FFCP PHASE1:Hg19::chr14:22928012..22928031,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-57bp_to_uc001wea.3,uc010ajt.2,uc010aju.1_5end | |||
|coexpression_cluster_id=C28 | |||
|description=CAGE_peak_3_at_uc001wea.3_5end,CAGE_peak_3_at_uc010ajt.2_5end,CAGE_peak_3_at_uc010aju.1_5end | |||
|id=chr14:22928012..22928031,+ | |||
|ontology_enrichment_celltype=CL:0002127!2.06e-13!1;CL:0000914!2.06e-13!1;CL:0000911!2.06e-13!1;CL:0000814!2.06e-13!1;CL:0002042!2.06e-13!1;CL:0002039!2.06e-13!1;CL:0002040!2.06e-13!1;CL:0002041!2.06e-13!1;CL:0000946!8.64e-13!1;CL:0000786!8.64e-13!1;CL:0000980!8.64e-13!1;CL:0000838!8.99e-08!52;CL:0000542!1.28e-07!53;CL:0000051!1.28e-07!53;CL:0000893!2.43e-07!2;CL:0002489!2.43e-07!2;CL:0000809!2.43e-07!2;CL:0000808!2.43e-07!2;CL:0000894!2.43e-07!2;CL:0000806!2.43e-07!2;CL:0000807!2.43e-07!2;CL:0000805!2.43e-07!2;CL:0002425!2.43e-07!2;CL:0002253!2.74e-07!2;CL:0000785!4.98e-07!2;CL:0000955!4.98e-07!2;CL:0000818!4.98e-07!2;CL:0000954!4.98e-07!2;CL:0000816!4.98e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002127;4.66e-66;1!CL:0000911;4.66e-66;1!CL:0000814;4.66e-66;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,4.66e-66,1;CL:0000914,4.66e-66,1;CL:0000911,4.66e-66,1;CL:0000814,4.66e-66,1;CL:0002042,4.66e-66,1;CL:0002039,4.66e-66,1;CL:0002040,4.66e-66,1;CL:0002041,4.66e-66,1;CL:0000893,7.05e-34,2;CL:0002489,7.05e-34,2;CL:0000809,7.05e-34,2;CL:0000808,7.05e-34,2;CL:0000894,7.05e-34,2;CL:0000806,7.05e-34,2;CL:0000807,7.05e-34,2;CL:0000805,7.05e-34,2;CL:0002425,7.05e-34,2 | |||
|ontology_enrichment_development_v019=CL:0002425;7.05e-34;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!9.01e-28!4;UBERON:0005058!9.01e-28!4;UBERON:0009113!9.01e-28!4;UBERON:0003295!9.01e-28!4;UBERON:0005562!9.01e-28!4;UBERON:0004177!1.58e-27!7;UBERON:0000974!1.94e-19!10;UBERON:0003351!9.57e-19!6;UBERON:0003408!1.73e-11!10;UBERON:0001042!1.73e-11!10;UBERON:0009145!1.73e-11!10;UBERON:0006562!1.71e-10!11;UBERON:0009722!1.71e-10!11;UBERON:0007690!1.71e-10!11;UBERON:0008814!7.89e-08!15;UBERON:0005057!1.36e-07!26;UBERON:0000341!3.70e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.61e-131;2!UBERON:0005058;4.61e-131;2!UBERON:0009113;4.61e-131;2!UBERON:0004177;2.19e-53;5!UBERON:0005057;2.19e-53;5!UBERON:0000077;6.25e-11;27!UBERON:0002405;6.25e-11;27!UBERON:0002368;2.43e-07;33!UBERON:0002390;2.44e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.94e-147,4;UBERON:0005058,6.94e-147,4;UBERON:0009113,6.94e-147,4;UBERON:0003295,6.94e-147,4;UBERON:0005562,6.94e-147,4;UBERON:0003351,1.83e-98,6;UBERON:0004177,1.28e-84,7;UBERON:0005057,1.28e-84,7;UBERON:0000974,1.10e-59,10;UBERON:0003408,1.10e-59,10;UBERON:0001042,1.10e-59,10;UBERON:0009145,1.10e-59,10;UBERON:0006562,2.16e-54,11;UBERON:0009722,2.16e-54,11;UBERON:0007690,2.16e-54,11;UBERON:0008814,8.86e-34,18;UBERON:0001557,4.52e-32,19;UBERON:0004807,3.57e-22,28;UBERON:0000077,1.88e-21,29;UBERON:0002368,5.55e-18,35;UBERON:0000949,3.03e-14,45;UBERON:0000072,1.10e-13,47;UBERON:0003929,4.68e-12,54;UBERON:0000065,4.68e-12,54;UBERON:0002530,3.99e-11,59;UBERON:0000153,1.22e-10,62;UBERON:0007811,1.22e-10,62;UBERON:0001004,4.40e-09,74;UBERON:0005911,2.70e-08,82;UBERON:0001041,7.10e-08,87;UBERON:0002405,2.32e-07,93;UBERON:0002390,4.88e-07,98;UBERON:0003061,4.88e-07,98 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.25046917581229,0.788123040807709,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865554558968364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,18.2786614835897,8.06971285846153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |||
|short_description=p3@uc001wea.3,p3@uc010ajt.2,p3@uc010aju.1 | |||
}} |
Revision as of 19:07, 11 January 2014
Short description: | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_uc001wea.3_5end, CAGE_peak_3_at_uc010ajt.2_5end, CAGE_peak_3_at_uc010aju.1_5end |
Coexpression cluster: | C28_thymus_acute_vein_Hodgkin_chronic_throat_Dendritic |
Association with transcript: | -57bp_to_uc001wea.3, uc010ajt.2, uc010aju.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 4.66e-66 | 1 |
immature NK T cell | 4.66e-66 | 1 |
effector T cell | 4.66e-66 | 1 |
mature NK T cell | 4.66e-66 | 1 |
immature NK T cell stage IV | 4.66e-66 | 1 |
immature NK T cell stage I | 4.66e-66 | 1 |
immature NK T cell stage II | 4.66e-66 | 1 |
immature NK T cell stage III | 4.66e-66 | 1 |
thymocyte | 7.05e-34 | 2 |
double negative thymocyte | 7.05e-34 | 2 |
double-positive, alpha-beta thymocyte | 7.05e-34 | 2 |
DN4 thymocyte | 7.05e-34 | 2 |
DN1 thymic pro-T cell | 7.05e-34 | 2 |
DN2 thymocyte | 7.05e-34 | 2 |
DN3 thymocyte | 7.05e-34 | 2 |
immature single positive thymocyte | 7.05e-34 | 2 |
early T lineage precursor | 7.05e-34 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.94e-147 | 4 |
hemolymphoid system gland | 6.94e-147 | 4 |
thymic region | 6.94e-147 | 4 |
pharyngeal gland | 6.94e-147 | 4 |
thymus primordium | 6.94e-147 | 4 |
pharyngeal epithelium | 1.83e-98 | 6 |
hemopoietic organ | 1.28e-84 | 7 |
immune organ | 1.28e-84 | 7 |
neck | 1.10e-59 | 10 |
gland of gut | 1.10e-59 | 10 |
chordate pharynx | 1.10e-59 | 10 |
pharyngeal region of foregut | 1.10e-59 | 10 |
pharynx | 2.16e-54 | 11 |
entire pharyngeal arch endoderm | 2.16e-54 | 11 |
early pharyngeal endoderm | 2.16e-54 | 11 |
pharyngeal arch system | 8.86e-34 | 18 |
upper respiratory tract | 4.52e-32 | 19 |
respiratory system epithelium | 3.57e-22 | 28 |
mixed endoderm/mesoderm-derived structure | 1.88e-21 | 29 |
endocrine gland | 5.55e-18 | 35 |
endocrine system | 3.03e-14 | 45 |
segment of respiratory tract | 1.10e-13 | 47 |
gut epithelium | 4.68e-12 | 54 |
respiratory tract | 4.68e-12 | 54 |
gland | 3.99e-11 | 59 |
anterior region of body | 1.22e-10 | 62 |
craniocervical region | 1.22e-10 | 62 |
respiratory system | 4.40e-09 | 74 |
endo-epithelium | 2.70e-08 | 82 |
foregut | 7.10e-08 | 87 |
immune system | 2.32e-07 | 93 |
hematopoietic system | 4.88e-07 | 98 |
blood island | 4.88e-07 | 98 |