;9.04e-30;25!UBERON:0000203;9.04e-30;25!UBERON:0001950;9.43e-30;20!UBERON:0000955;1.64e-23;68!UBERON:0001017;5.47e-23;75!UBERON:0001016;6.99e-22;83!UBERON:0002420;8.07e-13;9!UBERON:0007245;8.07e-13;9!UBERON:0010009;8.07e-13;9!UBERON:0010011;8.07e-13;9!UBERON:0000454;8.07e-13;9!UBERON:0000125;4.27e-12;9!UBERON:0002308;4.27e-12;9!UBERON:0007023;2.50e-11;114!UBERON:0001871;8.19e-11;6!UBERON:0009663;5.42e-10;7!UBERON:0001894;7.54e-10;7!UBERON:0000200;1.35e-09;6!UBERON:0000922;2.00e-09;49!UBERON:0004732;1.21e-08;13!UBERON:0000349;1.51e-08;5!UBERON:0011216;2.27e-08;132!UBERON:0001872;2.34e-08;5!UBERON:0002021;3.35e-08;5!UBERON:0004733;7.82e-08;12!UBERON:0002028;7.82e-08;12!UBERON:0002298;1.30e-07;6!UBERON:0000369;3.24e-07;4!UBERON:0002435;3.24e-07;4!UBERON:0000204;3.24e-07;4!UBERON:0003296;7.88e-07;4!UBERON:0010133;7.88e-07;4 | |||
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|phase1_expression=2.90685406832891,0.214100523890983,1.26858963686374,1.0007329835313,0.446961094427288,1.74467704820074,0,0.631719873426831,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,1.71741592278634,0.684372125364421,0.125542639594803,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0,0,0,1.03988298880475,0.221729397462564,0.351339142772504,7.13835961462534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366403487860815,0,0,0,0,0.12663051166458,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,49.6432983947453,33.9276206903002,43.6889225189389,35.3484197602413,36.3342025260905,18.6138453128673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0.109750285408626,0,0,0,0,0,0,1.97081688457631,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0159663086747,5.72982638337417,1.17217447210047,0,0.102827492703324,0.901029173531752,1.14330573052231,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.142977993658148,0,0,0,0,0,2.1100756394171,3.48613383440118,6.29829844446959,0,0,0,0,0,0,0.144781306667579,0,0.358121926479791,0,0,0,0,20.3275699377971,39.0419561572865,23.9719531961086,28.812797637508,21.0519788045544,0,0,0,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0.496215615637554,0,0,0.512556597022804,0.511707249066704,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,1.54227252690289,0,0,0,0,0,0,0,6.15480300279334,2.62411716559765,0.650756789328606,0,0,0,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0.170453254832202,0.356128142586949,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,11.2165274683847,2.88743956579008,0,0,0,0,5.89877209096643,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0.593929361665277,0,42.7483488539508,58.2371383939523,0,0,1.68900326502395,0.796991953004279,0.828851746593443,0,0,0,0,0,2.50629644545853,0,0.295930216910801,0,0,38.7733098438087,37.3855435592261,53.8957254603224,0,0,0,4.43794448313449,0,0.472775363535873,7.58435421131222,7.58171994796461,9.89662471119766,27.457982960229,61.6247801375835,16.7839909948792,36.4911557773041,28.3725714195406,53.7494223027233,0,0,0.769502585037971,1.02547850262301,0,0.179515288819544,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.796118080530053,1.83309043480088,0,0,0,7.07711896297109,0.802577647298789,23.6607090182593,0,0,3.88448607254548,0.789168805698781,9.67925728389311,44.6866231980516,2.96976924253893,0,0.414752765588989,2.65861549082874,1.323967823502,1.2557316736289,0,7.11523865074482,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,2.64768380074501,12.8809022244904,0,0,62.5510664044082,0,0.160317640503067,11.7399147106644,0,0,0,11.8400548524756,0,0,0,0,0,10.8118110694501,0,18.0126086612937,9.72028190133151,0,0,0,16.1983792737907,0,1.43574604915363,0.599037001496973,0.429226048136571,0.446342914883745,2.95607278941596,0,0,0,0,0,0,0,37.3757954210372,38.817970741799,33.597408029189,36.447950698267,30.7425850141597,0,0,68.6469990235679,6.03782437678679,5.59520521824307,1.57363764404994,0,0.35857467866569,0,39.3082429505352,0.662091970365432,0,0,0.864221491201268,0,0,0,0.340776043570843,0,0.58620893471233,0,13.0575785925166,14.1488883864678,24.8075914932278,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0.157054096250234,36.3287953786464,39.658536093138,39.6855250339605,5.73409195690071,6.43388498913743,13.1023410206319,11.7596339695796,0,0,7.42209867216915,0,26.2267547251854,7.53589348776291,0.149254802886874,0,0,0.189403005275089,0.251567901752575,0,0,0.151230923763239,0.15543720058278,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.428883182749851,0.521988583930423,0,0,0,0,1.54400723580486,0,0.176689145945881,0,0,2.81865670446741,0,0,33.4585415487188,0,0,0,0,8.11050598887274,0.211312123358627,0,0,0,0,0,0,3.73246356019784,37.089367678059,26.3092539807904,0,17.1459131961462,0,0.425149840203366,0.123935764259002,0,0,0,13.609702720853,0,0,57.4209272362348,18.420554922326,33.0442088248303,48.2023455965774,66.5469278025336,38.7972186324262,41.3377652817539,4.28308260777463,0,2.47736419030255,0,0,0.381382095467167,0,1.5913297769302,0.902523940191087,0,3.90757005616546,0,0,0,44.3046555096669,30.4620458459401,33.0698874401895,49.3375003308595,58.5263045649495,0.548257766857182,0.496211178389294,0,0,56.2486927672201,39.6814792218212,15.7811057101524,40.0685456778284,0.0887023701626388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| |||
|short_description=p1@GABRB3 | |||
}} |
Revision as of 06:27, 11 September 2013
Short description: | p1@GABRB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_GABRB3_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 0bp_to_ENST00000311550, ENST00000554556, NM_000814_5end |
EntrezGene: | GABRB3 |
HGNC: | 4083 |
UniProt: | P28472G3V373 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.58e-11 | 8 |
neuron | 7.24e-09 | 6 |
neuroblast | 7.24e-09 | 6 |
electrically signaling cell | 7.24e-09 | 6 |
embryonic stem cell | 3.19e-08 | 5 |
neurectodermal cell | 7.71e-08 | 59 |
neural cell | 4.93e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.