FFCP PHASE1:Hg19::chr19:39303576..39303591,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6565 | |||
|TSSclassifier=not | |||
|UniProt=P56470,Q6FHZ4 | |||
|association_with_transcript=148bp_to_ENST00000307751,NM_006149,uc002ojg.2,uc010xuj.1_5end | |||
|coexpression_cluster_id=C201 | |||
|description=CAGE_peak_1_at_LGALS4_5end | |||
|id=chr19:39303576..39303591,- | |||
|ontology_enrichment_celltype=CL:0002322!1.47e-09!5 | |||
|ontology_enrichment_celltype_v019=CL:0002178;3.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,3.37e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.59e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.68e-10;2!DOID:4929;3.86e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.68e-10,2;DOID:4929,3.86e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.82e-17!129;UBERON:0004185!1.82e-17!129;UBERON:0005409!1.50e-16!35;UBERON:0001007!1.88e-16!155;UBERON:0001555!1.88e-16!155;UBERON:0007026!1.88e-16!155;UBERON:0007023!4.91e-15!115;UBERON:0004119!5.16e-15!169;UBERON:0000925!5.16e-15!169;UBERON:0006595!5.16e-15!169;UBERON:0000160!2.33e-13!27;UBERON:0000077!7.57e-12!130;UBERON:0003929!1.24e-09!54;UBERON:0000059!1.24e-09!11;UBERON:0005911!1.31e-09!82;UBERON:0003135!1.06e-08!11;UBERON:0005177!2.69e-08!107;UBERON:0000062!7.32e-08!511;UBERON:0003101!1.37e-07!22;UBERON:0000079!1.37e-07!22;UBERON:0000481!1.54e-07!347;UBERON:0001046!1.66e-07!19;UBERON:0000466!1.99e-07!126;UBERON:0000922!2.12e-07!612;UBERON:0004907!2.51e-07!5;UBERON:0001041!2.51e-07!98;UBERON:0009497!2.58e-07!25;UBERON:0000015!2.58e-07!25;UBERON:0002423!2.58e-07!25;UBERON:0006235!2.58e-07!25;UBERON:0004161!2.58e-07!25;UBERON:0006947!4.44e-07!3;UBERON:0004054!4.44e-07!3;UBERON:0003104!5.22e-07!238;UBERON:0009142!5.22e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.43e-32;22!UBERON:0000160;1.70e-24;17!UBERON:0004921;6.08e-22;33!UBERON:0002108;2.35e-15;4!UBERON:0000059;8.44e-11;11!UBERON:0002423;1.84e-10;25!UBERON:0001007;3.01e-09;81!UBERON:0000945;5.26e-09;5!UBERON:0010039;5.26e-09;5!UBERON:0001155;8.01e-09;9!UBERON:0002107;4.41e-08;19!UBERON:0006925;4.41e-08;19!UBERON:0001555;1.06e-07;54!UBERON:0002114;4.85e-07;2!UBERON:0000922;9.44e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,6.80e-28,25;UBERON:0000160,1.71e-24,17;UBERON:0004921,3.52e-18,118;UBERON:0001007,1.51e-16,145;UBERON:0001555,1.51e-16,145;UBERON:0007026,1.51e-16,145;UBERON:0004119,1.01e-15,160;UBERON:0000925,1.01e-15,160;UBERON:0006595,1.01e-15,160;UBERON:0002108,2.35e-15,4;UBERON:0009854,1.92e-11,23;UBERON:0000059,8.44e-11,11;UBERON:0009497,1.84e-10,25;UBERON:0000015,1.84e-10,25;UBERON:0002423,1.84e-10,25;UBERON:0006235,1.84e-10,25;UBERON:0004161,1.84e-10,25;UBERON:0009856,5.63e-10,26;UBERON:0008835,3.34e-09,22;UBERON:0003894,3.34e-09,22;UBERON:0001155,8.01e-09,9;UBERON:0011216,1.74e-08,223;UBERON:0002107,4.41e-08,19;UBERON:0006925,4.41e-08,19;UBERON:0008836,4.41e-08,19;UBERON:0007499,5.52e-08,25;UBERON:0003929,6.76e-08,54;UBERON:0005177,1.01e-07,101;UBERON:0005911,1.37e-07,82;UBERON:0007023,1.72e-07,114;UBERON:0001041,4.32e-07,87;UBERON:0002114,4.86e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,205.343156411366,30.4676437170064,26.5855458006632,0,17.8333235887515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.5896028752833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.9103023312757,0,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1956.74149050835,0,0,0,0,0,0,0,0,0,0,0,0,1.59398390600856,691.538640574463,19.3988215847793,0.102268682502155,0,0,0,0.716084698702437,0,6.90503839458535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,3540.14668884624,1453.44624235437,3642.96172409427,0,0,0,0.539209063845416,0.802577647298789,0,0,0,0,0.394584402849391,1068.3480227097,0.30607276163049,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0,0,1.92199335066233,0,0.0967563312890851,0,0.0821154570532092,2.81268147816416,0,0,0,0,0.0633107959558787,0.977756913674015,0,1277.30272052029,0,987.451628757088,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0,0.458320848023367,0,0.599037001496973,0,0,0,0,0,0,0,0,93.2108249944671,0,0,0,0,0,0,0,0,0,0,1.10327990218877,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,124.129741925336,3.97520666736664,0,0,1.88195521672762,0,0,0.157204305099666,14.0841278818046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192687675289379,0,0,0,0.504143392443436,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,53.1429527638503,0,0,6.80137996598408,0.0675375846183947,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70958557103084,0,0.280272163313789,291.297631842529,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0.223710863595585,64.5828537188299,1643.33171083601,0.647428837187895,0,0,2.91426595835484,0,0,0.118920090777569,0,0.219881033490858,0,2349.02702448962,1053.23852206857,0,1.96118657403124,0,0,0,4.226557275834,0,0.0939839179798536,0,0,0,0,0,127.078531554894,0,0,0,0,0,922.622809858858,0,0,0,0,0,0,0.61193297845189,1.60330443159336,0.459474497674225,0,0,0,0,0,0.426467963801962,0,0.322944549180031,0.558672428662721,0,0.0636471582781649,1.0105859447911,0.435433495793923,0,0,6.52672069073355,0.332660356546013,0,0,0,830.344168273289,11.7320471201727,0.366724332548599,0,0.665756774185513,0.201273793591026,0 | |||
|short_description=p1@LGALS4 | |||
}} |
Revision as of 23:09, 20 January 2014
Short description: | p1@LGALS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LGALS4_5end |
Coexpression cluster: | C201_colon_small_adenocarcinoma_duodenum_temporal_signet_gall |
Association with transcript: | 148bp_to_ENST00000307751, NM_006149, uc002ojg.2, uc010xuj.1_5end |
EntrezGene: | LGALS4 |
HGNC: | 6565 |
UniProt: | P56470Q6FHZ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 3.37e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 6.80e-28 | 25 |
intestine | 1.71e-24 | 17 |
subdivision of digestive tract | 3.52e-18 | 118 |
digestive system | 1.51e-16 | 145 |
digestive tract | 1.51e-16 | 145 |
primitive gut | 1.51e-16 | 145 |
endoderm-derived structure | 1.01e-15 | 160 |
endoderm | 1.01e-15 | 160 |
presumptive endoderm | 1.01e-15 | 160 |
small intestine | 2.35e-15 | 4 |
digestive tract diverticulum | 1.92e-11 | 23 |
large intestine | 8.44e-11 | 11 |
epithelium of foregut-midgut junction | 1.84e-10 | 25 |
anatomical boundary | 1.84e-10 | 25 |
hepatobiliary system | 1.84e-10 | 25 |
foregut-midgut junction | 1.84e-10 | 25 |
septum transversum | 1.84e-10 | 25 |
sac | 5.63e-10 | 26 |
hepatic diverticulum | 3.34e-09 | 22 |
liver primordium | 3.34e-09 | 22 |
colon | 8.01e-09 | 9 |
organ system subdivision | 1.74e-08 | 223 |
liver | 4.41e-08 | 19 |
digestive gland | 4.41e-08 | 19 |
liver bud | 4.41e-08 | 19 |
epithelial sac | 5.52e-08 | 25 |
gut epithelium | 6.76e-08 | 54 |
trunk region element | 1.01e-07 | 101 |
endo-epithelium | 1.37e-07 | 82 |
adult organism | 1.72e-07 | 114 |
foregut | 4.32e-07 | 87 |
duodenum | 4.86e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.68e-10 | 2 |
tubular adenocarcinoma | 3.86e-10 | 2 |