FFCP PHASE1:Hg19::chr13:28543285..28543314,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1045|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=1806|TSSclassifier=S|UniProt=Q99626|association_with_transcript=2bp_to_NM_001265,uc001urv.2_5end|coexpression_cluster_id=C86|description=CAGE_peak_2_at_CDX2_5end|id=chr13:28543285..28543314,-|ontology_enrichment_celltype=CL:0000990!1.22e-09!8;CL:0000451!1.12e-07!10;CL:0000066!3.78e-07!254;CL:0002178!6.10e-07!3;CL:0000453!8.19e-07!5|ontology_enrichment_celltype_v019=CL:0002178;9.89e-11;3!CL:0002563;3.21e-09;4!CL:0002253;1.03e-08;2!CL:0002251;7.47e-08;20!CL:1000415;1.44e-07;2|ontology_enrichment_celltype_v019_2=CL:0002178,1.04e-10,3;CL:0002563,3.17e-09,4;CL:0002253,1.03e-08,2;CL:0002251,7.60e-08,20;CL:1000415,1.37e-07,2;CL:0000223,1.98e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!1.17e-17!106;DOID:0050687!1.24e-14!143;DOID:3119!2.62e-13!14;DOID:162!7.32e-12!235;DOID:14566!2.56e-11!239;DOID:299!2.32e-09!25|ontology_enrichment_disease_v019=DOID:3119;4.37e-15;14!DOID:299;7.85e-10;25!DOID:4929;2.75e-08;2|ontology_enrichment_disease_v019_2=DOID:3119,4.17e-15,14;DOID:305,5.14e-14,106;DOID:0050687,8.11e-12,143;DOID:299,7.89e-10,25;DOID:162,1.32e-08,235;DOID:4929,2.75e-08,2;DOID:14566,2.88e-08,239|ontology_enrichment_uberon=UBERON:0005409!1.75e-31!35;UBERON:0000160!1.37e-29!27;UBERON:0002108!5.06e-18!14;UBERON:0002114!3.11e-14!12;UBERON:0004921!3.13e-14!129;UBERON:0004185!3.13e-14!129;UBERON:0001007!3.22e-14!155;UBERON:0001555!3.22e-14!155;UBERON:0007026!3.22e-14!155;UBERON:0002075!7.70e-14!18;UBERON:0001045!8.60e-14!11;UBERON:0004119!8.84e-13!169;UBERON:0000925!8.84e-13!169;UBERON:0006595!8.84e-13!169;UBERON:0000059!1.67e-12!11;UBERON:0001264!5.58e-12!10;UBERON:0003922!5.58e-12!10;UBERON:0003923!5.58e-12!10;UBERON:0003924!5.58e-12!10;UBERON:0003921!5.58e-12!10;UBERON:0004907!9.45e-12!5;UBERON:0000077!3.82e-10!130;UBERON:0002294!5.73e-10!7;UBERON:0001173!5.73e-10!7;UBERON:0004912!5.73e-10!7;UBERON:0001052!8.13e-10!4;UBERON:0001155!6.66e-09!9;UBERON:0003350!1.45e-07!5;UBERON:0001046!2.20e-07!19;UBERON:0002110!6.48e-07!3;UBERON:0006242!6.48e-07!3|ontology_enrichment_uberon_v019=UBERON:0005409;3.81e-42;22!UBERON:0000160;1.15e-32;17!UBERON:0004921;1.62e-24;33!UBERON:0000059;6.05e-21;11!UBERON:0004907;7.09e-19;5!UBERON:0002075;1.20e-16;18!UBERON:0001052;1.40e-15;4!UBERON:0001155;9.32e-15;9!UBERON:0002108;2.76e-12;4!UBERON:0002294;9.43e-12;7!UBERON:0001173;9.43e-12;7!UBERON:0001264;1.21e-11;10!UBERON:0000945;5.22e-11;5!UBERON:0010039;5.22e-11;5!UBERON:0002110;1.36e-10;3!UBERON:0001242;3.21e-09;4!UBERON:0001262;3.21e-09;4!UBERON:0004786;3.21e-09;4!UBERON:0004808;3.21e-09;4!UBERON:0001277;3.21e-09;4!UBERON:0001555;3.84e-09;54!UBERON:0001007;5.22e-08;81!UBERON:0003350;1.67e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0005409,8.69e-37,25;UBERON:0000160,1.15e-32,17;UBERON:0000059,6.05e-21,11;UBERON:0004907,7.23e-19,5;UBERON:0002075,9.49e-17,18;UBERON:0001052,1.40e-15,4;UBERON:0001155,9.33e-15,9;UBERON:0001007,3.62e-13,145;UBERON:0001555,3.62e-13,145;UBERON:0007026,3.62e-13,145;UBERON:0004921,1.79e-12,118;UBERON:0002108,2.80e-12,4;UBERON:0001264,1.10e-11,10;UBERON:0004119,2.79e-11,160;UBERON:0000925,2.79e-11,160;UBERON:0006595,2.79e-11,160;UBERON:0002110,1.15e-10,3;UBERON:0006242,1.15e-10,3;UBERON:0001242,3.17e-09,4;UBERON:0001262,3.17e-09,4;UBERON:0004786,3.17e-09,4;UBERON:0004808,3.17e-09,4;UBERON:0001277,3.17e-09,4;UBERON:0002294,4.31e-09,9;UBERON:0001173,4.31e-09,9;UBERON:0004912,4.31e-09,9;UBERON:0001046,1.35e-08,19;UBERON:0003350,1.57e-07,8;UBERON:0004458,2.82e-07,49;UBERON:0000945,6.43e-07,8;UBERON:0010039,6.43e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.696518949197069,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,1.62671520017326,0.932949495138334,0.504641701751257,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.9666530242521,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.3473600109736,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,9.55656842326024,0,0,0,0,0,0,0,0,0.561594356226918,0,0,7.51903431270201,0,2.248233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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |||
|TSSclassifier=S | |||
|UniProt=Q99626 | |||
|association_with_transcript=2bp_to_NM_001265,uc001urv.2_5end | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_2_at_CDX2_5end | |||
|id=chr13:28543285..28543314,- | |||
|ontology_enrichment_celltype=CL:0000990!1.22e-09!8;CL:0000451!1.12e-07!10;CL:0000066!3.78e-07!254;CL:0002178!6.10e-07!3;CL:0000453!8.19e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002178;9.89e-11;3!CL:0002563;3.21e-09;4!CL:0002253;1.03e-08;2!CL:0002251;7.47e-08;20!CL:1000415;1.44e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.04e-10,3;CL:0002563,3.17e-09,4;CL:0002253,1.03e-08,2;CL:0002251,7.60e-08,20;CL:1000415,1.37e-07,2;CL:0000223,1.98e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.17e-17!106;DOID:0050687!1.24e-14!143;DOID:3119!2.62e-13!14;DOID:162!7.32e-12!235;DOID:14566!2.56e-11!239;DOID:299!2.32e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:3119;4.37e-15;14!DOID:299;7.85e-10;25!DOID:4929;2.75e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,4.17e-15,14;DOID:305,5.14e-14,106;DOID:0050687,8.11e-12,143;DOID:299,7.89e-10,25;DOID:162,1.32e-08,235;DOID:4929,2.75e-08,2;DOID:14566,2.88e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0005409!1.75e-31!35;UBERON:0000160!1.37e-29!27;UBERON:0002108!5.06e-18!14;UBERON:0002114!3.11e-14!12;UBERON:0004921!3.13e-14!129;UBERON:0004185!3.13e-14!129;UBERON:0001007!3.22e-14!155;UBERON:0001555!3.22e-14!155;UBERON:0007026!3.22e-14!155;UBERON:0002075!7.70e-14!18;UBERON:0001045!8.60e-14!11;UBERON:0004119!8.84e-13!169;UBERON:0000925!8.84e-13!169;UBERON:0006595!8.84e-13!169;UBERON:0000059!1.67e-12!11;UBERON:0001264!5.58e-12!10;UBERON:0003922!5.58e-12!10;UBERON:0003923!5.58e-12!10;UBERON:0003924!5.58e-12!10;UBERON:0003921!5.58e-12!10;UBERON:0004907!9.45e-12!5;UBERON:0000077!3.82e-10!130;UBERON:0002294!5.73e-10!7;UBERON:0001173!5.73e-10!7;UBERON:0004912!5.73e-10!7;UBERON:0001052!8.13e-10!4;UBERON:0001155!6.66e-09!9;UBERON:0003350!1.45e-07!5;UBERON:0001046!2.20e-07!19;UBERON:0002110!6.48e-07!3;UBERON:0006242!6.48e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.81e-42;22!UBERON:0000160;1.15e-32;17!UBERON:0004921;1.62e-24;33!UBERON:0000059;6.05e-21;11!UBERON:0004907;7.09e-19;5!UBERON:0002075;1.20e-16;18!UBERON:0001052;1.40e-15;4!UBERON:0001155;9.32e-15;9!UBERON:0002108;2.76e-12;4!UBERON:0002294;9.43e-12;7!UBERON:0001173;9.43e-12;7!UBERON:0001264;1.21e-11;10!UBERON:0000945;5.22e-11;5!UBERON:0010039;5.22e-11;5!UBERON:0002110;1.36e-10;3!UBERON:0001242;3.21e-09;4!UBERON:0001262;3.21e-09;4!UBERON:0004786;3.21e-09;4!UBERON:0004808;3.21e-09;4!UBERON:0001277;3.21e-09;4!UBERON:0001555;3.84e-09;54!UBERON:0001007;5.22e-08;81!UBERON:0003350;1.67e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,8.69e-37,25;UBERON:0000160,1.15e-32,17;UBERON:0000059,6.05e-21,11;UBERON:0004907,7.23e-19,5;UBERON:0002075,9.49e-17,18;UBERON:0001052,1.40e-15,4;UBERON:0001155,9.33e-15,9;UBERON:0001007,3.62e-13,145;UBERON:0001555,3.62e-13,145;UBERON:0007026,3.62e-13,145;UBERON:0004921,1.79e-12,118;UBERON:0002108,2.80e-12,4;UBERON:0001264,1.10e-11,10;UBERON:0004119,2.79e-11,160;UBERON:0000925,2.79e-11,160;UBERON:0006595,2.79e-11,160;UBERON:0002110,1.15e-10,3;UBERON:0006242,1.15e-10,3;UBERON:0001242,3.17e-09,4;UBERON:0001262,3.17e-09,4;UBERON:0004786,3.17e-09,4;UBERON:0004808,3.17e-09,4;UBERON:0001277,3.17e-09,4;UBERON:0002294,4.31e-09,9;UBERON:0001173,4.31e-09,9;UBERON:0004912,4.31e-09,9;UBERON:0001046,1.35e-08,19;UBERON:0003350,1.57e-07,8;UBERON:0004458,2.82e-07,49;UBERON:0000945,6.43e-07,8;UBERON:0010039,6.43e-07,8 | |||
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|short_description=p2@CDX2 | |||
}} |
Revision as of 01:54, 11 September 2013
Short description: | p2@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 2bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.04e-10 | 3 |
intestinal epithelial cell | 3.17e-09 | 4 |
epithelial cell of large intestine | 1.03e-08 | 2 |
epithelial cell of alimentary canal | 7.60e-08 | 20 |
epithelial cell of gall bladder | 1.37e-07 | 2 |
endodermal cell | 1.98e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 8.69e-37 | 25 |
intestine | 1.15e-32 | 17 |
large intestine | 6.05e-21 | 11 |
lower digestive tract | 7.23e-19 | 5 |
viscus | 9.49e-17 | 18 |
rectum | 1.40e-15 | 4 |
colon | 9.33e-15 | 9 |
digestive system | 3.62e-13 | 145 |
digestive tract | 3.62e-13 | 145 |
primitive gut | 3.62e-13 | 145 |
subdivision of digestive tract | 1.79e-12 | 118 |
small intestine | 2.80e-12 | 4 |
pancreas | 1.10e-11 | 10 |
endoderm-derived structure | 2.79e-11 | 160 |
endoderm | 2.79e-11 | 160 |
presumptive endoderm | 2.79e-11 | 160 |
gallbladder | 1.15e-10 | 3 |
gall bladder primordium | 1.15e-10 | 3 |
intestinal mucosa | 3.17e-09 | 4 |
wall of intestine | 3.17e-09 | 4 |
gastrointestinal system mucosa | 3.17e-09 | 4 |
gastrointestinal system epithelium | 3.17e-09 | 4 |
intestinal epithelium | 3.17e-09 | 4 |
biliary system | 4.31e-09 | 9 |
biliary tree | 4.31e-09 | 9 |
biliary bud | 4.31e-09 | 9 |
hindgut | 1.35e-08 | 19 |
epithelium of mucosa | 1.57e-07 | 8 |
body cavity or lining | 2.82e-07 | 49 |
stomach | 6.43e-07 | 8 |
food storage organ | 6.43e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 4.17e-15 | 14 |
carcinoma | 5.14e-14 | 106 |
cell type cancer | 8.11e-12 | 143 |
adenocarcinoma | 7.89e-10 | 25 |
cancer | 1.32e-08 | 235 |
tubular adenocarcinoma | 2.75e-08 | 2 |
disease of cellular proliferation | 2.88e-08 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.