FFCP PHASE1:Mm9::chr16:48772149..48772164,-: Difference between revisions
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{{FFCP|EntrezGene=77647|HGNC=|MCL_coexpression_id=33|UniProt=Q3UU67|association_with_transcript=-80bp_to_ENSMUST00000170861,NM_198297,uc007zjr.1,uc007zjs.1_5end|description=CAGE_peak_3_at_Trat1_5end|id=chr16:48772149..48772164,-|ontology_enrichment_celltype=CL:0000838!4.76e-17!12;CL:0000084!2.99e-16!11;CL:0000827!2.99e-16!11;CL:0000542!1.81e-15!13;CL:0000051!1.81e-15!13;CL:0000791!7.97e-14!9;CL:0000789!7.97e-14!9;CL:0002420!7.97e-14!9;CL:0002419!7.97e-14!9;CL:0000790!7.97e-14!9;CL:0000624!1.80e-12!8;CL:0002031!3.15e-12!25;CL:0000738!4.98e-11!17;CL:0002087!4.98e-11!17;CL:0000893!1.03e-09!6;CL:0002489!1.03e-09!6;CL:0000898!1.03e-09!6;CL:0000809!1.03e-09!6;CL:0000810!1.03e-09!6;CL:0000895!1.03e-09!6;CL:0000808!1.03e-09!6;CL:0000894!1.03e-09!6;CL:0000806!1.03e-09!6;CL:0000807!1.03e-09!6;CL:0000805!1.03e-09!6;CL:0002425!1.03e-09!6;CL:0002436!1.03e-09!6;CL:0002427!1.03e-09!6;CL:0002428!1.03e-09!6;CL:0002429!1.03e-09!6;CL:0002433!1.03e-09!6;CL:0002431!1.03e-09!6;CL:0002432!1.03e-09!6;CL:0000988!1.27e-09!32;CL:0002032!1.27e-09!32;CL:0000037!1.27e-09!32;CL:0000566!1.27e-09!32;CL:0000837!1.27e-09!32|ontology_enrichment_celltype_v019_2=CL:0000791,1.64e-30,9;CL:0000789,1.64e-30,9;CL:0002420,1.64e-30,9;CL:0002419,1.64e-30,9;CL:0000790,1.64e-30,9;CL:0000084,3.09e-30,11;CL:0000827,3.09e-30,11;CL:0000838,1.39e-27,12;CL:0000624,2.66e-27,8;CL:0000542,2.44e-25,13;CL:0000051,2.44e-25,13;CL:0000893,8.82e-21,6;CL:0002489,8.82e-21,6;CL:0000898,8.82e-21,6;CL:0000809,8.82e-21,6;CL:0000810,8.82e-21,6;CL:0000895,8.82e-21,6;CL:0000808,8.82e-21,6;CL:0000894,8.82e-21,6;CL:0000806,8.82e-21,6;CL:0000807,8.82e-21,6;CL:0000805,8.82e-21,6;CL:0002425,8.82e-21,6;CL:0002436,8.82e-21,6;CL:0002427,8.82e-21,6;CL:0002428,8.82e-21,6;CL:0002429,8.82e-21,6;CL:0002433,8.82e-21,6;CL:0002431,8.82e-21,6;CL:0002432,8.82e-21,6;CL:0000738,5.37e-19,17;CL:0002087,5.37e-19,17;CL:0002031,5.83e-15,25;CL:0000988,2.84e-11,32;CL:0002032,2.84e-11,32;CL:0000037,2.84e-11,32;CL:0000837,2.84e-11,32;CL:0002320,2.86e-07,46;CL:0000134,2.86e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!3.60e-31!29;UBERON:0002370!4.40e-25!23;UBERON:0000974!4.40e-25!23;UBERON:0004807!4.40e-25!23;UBERON:0005058!4.40e-25!23;UBERON:0003351!4.40e-25!23;UBERON:0009113!4.40e-25!23;UBERON:0003295!4.40e-25!23;UBERON:0009722!4.40e-25!23;UBERON:0005562!4.40e-25!23;UBERON:0007690!4.40e-25!23;UBERON:0002390!4.67e-24!45;UBERON:0003061!4.67e-24!45;UBERON:0002193!7.37e-24!48;UBERON:0006562!9.28e-24!24;UBERON:0003408!9.28e-24!24;UBERON:0001557!9.28e-24!24;UBERON:0001042!9.28e-24!24;UBERON:0008814!9.28e-24!24;UBERON:0009145!9.28e-24!24;UBERON:0000072!2.20e-20!27;UBERON:0000065!1.66e-18!41;UBERON:0001004!7.07e-18!42;UBERON:0000063!8.71e-16!35;UBERON:0005057!1.63e-15!51;UBERON:0002405!1.61e-14!70;UBERON:0003081!3.69e-11!88;UBERON:0001041!2.16e-09!92;UBERON:0005911!7.92e-09!69;UBERON:0000064!9.16e-09!99;UBERON:0000077!1.88e-08!97;UBERON:0003929!8.76e-08!55;UBERON:0004921!2.18e-07!126;UBERON:0004185!2.18e-07!126;UBERON:0002106!3.76e-07!6;UBERON:0004457!3.76e-07!6;UBERON:0000042!3.76e-07!6;UBERON:0004854!3.76e-07!6;UBERON:0009034!3.76e-07!6;UBERON:0002095!3.76e-07!6;UBERON:0004782!3.76e-07!6;UBERON:0003281!3.76e-07!6;UBERON:0009664!3.76e-07!6;UBERON:0002296!3.76e-07!6;UBERON:0005602!3.76e-07!6;UBERON:0001179!3.76e-07!6;UBERON:0006293!3.76e-07!6;UBERON:0001007!4.02e-07!128;UBERON:0001555!4.02e-07!128;UBERON:0007026!4.02e-07!128;UBERON:0004119!7.27e-07!130;UBERON:0000925!7.27e-07!130;UBERON:0006595!7.27e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.75e-54,23;UBERON:0000974,2.75e-54,23;UBERON:0004807,2.75e-54,23;UBERON:0005058,2.75e-54,23;UBERON:0003351,2.75e-54,23;UBERON:0009113,2.75e-54,23;UBERON:0003295,2.75e-54,23;UBERON:0009722,2.75e-54,23;UBERON:0005562,2.75e-54,23;UBERON:0007690,2.75e-54,23;UBERON:0006562,6.94e-52,24;UBERON:0003408,6.94e-52,24;UBERON:0001557,6.94e-52,24;UBERON:0001042,6.94e-52,24;UBERON:0008814,6.94e-52,24;UBERON:0009145,6.94e-52,24;UBERON:0000072,9.56e-46,27;UBERON:0004177,2.34e-42,29;UBERON:0005057,2.34e-42,29;UBERON:0000077,1.64e-34,35;UBERON:0007811,1.86e-33,36;UBERON:0002193,7.12e-30,48;UBERON:0002405,7.12e-30,48;UBERON:0000065,5.90e-29,41;UBERON:0002390,5.95e-29,45;UBERON:0003061,5.95e-29,45;UBERON:0001004,3.49e-28,42;UBERON:0000153,1.90e-27,43;UBERON:0003929,1.08e-20,55;UBERON:0002368,1.12e-18,60;UBERON:0002530,5.77e-17,65;UBERON:0000490,1.18e-16,66;UBERON:0005911,8.94e-16,69;UBERON:0000949,5.72e-15,72;UBERON:0003081,3.31e-13,87;UBERON:0001041,4.11e-13,80;UBERON:0000926,1.54e-08,120;UBERON:0004120,1.54e-08,120;UBERON:0006603,1.54e-08,120;UBERON:0004921,4.04e-08,114;UBERON:0001007,6.45e-08,116;UBERON:0001555,6.45e-08,116;UBERON:0007026,6.45e-08,116;UBERON:0004119,1.01e-07,118;UBERON:0000925,1.01e-07,118;UBERON:0006595,1.01e-07,118;UBERON:0002384,2.86e-07,46|phase1_expression=0,0,0,0,0,0,0,7.36002943616985,1.40788722151667,2.80877431586392,3.5955773327356,2.87179772383211,13.1824562047028,13.8998439846206,0,0,1.39912375625629,0.473193248037357,0.685572168028694,0.42438965179803,0.17008658030214,0.794327609607082,1.04479915655574,0,0,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,5.07753499407941,5.04140698713696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,4.91981978929626,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0.255457055208591,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233530684734339,0,0,0.0810688095458557,0,0,0,0,0,0.991256348951394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0.502518772325447,0,0,0,0,0,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0.161464426695906,0,0,0.164140899745061,0,0,0.170870880797853,0.206386867963223,0.185194527369712,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8047673233443,0.202725215290164,1.84879722896689,4.15746633528944,5.37080087002444,9.53670502950071,7.93289966831794,11.8151621739662,11.5101752940888,9.98309167180498,12.0991422164209,12.7669823769076,14.1431407211284,15.5446279901487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0.0941093804153306,0.169229215783353,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0|short_description=p3@Trat1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:77647 | |||
|HGNC= | |||
|MCL_coexpression_id=33 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q3UU67 | |||
|association_with_transcript=-80bp_to_ENSMUST00000170861,NM_198297,uc007zjr.1,uc007zjs.1_5end | |||
|cluster_id=chr16:48772149..48772164,- | |||
|description=CAGE_peak_3_at_Trat1_5end | |||
|id=chr16:48772149..48772164,- | |||
|ontology_enrichment_celltype=CL:0000838!4.76e-17!12;CL:0000084!2.99e-16!11;CL:0000827!2.99e-16!11;CL:0000542!1.81e-15!13;CL:0000051!1.81e-15!13;CL:0000791!7.97e-14!9;CL:0000789!7.97e-14!9;CL:0002420!7.97e-14!9;CL:0002419!7.97e-14!9;CL:0000790!7.97e-14!9;CL:0000624!1.80e-12!8;CL:0002031!3.15e-12!25;CL:0000738!4.98e-11!17;CL:0002087!4.98e-11!17;CL:0000893!1.03e-09!6;CL:0002489!1.03e-09!6;CL:0000898!1.03e-09!6;CL:0000809!1.03e-09!6;CL:0000810!1.03e-09!6;CL:0000895!1.03e-09!6;CL:0000808!1.03e-09!6;CL:0000894!1.03e-09!6;CL:0000806!1.03e-09!6;CL:0000807!1.03e-09!6;CL:0000805!1.03e-09!6;CL:0002425!1.03e-09!6;CL:0002436!1.03e-09!6;CL:0002427!1.03e-09!6;CL:0002428!1.03e-09!6;CL:0002429!1.03e-09!6;CL:0002433!1.03e-09!6;CL:0002431!1.03e-09!6;CL:0002432!1.03e-09!6;CL:0000988!1.27e-09!32;CL:0002032!1.27e-09!32;CL:0000037!1.27e-09!32;CL:0000566!1.27e-09!32;CL:0000837!1.27e-09!32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.64e-30,9;CL:0000789,1.64e-30,9;CL:0002420,1.64e-30,9;CL:0002419,1.64e-30,9;CL:0000790,1.64e-30,9;CL:0000084,3.09e-30,11;CL:0000827,3.09e-30,11;CL:0000838,1.39e-27,12;CL:0000624,2.66e-27,8;CL:0000542,2.44e-25,13;CL:0000051,2.44e-25,13;CL:0000893,8.82e-21,6;CL:0002489,8.82e-21,6;CL:0000898,8.82e-21,6;CL:0000809,8.82e-21,6;CL:0000810,8.82e-21,6;CL:0000895,8.82e-21,6;CL:0000808,8.82e-21,6;CL:0000894,8.82e-21,6;CL:0000806,8.82e-21,6;CL:0000807,8.82e-21,6;CL:0000805,8.82e-21,6;CL:0002425,8.82e-21,6;CL:0002436,8.82e-21,6;CL:0002427,8.82e-21,6;CL:0002428,8.82e-21,6;CL:0002429,8.82e-21,6;CL:0002433,8.82e-21,6;CL:0002431,8.82e-21,6;CL:0002432,8.82e-21,6;CL:0000738,5.37e-19,17;CL:0002087,5.37e-19,17;CL:0002031,5.83e-15,25;CL:0000988,2.84e-11,32;CL:0002032,2.84e-11,32;CL:0000037,2.84e-11,32;CL:0000837,2.84e-11,32;CL:0002320,2.86e-07,46;CL:0000134,2.86e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!3.60e-31!29;UBERON:0002370!4.40e-25!23;UBERON:0000974!4.40e-25!23;UBERON:0004807!4.40e-25!23;UBERON:0005058!4.40e-25!23;UBERON:0003351!4.40e-25!23;UBERON:0009113!4.40e-25!23;UBERON:0003295!4.40e-25!23;UBERON:0009722!4.40e-25!23;UBERON:0005562!4.40e-25!23;UBERON:0007690!4.40e-25!23;UBERON:0002390!4.67e-24!45;UBERON:0003061!4.67e-24!45;UBERON:0002193!7.37e-24!48;UBERON:0006562!9.28e-24!24;UBERON:0003408!9.28e-24!24;UBERON:0001557!9.28e-24!24;UBERON:0001042!9.28e-24!24;UBERON:0008814!9.28e-24!24;UBERON:0009145!9.28e-24!24;UBERON:0000072!2.20e-20!27;UBERON:0000065!1.66e-18!41;UBERON:0001004!7.07e-18!42;UBERON:0000063!8.71e-16!35;UBERON:0005057!1.63e-15!51;UBERON:0002405!1.61e-14!70;UBERON:0003081!3.69e-11!88;UBERON:0001041!2.16e-09!92;UBERON:0005911!7.92e-09!69;UBERON:0000064!9.16e-09!99;UBERON:0000077!1.88e-08!97;UBERON:0003929!8.76e-08!55;UBERON:0004921!2.18e-07!126;UBERON:0004185!2.18e-07!126;UBERON:0002106!3.76e-07!6;UBERON:0004457!3.76e-07!6;UBERON:0000042!3.76e-07!6;UBERON:0004854!3.76e-07!6;UBERON:0009034!3.76e-07!6;UBERON:0002095!3.76e-07!6;UBERON:0004782!3.76e-07!6;UBERON:0003281!3.76e-07!6;UBERON:0009664!3.76e-07!6;UBERON:0002296!3.76e-07!6;UBERON:0005602!3.76e-07!6;UBERON:0001179!3.76e-07!6;UBERON:0006293!3.76e-07!6;UBERON:0001007!4.02e-07!128;UBERON:0001555!4.02e-07!128;UBERON:0007026!4.02e-07!128;UBERON:0004119!7.27e-07!130;UBERON:0000925!7.27e-07!130;UBERON:0006595!7.27e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.75e-54,23;UBERON:0000974,2.75e-54,23;UBERON:0004807,2.75e-54,23;UBERON:0005058,2.75e-54,23;UBERON:0003351,2.75e-54,23;UBERON:0009113,2.75e-54,23;UBERON:0003295,2.75e-54,23;UBERON:0009722,2.75e-54,23;UBERON:0005562,2.75e-54,23;UBERON:0007690,2.75e-54,23;UBERON:0006562,6.94e-52,24;UBERON:0003408,6.94e-52,24;UBERON:0001557,6.94e-52,24;UBERON:0001042,6.94e-52,24;UBERON:0008814,6.94e-52,24;UBERON:0009145,6.94e-52,24;UBERON:0000072,9.56e-46,27;UBERON:0004177,2.34e-42,29;UBERON:0005057,2.34e-42,29;UBERON:0000077,1.64e-34,35;UBERON:0007811,1.86e-33,36;UBERON:0002193,7.12e-30,48;UBERON:0002405,7.12e-30,48;UBERON:0000065,5.90e-29,41;UBERON:0002390,5.95e-29,45;UBERON:0003061,5.95e-29,45;UBERON:0001004,3.49e-28,42;UBERON:0000153,1.90e-27,43;UBERON:0003929,1.08e-20,55;UBERON:0002368,1.12e-18,60;UBERON:0002530,5.77e-17,65;UBERON:0000490,1.18e-16,66;UBERON:0005911,8.94e-16,69;UBERON:0000949,5.72e-15,72;UBERON:0003081,3.31e-13,87;UBERON:0001041,4.11e-13,80;UBERON:0000926,1.54e-08,120;UBERON:0004120,1.54e-08,120;UBERON:0006603,1.54e-08,120;UBERON:0004921,4.04e-08,114;UBERON:0001007,6.45e-08,116;UBERON:0001555,6.45e-08,116;UBERON:0007026,6.45e-08,116;UBERON:0004119,1.01e-07,118;UBERON:0000925,1.01e-07,118;UBERON:0006595,1.01e-07,118;UBERON:0002384,2.86e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0,7.36002943616985,1.40788722151667,2.80877431586392,3.5955773327356,2.87179772383211,13.1824562047028,13.8998439846206,0,0,1.39912375625629,0.473193248037357,0.685572168028694,0.42438965179803,0.17008658030214,0.794327609607082,1.04479915655574,0,0,0,0,0,0.380046838912748,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,5.07753499407941,5.04140698713696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,4.91981978929626,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0.255457055208591,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233530684734339,0,0,0.0810688095458557,0,0,0,0,0,0.991256348951394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0.554259570499814,0,0,0,0,0.502518772325447,0,0,0,0,0,0.327726629431476,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0.161464426695906,0,0,0.164140899745061,0,0,0.170870880797853,0.206386867963223,0.185194527369712,0.188368457004691,0.27338845544205,0.228778173206523,0,0,0,0,0.158167996790568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.8047673233443,0.202725215290164,1.84879722896689,4.15746633528944,5.37080087002444,9.53670502950071,7.93289966831794,11.8151621739662,11.5101752940888,9.98309167180498,12.0991422164209,12.7669823769076,14.1431407211284,15.5446279901487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0.147198920134397,0,0,0,0.145346416632329,0.0941093804153306,0.169229215783353,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p3@Trat1 | |||
}} |
Revision as of 21:39, 3 August 2015
Short description: | p3@Trat1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Trat1_5end |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | -80bp_to_ENSMUST00000170861, NM_198297, uc007zjr.1, uc007zjs.1_5end |
EntrezGene: | 77647 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data