Personal tools

FF:11286-116I8: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008378
|DRA_sample_Accession=CAGE@DRS008378
|accession_numbers=CAGE;DRX008486;DRR009358;DRZ000783;DRZ002168
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000172
|is_a=EFO:0002091;;FF:0000172
|is_obsolete=
|is_obsolete=
|library_id=CNhs11088
|library_ids=CNhs11088
|library_ids=CNhs11088
|name=Smooth Muscle Cells - Coronary Artery, donor1
|name=Smooth Muscle Cells - Coronary Artery, donor1
Line 87: Line 89:
|top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566
|top_motifs=GTF2A1,2:1.80389289945;EBF1:1.35266679083;HES1:1.33598480427;HOX{A5,B5}:1.25394854712;TLX1..3_NFIC{dimer}:1.23485925202;IKZF1:1.22815829015;CRX:1.19255830006;ZNF148:1.14289357611;PPARG:1.10880195216;SRF:1.06532785826;ZNF238:1.01771266429;NFE2L1:1.0149890277;GCM1,2:0.990196560564;TFCP2:0.982843169845;bHLH_family:0.966236692444;GLI1..3:0.930539690716;ZBTB6:0.839544393121;XCPE1{core}:0.811552962971;TBP:0.799619886644;MYBL2:0.789651872073;LHX3,4:0.776990099977;TEAD1:0.749404443544;HIF1A:0.725199113127;EN1,2:0.718044758108;TP53:0.71159587534;ONECUT1,2:0.693865686834;FOX{I1,J2}:0.683184814705;ZNF423:0.676316814588;FOXL1:0.670782888038;SMAD1..7,9:0.665692663364;NR3C1:0.665023638671;HMX1:0.662493201112;HSF1,2:0.65478217197;TAL1_TCF{3,4,12}:0.613250654332;TFAP4:0.596910426145;NFATC1..3:0.5912860283;TBX4,5:0.581539170069;HAND1,2:0.578348622834;GFI1B:0.568339200736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.566079901326;NFE2L2:0.563308355279;NKX2-2,8:0.539558998566;ADNP_IRX_SIX_ZHX:0.525733361405;HIC1:0.506562089053;PAX8:0.477245481389;TFAP2B:0.47311271283;BACH2:0.46916193268;FOS_FOS{B,L1}_JUN{B,D}:0.464482280389;PBX1:0.424798628833;NHLH1,2:0.415982931557;KLF4:0.415524541992;HOX{A6,A7,B6,B7}:0.378044983057;STAT5{A,B}:0.369040606069;POU2F1..3:0.365697060703;HLF:0.36346263908;GTF2I:0.354471135882;ALX4:0.353227683307;REST:0.347794001641;FOSL2:0.345811414667;SOX{8,9,10}:0.3448821705;LEF1_TCF7_TCF7L1,2:0.342372999044;XBP1:0.33441075797;TFAP2{A,C}:0.325714852812;SOX17:0.324562283346;ZIC1..3:0.321817644901;POU3F1..4:0.276492097803;NR5A1,2:0.275647836858;GZF1:0.274073036931;ELK1,4_GABP{A,B1}:0.260241208053;NKX3-2:0.24951733155;NFIX:0.241775137888;POU1F1:0.235027247156;JUN:0.229818024049;MAFB:0.215421857547;SPZ1:0.214441765258;ZNF384:0.195166145458;ATF6:0.184452981828;MTF1:0.177744115387;NFE2:0.172483928152;SP1:0.170246352605;CEBPA,B_DDIT3:0.164735903556;HNF1A:0.163939348169;PAX5:0.161900793527;HBP1_HMGB_SSRP1_UBTF:0.157148853559;AR:0.146398611897;ESRRA:0.134991994186;CDC5L:0.132628802151;GATA6:0.131162886623;FOXQ1:0.127704347978;MZF1:0.119449440641;TLX2:0.0845418879426;MEF2{A,B,C,D}:0.0606931397381;PRRX1,2:0.0509369953436;PAX1,9:0.0214603315937;NANOG:0.00810515672433;RXRA_VDR{dimer}:0.000424609325412;ETS1,2:-0.00421269421151;PATZ1:-0.00630635695353;VSX1,2:-0.010738747491;DBP:-0.0382390334368;MTE{core}:-0.0436571159531;RXR{A,B,G}:-0.050999670895;MYFfamily:-0.0576791864109;NFKB1_REL_RELA:-0.069179494039;GATA4:-0.0794849086075;HMGA1,2:-0.0798406713757;NFIL3:-0.0809585538774;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0988148024733;HOX{A4,D4}:-0.107873480749;PAX2:-0.11128735843;SOX2:-0.114153426221;EP300:-0.119665551371;EVI1:-0.12615648678;RREB1:-0.132094903122;RUNX1..3:-0.144132334824;ESR1:-0.155188141934;UFEwm:-0.157097500485;POU6F1:-0.176029021274;PRDM1:-0.177664971634;RFX1:-0.181328543821;ELF1,2,4:-0.205594964785;POU5F1:-0.206706226374;STAT2,4,6:-0.207518632291;MAZ:-0.207812469169;MED-1{core}:-0.213621356347;FOXM1:-0.217223507733;ZNF143:-0.236159316593;EGR1..3:-0.240326338415;ARID5B:-0.254069833094;YY1:-0.273904476771;HNF4A_NR2F1,2:-0.274021157453;LMO2:-0.295034270547;TFDP1:-0.317221477967;HOXA9_MEIS1:-0.339351591347;SPIB:-0.340053051062;NANOG{mouse}:-0.342523145441;MYOD1:-0.366439629439;SPI1:-0.366441738426;TGIF1:-0.373143031276;PAX6:-0.376023576274;MYB:-0.378708019066;AIRE:-0.380495340574;GFI1:-0.386966642804;NKX2-3_NKX2-5:-0.389997831399;NRF1:-0.419480055255;ZFP161:-0.44687577285;NR6A1:-0.477527085488;FOXD3:-0.483756739424;ALX1:-0.484829784711;NKX3-1:-0.516638500543;SNAI1..3:-0.529899840483;TOPORS:-0.532415220351;OCT4_SOX2{dimer}:-0.535613470713;FOXA2:-0.538499942163;DMAP1_NCOR{1,2}_SMARC:-0.550639147213;AHR_ARNT_ARNT2:-0.57347505864;E2F1..5:-0.574521954307;NFY{A,B,C}:-0.583073108996;PAX3,7:-0.587128677531;PITX1..3:-0.606919936624;ATF2:-0.611683400381;IRF1,2:-0.614243646443;RORA:-0.621236268392;FOXO1,3,4:-0.627067461816;ZEB1:-0.63543813477;FOX{F1,F2,J1}:-0.636734455766;NR1H4:-0.640568914809;T:-0.667007399548;SOX5:-0.685069048249;FOX{D1,D2}:-0.733377898689;ATF5_CREB3:-0.738764022853;TEF:-0.755470075868;IRF7:-0.799381430589;CUX2:-0.894255122115;SREBF1,2:-0.928819888904;IKZF2:-0.937303287595;BREu{core}:-0.938760029083;NKX2-1,4:-0.979344716745;CREB1:-1.01607641453;RFX2..5_RFXANK_RFXAP:-1.02943490381;PAX4:-1.06340919209;FOXP1:-1.09255300232;ATF4:-1.10892225653;PDX1:-1.17726224531;NKX6-1,2:-1.18261547836;FOXP3:-1.19246167275;CDX1,2,4:-1.28095421021;STAT1,3:-1.29988434909;BPTF:-1.35075992515;RBPJ:-1.40466635517;FOXN1:-1.41191197633;ZBTB16:-1.51343772566
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008378
|accession_numbers=DRX008486;DRR009358;DRZ000783;DRZ002168;CAGE
|library_id=CNhs11088
}}
}}

Revision as of 19:42, 17 October 2013


Name:Smooth Muscle Cells - Coronary Artery, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11088
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuecoronary artery
dev stage41 years old adult
sexfemale
age41
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1346
catalog numberCA350-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008378
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11088 CAGE DRX008486 DRR009358
Accession ID Hg19

Library idBAMCTSS
CNhs11088 DRZ000783 DRZ002168
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.163
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.186
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.147
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0562
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.411
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.496
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.071
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.206
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.192
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0506
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.183
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0166
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.345
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.08
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.433
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.837
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.206
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.147
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11088

Jaspar motifP-value
MA0002.20.288
MA0003.10.234
MA0004.10.967
MA0006.10.186
MA0007.10.205
MA0009.10.386
MA0014.10.977
MA0017.10.439
MA0018.29.63559e-4
MA0019.10.468
MA0024.11.03643e-5
MA0025.10.9
MA0027.10.766
MA0028.10.677
MA0029.10.209
MA0030.10.213
MA0031.10.0269
MA0035.20.409
MA0038.10.602
MA0039.20.364
MA0040.10.484
MA0041.10.308
MA0042.10.786
MA0043.10.00623
MA0046.10.458
MA0047.20.651
MA0048.10.57
MA0050.18.42175e-5
MA0051.10.265
MA0052.10.631
MA0055.10.46
MA0057.10.0968
MA0058.10.885
MA0059.10.208
MA0060.10.106
MA0061.10.509
MA0062.20.36
MA0065.20.626
MA0066.10.3
MA0067.10.0232
MA0068.10.791
MA0069.10.939
MA0070.10.543
MA0071.10.666
MA0072.10.615
MA0073.10.677
MA0074.10.584
MA0076.10.595
MA0077.10.136
MA0078.10.177
MA0079.20.258
MA0080.20.0589
MA0081.10.765
MA0083.17.89274e-6
MA0084.10.823
MA0087.10.673
MA0088.10.407
MA0090.10.00109
MA0091.10.111
MA0092.10.102
MA0093.10.893
MA0099.26.34839e-17
MA0100.10.075
MA0101.10.8
MA0102.20.0461
MA0103.10.268
MA0104.20.414
MA0105.10.569
MA0106.10.206
MA0107.10.367
MA0108.22.71274e-8
MA0111.10.0587
MA0112.20.049
MA0113.10.087
MA0114.10.695
MA0115.10.793
MA0116.10.356
MA0117.10.278
MA0119.10.0568
MA0122.10.692
MA0124.10.448
MA0125.10.981
MA0131.10.436
MA0135.10.793
MA0136.10.347
MA0137.20.32
MA0138.20.893
MA0139.10.772
MA0140.10.226
MA0141.10.418
MA0142.10.716
MA0143.10.521
MA0144.10.512
MA0145.10.102
MA0146.10.247
MA0147.10.899
MA0148.10.704
MA0149.10.631
MA0150.10.0455
MA0152.10.398
MA0153.10.423
MA0154.10.194
MA0155.10.0373
MA0156.10.682
MA0157.10.298
MA0159.10.231
MA0160.10.569
MA0162.10.0995
MA0163.10.202
MA0164.10.632
MA0258.10.279
MA0259.10.661



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11088

Novel motifP-value
10.905
100.144
1000.9
1010.637
1020.95
1030.524
1040.339
1050.378
1060.0454
1070.0273
1080.608
1090.0876
110.101
1100.504
1110.448
1120.624
1130.215
1140.314
1150.688
1160.0643
1170.799
1180.697
1190.34
120.697
1200.203
1210.421
1220.428
1230.0341
1240.961
1250.69
1260.902
1270.732
1280.204
1290.601
130.985
1300.245
1310.137
1320.409
1330.911
1340.15
1350.246
1360.852
1370.297
1380.494
1390.32
140.553
1400.585
1410.42
1420.941
1430.0365
1440.999
1450.17
1460.363
1470.192
1480.914
1490.153
150.684
1500.128
1510.482
1520.00846
1530.396
1540.25
1550.0162
1560.96
1570.833
1580.0311
1590.286
160.249
1600.0936
1610.567
1620.755
1630.941
1640.856
1650.559
1660.753
1670.466
1680.478
1690.0682
170.103
180.12
190.159
20.397
200.353
210.584
220.142
230.145
240.198
250.272
260.264
270.484
280.227
290.861
30.519
300.118
310.52
320.0451
330.846
340.201
350.924
360.781
370.154
380.541
390.255
40.744
400.159
410.795
420.649
430.387
440.829
450.172
460.257
470.406
480.18
490.683
50.766
500.395
510.773
520.554
530.609
540.502
550.259
560.511
570.588
580.548
590.0937
60.741
600.592
610.938
620.706
630.274
640.503
650.144
660.391
670.996
680.291
690.359
70.813
700.279
710.304
720.825
730.0037
740.699
750.563
760.346
770.00375
780.603
790.337
80.0866
800.303
810.806
820.639
830.988
840.97
850.149
860.879
870.0275
880.182
890.0659
90.149
900.136
910.46
920.569
930.903
940.769
950.111
960.898
970.25
980.856
990.00571



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11088


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11286-116I8&oldid=3078982"