FFCP PHASE1:Hg19::chr7:134551647..134551658,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=800|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1441|TSSclassifier=S|UniProt=C9JE79|association_with_transcript=55bp_to_ENST00000435928_5end|coexpression_cluster_id=C34|description=CAGE_peak_41_at_CALD1_5end|id=chr7:134551647..134551658,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0003124;1.60e-09;1!UBERON:0003099;4.03e-09;1!UBERON:0003852;4.03e-09;1!UBERON:0008801;7.85e-09;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3371;2.82e-09;1!DOID:4549;2.82e-09;1!DOID:5861;2.82e-09;1!DOID:6496;2.82e-09;1|ontology_enrichment_disease_v019_2=DOID:3371,3.05e-09,1;DOID:4549,3.05e-09,1;DOID:5861,3.05e-09,1;DOID:6496,3.05e-09,1|ontology_enrichment_uberon=UBERON:0007023!1.44e-29!115;UBERON:0001049!1.57e-14!57;UBERON:0005068!1.57e-14!57;UBERON:0006241!1.57e-14!57;UBERON:0007135!1.57e-14!57;UBERON:0002346!1.68e-14!90;UBERON:0000153!4.69e-14!129;UBERON:0007811!4.69e-14!129;UBERON:0002616!6.96e-14!59;UBERON:0002020!1.33e-13!34;UBERON:0003528!1.33e-13!34;UBERON:0000033!4.27e-13!123;UBERON:0000481!8.55e-13!347;UBERON:0001950!1.63e-12!20;UBERON:0002791!1.66e-12!33;UBERON:0002619!1.72e-12!22;UBERON:0002780!3.34e-12!41;UBERON:0001890!3.34e-12!41;UBERON:0006240!3.34e-12!41;UBERON:0001017!4.00e-12!82;UBERON:0001893!5.66e-12!34;UBERON:0005743!6.12e-12!86;UBERON:0003075!6.83e-12!86;UBERON:0007284!6.83e-12!86;UBERON:0000956!7.76e-12!25;UBERON:0000203!7.76e-12!25;UBERON:0003080!9.31e-12!42;UBERON:0000955!2.32e-11!69;UBERON:0006238!2.32e-11!69;UBERON:0001869!1.28e-10!32;UBERON:0003056!3.05e-10!61;UBERON:0000477!7.17e-10!286;UBERON:0000073!7.33e-10!94;UBERON:0001016!7.33e-10!94;UBERON:0000924!5.05e-09!173;UBERON:0006601!5.05e-09!173;UBERON:0000922!1.79e-08!612;UBERON:0000475!2.00e-08!365;UBERON:0001007!4.20e-08!155;UBERON:0001555!4.20e-08!155;UBERON:0007026!4.20e-08!155;UBERON:0004111!7.61e-08!241;UBERON:0004121!2.26e-07!169;UBERON:0004921!2.99e-07!129;UBERON:0004185!2.99e-07!129;UBERON:0000062!3.29e-07!511;UBERON:0000468!4.72e-07!659;UBERON:0004119!4.86e-07!169;UBERON:0000925!4.86e-07!169;UBERON:0006595!4.86e-07!169;UBERON:0001872!5.88e-07!5|ontology_enrichment_uberon_v019=UBERON:0004089;3.11e-16;2!UBERON:0005409;1.59e-11;22!UBERON:0000160;2.12e-10;17!UBERON:0000922;2.26e-09;49!UBERON:0004921;2.69e-09;33!UBERON:0002171;4.03e-09;1!UBERON:0005705;4.03e-09;1!UBERON:0008193;4.03e-09;1!UBERON:0010912;4.03e-09;1!UBERON:0006518;4.03e-09;1!UBERON:0008949;4.03e-09;1!UBERON:0002514;4.03e-09;1!UBERON:0003457;4.03e-09;1!UBERON:0008907;4.03e-09;1!UBERON:0008001;4.03e-09;1!UBERON:0007213;4.03e-09;1!UBERON:0009891;4.03e-09;1!UBERON:0007914;4.03e-09;1!UBERON:0007375;4.03e-09;1!UBERON:0003323;4.03e-09;1!UBERON:0010258;4.03e-09;1!UBERON:0000101;4.03e-09;1!UBERON:0005253;4.03e-09;1!UBERON:0007842;4.03e-09;1!UBERON:0002167;4.03e-09;1!UBERON:0002397;4.03e-09;1!UBERON:0003113;4.03e-09;1!UBERON:0003277;4.03e-09;1!UBERON:0001709;4.03e-09;1!UBERON:0002244;4.03e-09;1!UBERON:0005620;4.03e-09;1!UBERON:0010364;4.03e-09;1!UBERON:0004288;4.03e-09;1!UBERON:0001831;7.85e-09;1!UBERON:0001567;7.85e-09;1!UBERON:0002108;4.16e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0004089,3.77e-16,2;UBERON:0000160,1.70e-10,17;UBERON:0005409,3.18e-10,25;UBERON:0005705,3.58e-09,1;UBERON:0008193,3.58e-09,1;UBERON:0010912,3.58e-09,1;UBERON:0002514,3.58e-09,1;UBERON:0003457,3.58e-09,1;UBERON:0008907,3.58e-09,1;UBERON:0008001,3.58e-09,1;UBERON:0007213,3.58e-09,1;UBERON:0009891,3.58e-09,1;UBERON:0007914,3.58e-09,1;UBERON:0009292,3.58e-09,1;UBERON:0003099,3.58e-09,1;UBERON:0007375,3.58e-09,1;UBERON:0003323,3.58e-09,1;UBERON:0010258,3.58e-09,1;UBERON:0007842,3.58e-09,1;UBERON:0009494,3.58e-09,1;UBERON:0010042,3.58e-09,1;UBERON:0010045,3.58e-09,1;UBERON:0010259,3.58e-09,1;UBERON:0010359,3.58e-09,1;UBERON:0009526,3.58e-09,1;UBERON:0002397,3.58e-09,1;UBERON:0003113,3.58e-09,1;UBERON:0003277,3.58e-09,1;UBERON:0001709,3.58e-09,1;UBERON:0004066,3.58e-09,1;UBERON:0002244,3.58e-09,1;UBERON:0005620,3.58e-09,1;UBERON:0004362,3.58e-09,1;UBERON:0010364,3.58e-09,1;UBERON:0010046,3.58e-09,1;UBERON:0005868,3.58e-09,1;UBERON:0007238,3.58e-09,1;UBERON:0004288,3.58e-09,1;UBERON:0004068,3.58e-09,1;UBERON:0010334,3.58e-09,1;UBERON:0003852,3.58e-09,1;UBERON:0010253,3.58e-09,1;UBERON:0002171,4.19e-09,1;UBERON:0006518,4.19e-09,1;UBERON:0008949,4.19e-09,1;UBERON:0000101,4.19e-09,1;UBERON:0002167,4.19e-09,1;UBERON:0001831,1.07e-08,1;UBERON:0001567,1.07e-08,1;UBERON:0008801,1.07e-08,1;UBERON:0004921,1.41e-08,118;UBERON:0004119,5.05e-08,160;UBERON:0000925,5.05e-08,160;UBERON:0006595,5.05e-08,160;UBERON:0001007,9.02e-08,145;UBERON:0001555,9.02e-08,145;UBERON:0007026,9.02e-08,145;UBERON:0011216,1.37e-07,223;UBERON:0002108,3.92e-07,4;UBERON:0000059,9.56e-07,11|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=800 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1441 | |||
|TSSclassifier=S | |||
|UniProt=C9JE79 | |||
|association_with_transcript=55bp_to_ENST00000435928_5end | |||
|coexpression_cluster_id=C34 | |||
|description=CAGE_peak_41_at_CALD1_5end | |||
|id=chr7:134551647..134551658,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.60e-09;1!UBERON:0003099;4.03e-09;1!UBERON:0003852;4.03e-09;1!UBERON:0008801;7.85e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.82e-09;1!DOID:4549;2.82e-09;1!DOID:5861;2.82e-09;1!DOID:6496;2.82e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,3.05e-09,1;DOID:4549,3.05e-09,1;DOID:5861,3.05e-09,1;DOID:6496,3.05e-09,1 | |||
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|short_description=p41@CALD1 | |||
}} |
Revision as of 23:21, 13 September 2013
Short description: | p41@CALD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_41_at_CALD1_5end |
Coexpression cluster: | C34_placenta_chorionic_choriocarcinoma_mesothelioma_Wilms_Smooth_bile |
Association with transcript: | 55bp_to_ENST00000435928_5end |
EntrezGene: | CALD1 |
HGNC: | 1441 |
UniProt: | C9JE79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 3.05e-09 | 1 |
extraosseous chondrosarcoma | 3.05e-09 | 1 |
myxoid chondrosarcoma | 3.05e-09 | 1 |
extraskeletal myxoid chondrosarcoma | 3.05e-09 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.