FFCP PHASE1:Hg19::chr12:71031305..71031308,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5787 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9665 | |||
|TSSclassifier=strong | |||
|UniProt=P23467,Q86VA4 | |||
|association_with_transcript=-85bp_to_ENST00000334414,ENST00000552253,NM_001109754_5end | |||
|coexpression_cluster_id=C328 | |||
|description=CAGE_peak_20_at_PTPRB_5end | |||
|id=chr12:71031305..71031308,- | |||
|ontology_enrichment_celltype=CL:0002139!9.11e-27!24;CL:1000413!5.95e-24!9;CL:0000115!9.90e-24!35;CL:0005020!7.28e-21!6;CL:0002138!7.28e-21!6;CL:0005022!7.28e-21!6;CL:0002544!1.42e-20!6;CL:0002078!9.70e-19!44;CL:0000213!4.77e-18!57;CL:0000215!4.77e-18!57;CL:0000071!3.84e-12!18;CL:0002546!3.84e-12!18;CL:0000222!4.30e-10!119;CL:0002545!6.15e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002138;9.87e-34;6!CL:0002188;3.26e-11;5!CL:0000115;3.45e-11;36!CL:0000138;1.22e-09;6!CL:0002139;2.67e-09;24!CL:1000746;2.18e-08;7!CL:1000612;2.18e-08;7!CL:0000213;3.13e-08;58!CL:0000215;3.13e-08;58!CL:0002078;8.38e-08;45!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,8.35e-34,6;CL:0002138,8.35e-34,6;CL:0005022,8.35e-34,6;CL:0000115,3.02e-13,36;CL:0002188,3.60e-11,5;CL:0002078,8.78e-11,45;CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0002139,2.56e-09,24;CL:0000213,1.46e-08,58;CL:0000215,1.46e-08,58;CL:1000746,2.35e-08,7;CL:1000612,2.35e-08,7;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019=CL:0005022;9.87e-34;6 | |||
|ontology_enrichment_disease=DOID:3371!4.73e-15!1;DOID:4549!4.73e-15!1;DOID:5861!4.73e-15!1;DOID:6496!4.73e-15!1 | |||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0003915!5.95e-24!9;UBERON:0004700!5.95e-24!9;UBERON:0001917!5.95e-24!9;UBERON:0001473!8.14e-16!8;UBERON:0004536!8.14e-16!8;UBERON:0006558!8.14e-16!8;UBERON:0002465!8.91e-13!10;UBERON:0001986!3.84e-12!18;UBERON:0004638!3.84e-12!18;UBERON:0004852!3.84e-12!18;UBERON:0000055!1.21e-11!69;UBERON:0000947!2.11e-10!21;UBERON:0010191!2.11e-10!21;UBERON:0002049!4.52e-10!79;UBERON:0007798!4.52e-10!79;UBERON:0000487!5.57e-10!22;UBERON:0006914!8.25e-09!25;UBERON:0005800!6.15e-08!2;UBERON:0001515!6.15e-08!2;UBERON:0001637!6.89e-08!42;UBERON:0003509!6.89e-08!42;UBERON:0004572!6.89e-08!42;UBERON:0001870!9.19e-08!2;UBERON:0004535!5.31e-07!110;UBERON:0001009!8.57e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.26e-25;8!UBERON:0004536;1.26e-25;8!UBERON:0006558;1.26e-25;8!UBERON:0002465;9.44e-21;10!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0000074;2.18e-08;7!UBERON:0001229;2.18e-08;7!UBERON:0002405;2.22e-08;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.11e-25,8;UBERON:0004536,1.11e-25,8;UBERON:0006558,1.11e-25,8;UBERON:0002465,8.54e-21,10;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0010532,2.35e-08,7;UBERON:0000074,2.35e-08,7;UBERON:0001229,2.35e-08,7;UBERON:0001230,2.35e-08,7;UBERON:0003220,2.35e-08,7;UBERON:0005749,2.35e-08,7;UBERON:0004199,2.35e-08,7;UBERON:0004209,2.35e-08,7;UBERON:0004198,2.35e-08,7;UBERON:0005103,1.80e-07,8;UBERON:0000083,1.80e-07,8;UBERON:0009201,1.80e-07,8;UBERON:0006553,1.80e-07,8;UBERON:0003074,1.80e-07,8;UBERON:0003060,1.80e-07,8;UBERON:0000080,8.85e-07,9;UBERON:0002120,8.85e-07,9;UBERON:0004875,8.85e-07,9;UBERON:0005721,8.85e-07,9;UBERON:0005754,8.85e-07,9;UBERON:0007297,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0,0.550236083880135,0,0,1.42306505074684,1.33888245105868,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.73593992743651,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p20@PTPRB | |||
}} |
Revision as of 14:39, 11 January 2014
Short description: | p20@PTPRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_PTPRB_5end |
Coexpression cluster: | C328_Endothelial_Lymphatic_Renal_Hepatic_chronic_extraskeletal_adipose |
Association with transcript: | -85bp_to_ENST00000334414, ENST00000552253, NM_001109754_5end |
EntrezGene: | PTPRB |
HGNC: | 9665 |
UniProt: | P23467Q86VA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 8.35e-34 | 6 |
endothelial cell of lymphatic vessel | 8.35e-34 | 6 |
vascular lymphangioblast | 8.35e-34 | 6 |
endothelial cell | 3.02e-13 | 36 |
glomerular endothelial cell | 3.60e-11 | 5 |
meso-epithelial cell | 8.78e-11 | 45 |
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
endothelial cell of vascular tree | 2.56e-09 | 24 |
lining cell | 1.46e-08 | 58 |
barrier cell | 1.46e-08 | 58 |
glomerular cell | 2.35e-08 | 7 |
kidney corpuscule cell | 2.35e-08 | 7 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.11e-25 | 8 |
lymph vasculature | 1.11e-25 | 8 |
lymphatic part of lymphoid system | 1.11e-25 | 8 |
lymphoid system | 8.54e-21 | 10 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
primitive nephron | 2.35e-08 | 7 |
renal glomerulus | 2.35e-08 | 7 |
renal corpuscle | 2.35e-08 | 7 |
glomerular capsule | 2.35e-08 | 7 |
metanephric mesenchyme | 2.35e-08 | 7 |
glomerular tuft | 2.35e-08 | 7 |
S-shaped body | 2.35e-08 | 7 |
renal vesicle | 2.35e-08 | 7 |
comma-shaped body | 2.35e-08 | 7 |
mesonephric epithelium | 1.80e-07 | 8 |
mesonephric tubule | 1.80e-07 | 8 |
nephric duct | 1.80e-07 | 8 |
renal duct | 1.80e-07 | 8 |
mesonephric duct | 1.80e-07 | 8 |
pronephric duct | 1.80e-07 | 8 |
mesonephros | 8.85e-07 | 9 |
pronephros | 8.85e-07 | 9 |
nephrogenic cord | 8.85e-07 | 9 |
pronephric mesoderm | 8.85e-07 | 9 |
rostral part of nephrogenic cord | 8.85e-07 | 9 |
presumptive pronephric mesoderm | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |