FFCP PHASE1:Hg19::chr17:39911596..39911611,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1433|description=CAGE_peak_at_chr17:39911596..39911611,-|id=chr17:39911596..39911611,-|ontology_enrichment_celltype=CL:0000066!9.06e-39!254;CL:0002076!6.43e-12!43;CL:0000223!3.12e-11!59;CL:0002321!2.12e-08!248;CL:0000220!3.60e-08!246;CL:0000076!9.94e-08!62|ontology_enrichment_celltype_v019=CL:0002681;1.48e-09;12!CL:0002584;1.48e-09;12!CL:0002188;3.78e-09;5!CL:1000497;3.98e-09;17!CL:0002518;3.98e-09;17!CL:1000449;7.07e-09;15!CL:1000746;1.32e-08;7!CL:1000612;1.32e-08;7!CL:0000115;1.55e-08;36!CL:0002076;1.89e-08;42!CL:0000622;2.57e-08;5!CL:0000244;1.57e-07;4!CL:0000731;1.57e-07;4!CL:0002078;5.30e-07;45!CL:0000154;7.73e-07;6|ontology_enrichment_celltype_v019_2=CL:0000066,5.18e-36,253;CL:0002076,1.02e-10,42;CL:0000115,2.62e-10,36;CL:0002681,2.29e-09,12;CL:0002584,2.29e-09,12;CL:0002078,3.20e-09,45;CL:0000223,5.91e-09,58;CL:1000497,6.35e-09,17;CL:0002518,6.35e-09,17;CL:0002188,7.14e-09,5;CL:1000449,1.24e-08,15;CL:1000746,1.89e-08,7;CL:1000612,1.89e-08,7;CL:0000622,3.48e-08,5;CL:0002321,7.42e-08,250;CL:0000244,1.48e-07,4;CL:0000731,1.48e-07,4;CL:0000154,9.88e-07,6|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!3.80e-13!106;DOID:0050687!3.88e-09!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!6.51e-12!169;UBERON:0000925!6.51e-12!169;UBERON:0006595!6.51e-12!169;UBERON:0006554!1.28e-09!44;UBERON:0001008!4.29e-09!45;UBERON:0000477!1.08e-08!286;UBERON:0001007!3.22e-08!155;UBERON:0001555!3.22e-08!155;UBERON:0007026!3.22e-08!155;UBERON:0001737!3.41e-08!9;UBERON:0000065!5.58e-08!53;UBERON:0004921!1.39e-07!129;UBERON:0004185!1.39e-07!129;UBERON:0001004!1.41e-07!72;UBERON:0000468!1.81e-07!659;UBERON:0000064!3.43e-07!219;UBERON:0005911!6.95e-07!82|ontology_enrichment_uberon_v019=UBERON:0001737;2.11e-16;9!UBERON:0001557;2.11e-16;9!UBERON:0000353;6.51e-11;15!UBERON:0006554;6.62e-10;30!UBERON:0001008;6.62e-10;30!UBERON:0001225;1.48e-09;12!UBERON:0008987;1.48e-09;12!UBERON:0006555;7.07e-09;15!UBERON:0004819;7.07e-09;15!UBERON:0001285;7.07e-09;15!UBERON:0007684;7.07e-09;15!UBERON:0000074;1.32e-08;7!UBERON:0001229;1.32e-08;7!UBERON:0001851;2.98e-07;15!UBERON:0000065;4.58e-07;44!UBERON:0002113;7.36e-07;24!UBERON:0011143;7.36e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.04e-16,9;UBERON:0006554,5.42e-11,47;UBERON:0000353,1.03e-10,15;UBERON:0001008,1.23e-10,48;UBERON:0001557,6.12e-10,19;UBERON:0004119,8.86e-10,160;UBERON:0000925,8.86e-10,160;UBERON:0006595,8.86e-10,160;UBERON:0001225,2.29e-09,12;UBERON:0008987,2.29e-09,12;UBERON:0004211,1.24e-08,15;UBERON:0009773,1.24e-08,15;UBERON:0001231,1.24e-08,15;UBERON:0001285,1.24e-08,15;UBERON:0007684,1.24e-08,15;UBERON:0004208,1.24e-08,15;UBERON:0010532,1.89e-08,7;UBERON:0000074,1.89e-08,7;UBERON:0001229,1.89e-08,7;UBERON:0001230,1.89e-08,7;UBERON:0003220,1.89e-08,7;UBERON:0005749,1.89e-08,7;UBERON:0004199,1.89e-08,7;UBERON:0004209,1.89e-08,7;UBERON:0004198,1.89e-08,7;UBERON:0006555,5.91e-08,16;UBERON:0004819,5.91e-08,16;UBERON:0005103,2.84e-07,8;UBERON:0000083,2.84e-07,8;UBERON:0009201,2.84e-07,8;UBERON:0006553,2.84e-07,8;UBERON:0003074,2.84e-07,8;UBERON:0003060,2.84e-07,8;UBERON:0001851,4.14e-07,15;UBERON:0001004,7.19e-07,74|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.982935746006035,14.653824527421,0.655324116390517,2.11013582582763,0.618831764800233,0.994192127183747,0.672325146451775,0,0.730310090387373,1.46379839637152,0.246242116153576,1.02000345622126,0,0,0.273748850145768,0,0.764134057479513,0.656804715599566,0.472264687882075,0,0,0,0.919421224478927,2.10844143144775,2.9580320813343,0,0,0.293600439334847,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,1.5644487552606,0.434377689410233,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0.569212969109448,0,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0.567208902984407,0.665188192387692,1.49319135678314,0.589405839739707,2.5500670180478,8.15725774125745,0,0,0,0,0,0,0,0,0.694281003215189,0,2.93649605346934,2.20094433552054,0,0.775250277507987,0.71153252537342,1.00416183829401,2.01414658554573,2.28081631715554,5.36936526605973,0.367663080345869,5.67099363517232,0.803697554556718,0.898117490504679,0,0,0,0.549605231791222,0,0,0.436094052142534,0,0.12663051166458,0.397227542439656,0.286836620748814,0.354668382198357,2.24271040056923,0,1.2333377420858,0,0.538842688278752,0.490385709340376,0.605429710579726,0,0.234321431833797,0,0,0,0,0,0,0,0.491337269247072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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1433 | |||
|description=CAGE_peak_at_chr17:39911596..39911611,- | |||
|id=chr17:39911596..39911611,- | |||
|ontology_enrichment_celltype=CL:0000066!9.06e-39!254;CL:0002076!6.43e-12!43;CL:0000223!3.12e-11!59;CL:0002321!2.12e-08!248;CL:0000220!3.60e-08!246;CL:0000076!9.94e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002681;1.48e-09;12!CL:0002584;1.48e-09;12!CL:0002188;3.78e-09;5!CL:1000497;3.98e-09;17!CL:0002518;3.98e-09;17!CL:1000449;7.07e-09;15!CL:1000746;1.32e-08;7!CL:1000612;1.32e-08;7!CL:0000115;1.55e-08;36!CL:0002076;1.89e-08;42!CL:0000622;2.57e-08;5!CL:0000244;1.57e-07;4!CL:0000731;1.57e-07;4!CL:0002078;5.30e-07;45!CL:0000154;7.73e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.18e-36,253;CL:0002076,1.02e-10,42;CL:0000115,2.62e-10,36;CL:0002681,2.29e-09,12;CL:0002584,2.29e-09,12;CL:0002078,3.20e-09,45;CL:0000223,5.91e-09,58;CL:1000497,6.35e-09,17;CL:0002518,6.35e-09,17;CL:0002188,7.14e-09,5;CL:1000449,1.24e-08,15;CL:1000746,1.89e-08,7;CL:1000612,1.89e-08,7;CL:0000622,3.48e-08,5;CL:0002321,7.42e-08,250;CL:0000244,1.48e-07,4;CL:0000731,1.48e-07,4;CL:0000154,9.88e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.80e-13!106;DOID:0050687!3.88e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!6.51e-12!169;UBERON:0000925!6.51e-12!169;UBERON:0006595!6.51e-12!169;UBERON:0006554!1.28e-09!44;UBERON:0001008!4.29e-09!45;UBERON:0000477!1.08e-08!286;UBERON:0001007!3.22e-08!155;UBERON:0001555!3.22e-08!155;UBERON:0007026!3.22e-08!155;UBERON:0001737!3.41e-08!9;UBERON:0000065!5.58e-08!53;UBERON:0004921!1.39e-07!129;UBERON:0004185!1.39e-07!129;UBERON:0001004!1.41e-07!72;UBERON:0000468!1.81e-07!659;UBERON:0000064!3.43e-07!219;UBERON:0005911!6.95e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.11e-16;9!UBERON:0001557;2.11e-16;9!UBERON:0000353;6.51e-11;15!UBERON:0006554;6.62e-10;30!UBERON:0001008;6.62e-10;30!UBERON:0001225;1.48e-09;12!UBERON:0008987;1.48e-09;12!UBERON:0006555;7.07e-09;15!UBERON:0004819;7.07e-09;15!UBERON:0001285;7.07e-09;15!UBERON:0007684;7.07e-09;15!UBERON:0000074;1.32e-08;7!UBERON:0001229;1.32e-08;7!UBERON:0001851;2.98e-07;15!UBERON:0000065;4.58e-07;44!UBERON:0002113;7.36e-07;24!UBERON:0011143;7.36e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.04e-16,9;UBERON:0006554,5.42e-11,47;UBERON:0000353,1.03e-10,15;UBERON:0001008,1.23e-10,48;UBERON:0001557,6.12e-10,19;UBERON:0004119,8.86e-10,160;UBERON:0000925,8.86e-10,160;UBERON:0006595,8.86e-10,160;UBERON:0001225,2.29e-09,12;UBERON:0008987,2.29e-09,12;UBERON:0004211,1.24e-08,15;UBERON:0009773,1.24e-08,15;UBERON:0001231,1.24e-08,15;UBERON:0001285,1.24e-08,15;UBERON:0007684,1.24e-08,15;UBERON:0004208,1.24e-08,15;UBERON:0010532,1.89e-08,7;UBERON:0000074,1.89e-08,7;UBERON:0001229,1.89e-08,7;UBERON:0001230,1.89e-08,7;UBERON:0003220,1.89e-08,7;UBERON:0005749,1.89e-08,7;UBERON:0004199,1.89e-08,7;UBERON:0004209,1.89e-08,7;UBERON:0004198,1.89e-08,7;UBERON:0006555,5.91e-08,16;UBERON:0004819,5.91e-08,16;UBERON:0005103,2.84e-07,8;UBERON:0000083,2.84e-07,8;UBERON:0009201,2.84e-07,8;UBERON:0006553,2.84e-07,8;UBERON:0003074,2.84e-07,8;UBERON:0003060,2.84e-07,8;UBERON:0001851,4.14e-07,15;UBERON:0001004,7.19e-07,74 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.982935746006035,14.653824527421,0.655324116390517,2.11013582582763,0.618831764800233,0.994192127183747,0.672325146451775,0,0.730310090387373,1.46379839637152,0.246242116153576,1.02000345622126,0,0,0.273748850145768,0,0.764134057479513,0.656804715599566,0.472264687882075,0,0,0,0.919421224478927,2.10844143144775,2.9580320813343,0,0,0.293600439334847,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0.485168122375632,0.232429036905685,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,1.5644487552606,0.434377689410233,1.81619850790011,0,0.316462387440884,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0.569212969109448,0,0.382273228125229,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0.567208902984407,0.665188192387692,1.49319135678314,0.589405839739707,2.5500670180478,8.15725774125745,0,0,0,0,0,0,0,0,0.694281003215189,0,2.93649605346934,2.20094433552054,0,0.775250277507987,0.71153252537342,1.00416183829401,2.01414658554573,2.28081631715554,5.36936526605973,0.367663080345869,5.67099363517232,0.803697554556718,0.898117490504679,0,0,0,0.549605231791222,0,0,0.436094052142534,0,0.12663051166458,0.397227542439656,0.286836620748814,0.354668382198357,2.24271040056923,0,1.2333377420858,0,0.538842688278752,0.490385709340376,0.605429710579726,0,0.234321431833797,0,0,0,0,0,0,0,0.491337269247072,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0.10075209822764,0,0.386521706326594,1.36373060295417,0.286804595389004,0.365921118388786,0.397589304964456,0.69716365721711,0.621966330092223,1.7662459561294,0.36497735907583,0,0,0,0.464367928031979,0,5.44211280183282,3.54027849164014,5.3022426574366,7.279402200338,5.01122721412534,4.50814176311084,5.66291494272691,6.86775127938711,4.61696588335668,2.21446636387394,1.40241773803446,0,0,2.53510069643662,0,0,0,1.35287282397425,0.343135620597051,7.13376855156066,0,5.42856451022807,3.51836091602412,0,0,2.88662684050547,0.34779121492523,0.469634776943287,1.58803092537181,1.85194205030644,2.28304982681518,4.74122638775565,2.57545848628462,0,0,0,0.93733833986777,1.51183915378974,0.992425680696705,1.25381931783988,2.3250715081117,1.53353071666084,0,0.264145302039678,0.207328115540772,0.288239906833923,0.6312121671319,0,0,0,1.71072446022705,0,0,0,0.336393253036082,0,0.2933531432838,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0.871533458600294,1.29964888536674,0,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,1.27587750330633,0,0,0,0.613457458595699,0.500170521059677,0.271265023699736,0,0.178428988797162,0,0,0,0,0,0,0,0,0.587403472388222,1.02943027143257,0,0,0.106727557803444,0.606255142892519,3.32870879020994,4.23346410661552,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,2.29632954224082,7.41873940122154,7.73480307061529,0.34444334449382,1.27463817604702,0.917870904715969,0.451199612907412,1.30926073077505,0.784349769176855,0,1.16106791782163,3.4120015221269,2.04112446331819,1.0795795805107,10.7959076883203,0,1.50506932156456,1.01950509218015,1.66215201785745,0.895499018888713,0,0,0,0,0,0.515205058238611,0.0915694648183434,0,1.14853107599234,8.45078319847478,0,0,0,0,0,0,0,0,0,2.97512847649761,1.15314040419064,0.382838137483752,2.2254711788221,0,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0.316379424718726,0,0.255897791311334,0,0,0.78494864019923,0,0.823611089208164,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,1.05650146756755,0.136499911407986,0.848432591722276,0,0,1.32687795048244,2.63070531152258,0,0,0.202910376962704,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,1.39973888097993,0.48111056362756,0,4.3556393944529,0.470719003883896,2.58303223602738,8.42357378338128,6.20802214951346,1.37834040124176,0,0,0,0,0,0,0,0.79312517629427,0.106824071127473,0,0.735120647943095,0,0.28853842595289,0,0,0.59873811429845,0.191505370132367,1.05836791361941,0.324621940274555,0.280797178113459,0.228234679033192,0.156679895773023,0,0.50787533340481,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0.18714054040822,0.293016358543788,0.121360521749513,0,0,1.43246690842614,0,4.30024982938925,0,0,0,0,0.63337622438398,0.19924798825107,0,0,0.102268682502155,0,0,0.359473404589307,0.895105873378046,0,0.295930216910801,0,0,0,0,0,1.30213880542617,0.262379999988587,0,1.70690172428249,0.254253650292766,1.18193840883968,0,0.291604613383254,0,0,0.120596438625408,0,0.442317039724898,0.295547618953547,0,0.10893846351899,1.53366118706464,0.769502585037971,0,0.922255617552241,1.25660702173681,2.06430006651815,0.638002319463839,0.457987967009312,3.19820865611181,0,0.470940769185074,0.332423363800313,0.676786981851542,1.56850027454192,0.503464760927528,0,0,0.632994193584081,0.4896984244774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| |||
|short_description=p@chr17:39911596..39911611,- | |||
}} |
Revision as of 13:38, 11 September 2013
Short description: | p@chr17:39911596..39911611, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:39911596..39911611, - |
Coexpression cluster: | C1433_Alveolar_Sebocyte_Keratinocyte_Corneal_Renal_Urothelial_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.18e-36 | 253 |
endo-epithelial cell | 1.02e-10 | 42 |
endothelial cell | 2.62e-10 | 36 |
kidney cortical cell | 2.29e-09 | 12 |
renal cortical epithelial cell | 2.29e-09 | 12 |
meso-epithelial cell | 3.20e-09 | 45 |
endodermal cell | 5.91e-09 | 58 |
kidney cell | 6.35e-09 | 17 |
kidney epithelial cell | 6.35e-09 | 17 |
glomerular endothelial cell | 7.14e-09 | 5 |
epithelial cell of nephron | 1.24e-08 | 15 |
glomerular cell | 1.89e-08 | 7 |
kidney corpuscule cell | 1.89e-08 | 7 |
acinar cell | 3.48e-08 | 5 |
embryonic cell | 7.42e-08 | 250 |
transitional epithelial cell | 1.48e-07 | 4 |
urothelial cell | 1.48e-07 | 4 |
protein secreting cell | 9.88e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.04e-16 | 9 |
urinary system structure | 5.42e-11 | 47 |
parenchyma | 1.03e-10 | 15 |
renal system | 1.23e-10 | 48 |
upper respiratory tract | 6.12e-10 | 19 |
endoderm-derived structure | 8.86e-10 | 160 |
endoderm | 8.86e-10 | 160 |
presumptive endoderm | 8.86e-10 | 160 |
cortex of kidney | 2.29e-09 | 12 |
renal parenchyma | 2.29e-09 | 12 |
nephron epithelium | 1.24e-08 | 15 |
renal tubule | 1.24e-08 | 15 |
nephron tubule | 1.24e-08 | 15 |
nephron | 1.24e-08 | 15 |
uriniferous tubule | 1.24e-08 | 15 |
nephrogenic mesenchyme | 1.24e-08 | 15 |
primitive nephron | 1.89e-08 | 7 |
renal glomerulus | 1.89e-08 | 7 |
renal corpuscle | 1.89e-08 | 7 |
glomerular capsule | 1.89e-08 | 7 |
metanephric mesenchyme | 1.89e-08 | 7 |
glomerular tuft | 1.89e-08 | 7 |
S-shaped body | 1.89e-08 | 7 |
renal vesicle | 1.89e-08 | 7 |
comma-shaped body | 1.89e-08 | 7 |
excretory tube | 5.91e-08 | 16 |
kidney epithelium | 5.91e-08 | 16 |
mesonephric epithelium | 2.84e-07 | 8 |
mesonephric tubule | 2.84e-07 | 8 |
nephric duct | 2.84e-07 | 8 |
renal duct | 2.84e-07 | 8 |
mesonephric duct | 2.84e-07 | 8 |
pronephric duct | 2.84e-07 | 8 |
cortex | 4.14e-07 | 15 |
respiratory system | 7.19e-07 | 74 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.