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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008043
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0011443
|is_a=EFO:0002091;;FF:0011443
|is_obsolete=
|is_obsolete=
|library_ids=CNhs13466
|name=CD14+ monocytes - treated with IFN + N-hexane, donor1
|name=CD14+ monocytes - treated with IFN + N-hexane, donor1
|namespace=
|namespace=
Line 85: Line 87:
|top_motifs=STAT2,4,6:4.70537868478;STAT1,3:4.19777384016;IRF7:4.09485794335;IRF1,2:3.78873340626;STAT5{A,B}:3.17986788248;NFE2L2:2.81632113569;CEBPA,B_DDIT3:2.61671126687;SPI1:2.51429316509;EP300:2.45712261662;SPIB:2.4344380225;NANOG{mouse}:2.4275918856;SREBF1,2:2.22689717353;NFE2:2.08185698893;PAX2:1.99896406771;TLX2:1.99083012476;FOXN1:1.93154158343;DMAP1_NCOR{1,2}_SMARC:1.90478852849;ETS1,2:1.90381330735;FOSL2:1.82721868797;NR1H4:1.73415267894;NFIL3:1.70295662128;PDX1:1.61016689175;BACH2:1.60218812631;NR6A1:1.52158559062;HLF:1.4874045667;FOS_FOS{B,L1}_JUN{B,D}:1.48134809766;FOXP3:1.41473686674;ELF1,2,4:1.37862088814;NFE2L1:1.36759450907;RXRA_VDR{dimer}:1.26606474117;RUNX1..3:1.20463389224;ATF5_CREB3:1.1934738105;ATF6:1.11993997538;TFCP2:1.0865884932;NFKB1_REL_RELA:1.07091507462;TGIF1:1.00653876645;ESRRA:0.973942640884;SPZ1:0.916869485405;FOXD3:0.851763830691;CDX1,2,4:0.799616746575;HBP1_HMGB_SSRP1_UBTF:0.792167872327;ATF4:0.78533015004;CREB1:0.760939076168;HMX1:0.734820806904;NKX3-2:0.660311070662;ALX4:0.651298177497;MAFB:0.576201876006;FOX{D1,D2}:0.452751769441;BPTF:0.451037930638;GLI1..3:0.444311292931;HIF1A:0.441419874746;ATF2:0.423729595058;HMGA1,2:0.379413274207;PAX3,7:0.366419361835;SMAD1..7,9:0.316430169265;PITX1..3:0.307559809526;FOX{F1,F2,J1}:0.22540526089;HSF1,2:0.224913154877;ESR1:0.198069947352;ZBTB16:0.19143569643;GATA4:0.189040181499;JUN:0.169319342044;MYB:0.153029437554;IKZF2:0.122868720316;PRDM1:0.0682335548746;NKX2-2,8:0.0466795207044;AHR_ARNT_ARNT2:0.0399329991483;FOXO1,3,4:0.0102481316093;TFAP4:-0.00927754575234;EN1,2:-0.0258440272738;XBP1:-0.0357990223858;RFX2..5_RFXANK_RFXAP:-0.079496591919;SRF:-0.0931907627491;MYFfamily:-0.135366708958;RXR{A,B,G}:-0.137808737499;NFIX:-0.163640959628;DBP:-0.200071206457;HOX{A6,A7,B6,B7}:-0.218049004918;NFATC1..3:-0.27205286285;PAX1,9:-0.296792897761;HNF4A_NR2F1,2:-0.298794090223;MZF1:-0.306755860215;NANOG:-0.330577302004;ZNF148:-0.381197626214;HES1:-0.392048672958;FOXM1:-0.438679382977;PAX4:-0.445239520235;TAL1_TCF{3,4,12}:-0.445751603225;PATZ1:-0.453484371917;POU6F1:-0.45999065526;TBP:-0.474444212315;VSX1,2:-0.488153116448;ZNF238:-0.525310840083;REST:-0.540311302631;FOXP1:-0.56028243324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.568092050937;GATA6:-0.56861029246;POU1F1:-0.577777946343;IKZF1:-0.582627995881;NHLH1,2:-0.584711373258;CUX2:-0.59232384782;TOPORS:-0.594050974539;CRX:-0.601290196973;PAX8:-0.605580766954;MED-1{core}:-0.609005787913;ALX1:-0.61228488441;NKX6-1,2:-0.61932717213;HNF1A:-0.625752733134;MYOD1:-0.633565337413;OCT4_SOX2{dimer}:-0.64312698855;POU2F1..3:-0.657532231334;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.678864346092;PRRX1,2:-0.700957921399;TFAP2{A,C}:-0.705400978065;GCM1,2:-0.720302198655;POU5F1:-0.724418993284;ZBTB6:-0.749250312702;FOXA2:-0.777020794745;FOXL1:-0.801375097656;PPARG:-0.81776638652;EGR1..3:-0.829123415155;EBF1:-0.838728571941;MTF1:-0.839077997137;HAND1,2:-0.851108389561;RREB1:-0.858327275288;HOXA9_MEIS1:-0.873822929955;SOX2:-0.928036477377;MEF2{A,B,C,D}:-0.95228085241;NR3C1:-0.963677548861;EVI1:-0.96539257079;KLF4:-0.998306959656;UFEwm:-1.00209042298;MTE{core}:-1.01774206735;SOX5:-1.01966972185;HOX{A5,B5}:-1.02501963438;TFAP2B:-1.03349264386;ZEB1:-1.03858488105;ZFP161:-1.06484240051;PAX6:-1.08268839482;LMO2:-1.10585933826;MAZ:-1.10604300365;NKX3-1:-1.11755502671;AIRE:-1.11872968741;GTF2I:-1.16521155758;GZF1:-1.16997494583;ZIC1..3:-1.17070925061;SP1:-1.18849453813;TP53:-1.2041366521;FOXQ1:-1.22151900961;TLX1..3_NFIC{dimer}:-1.23368750399;AR:-1.24237562412;SNAI1..3:-1.24327829034;GTF2A1,2:-1.28202079561;XCPE1{core}:-1.29271983034;ADNP_IRX_SIX_ZHX:-1.35097000085;RFX1:-1.35524699211;TEF:-1.38490265055;ZNF423:-1.41836564524;E2F1..5:-1.43464291791;RORA:-1.44774781577;POU3F1..4:-1.45671914342;RBPJ:-1.46807525209;TEAD1:-1.47390811823;YY1:-1.49980731983;ELK1,4_GABP{A,B1}:-1.50882582669;TFDP1:-1.54226786445;MYBL2:-1.5683296863;BREu{core}:-1.60195131181;PAX5:-1.61130630502;SOX{8,9,10}:-1.66094790475;HIC1:-1.68125378389;GFI1B:-1.72784093611;NKX2-3_NKX2-5:-1.85140101589;ZNF384:-1.85820400698;NR5A1,2:-1.85943501567;FOX{I1,J2}:-1.89332519421;HOX{A4,D4}:-1.90085006671;ARID5B:-1.9553570314;ONECUT1,2:-1.98231990822;NKX2-1,4:-1.99434837;T:-2.04701019195;CDC5L:-2.11331998422;TBX4,5:-2.15614518872;NFY{A,B,C}:-2.23019308241;SOX17:-2.24651435583;bHLH_family:-2.25212047782;GFI1:-2.28559443891;NRF1:-2.3106089165;LEF1_TCF7_TCF7L1,2:-2.32050845237;ZNF143:-2.63858109724;LHX3,4:-2.69517806006;PBX1:-2.87376277792
|top_motifs=STAT2,4,6:4.70537868478;STAT1,3:4.19777384016;IRF7:4.09485794335;IRF1,2:3.78873340626;STAT5{A,B}:3.17986788248;NFE2L2:2.81632113569;CEBPA,B_DDIT3:2.61671126687;SPI1:2.51429316509;EP300:2.45712261662;SPIB:2.4344380225;NANOG{mouse}:2.4275918856;SREBF1,2:2.22689717353;NFE2:2.08185698893;PAX2:1.99896406771;TLX2:1.99083012476;FOXN1:1.93154158343;DMAP1_NCOR{1,2}_SMARC:1.90478852849;ETS1,2:1.90381330735;FOSL2:1.82721868797;NR1H4:1.73415267894;NFIL3:1.70295662128;PDX1:1.61016689175;BACH2:1.60218812631;NR6A1:1.52158559062;HLF:1.4874045667;FOS_FOS{B,L1}_JUN{B,D}:1.48134809766;FOXP3:1.41473686674;ELF1,2,4:1.37862088814;NFE2L1:1.36759450907;RXRA_VDR{dimer}:1.26606474117;RUNX1..3:1.20463389224;ATF5_CREB3:1.1934738105;ATF6:1.11993997538;TFCP2:1.0865884932;NFKB1_REL_RELA:1.07091507462;TGIF1:1.00653876645;ESRRA:0.973942640884;SPZ1:0.916869485405;FOXD3:0.851763830691;CDX1,2,4:0.799616746575;HBP1_HMGB_SSRP1_UBTF:0.792167872327;ATF4:0.78533015004;CREB1:0.760939076168;HMX1:0.734820806904;NKX3-2:0.660311070662;ALX4:0.651298177497;MAFB:0.576201876006;FOX{D1,D2}:0.452751769441;BPTF:0.451037930638;GLI1..3:0.444311292931;HIF1A:0.441419874746;ATF2:0.423729595058;HMGA1,2:0.379413274207;PAX3,7:0.366419361835;SMAD1..7,9:0.316430169265;PITX1..3:0.307559809526;FOX{F1,F2,J1}:0.22540526089;HSF1,2:0.224913154877;ESR1:0.198069947352;ZBTB16:0.19143569643;GATA4:0.189040181499;JUN:0.169319342044;MYB:0.153029437554;IKZF2:0.122868720316;PRDM1:0.0682335548746;NKX2-2,8:0.0466795207044;AHR_ARNT_ARNT2:0.0399329991483;FOXO1,3,4:0.0102481316093;TFAP4:-0.00927754575234;EN1,2:-0.0258440272738;XBP1:-0.0357990223858;RFX2..5_RFXANK_RFXAP:-0.079496591919;SRF:-0.0931907627491;MYFfamily:-0.135366708958;RXR{A,B,G}:-0.137808737499;NFIX:-0.163640959628;DBP:-0.200071206457;HOX{A6,A7,B6,B7}:-0.218049004918;NFATC1..3:-0.27205286285;PAX1,9:-0.296792897761;HNF4A_NR2F1,2:-0.298794090223;MZF1:-0.306755860215;NANOG:-0.330577302004;ZNF148:-0.381197626214;HES1:-0.392048672958;FOXM1:-0.438679382977;PAX4:-0.445239520235;TAL1_TCF{3,4,12}:-0.445751603225;PATZ1:-0.453484371917;POU6F1:-0.45999065526;TBP:-0.474444212315;VSX1,2:-0.488153116448;ZNF238:-0.525310840083;REST:-0.540311302631;FOXP1:-0.56028243324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.568092050937;GATA6:-0.56861029246;POU1F1:-0.577777946343;IKZF1:-0.582627995881;NHLH1,2:-0.584711373258;CUX2:-0.59232384782;TOPORS:-0.594050974539;CRX:-0.601290196973;PAX8:-0.605580766954;MED-1{core}:-0.609005787913;ALX1:-0.61228488441;NKX6-1,2:-0.61932717213;HNF1A:-0.625752733134;MYOD1:-0.633565337413;OCT4_SOX2{dimer}:-0.64312698855;POU2F1..3:-0.657532231334;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.678864346092;PRRX1,2:-0.700957921399;TFAP2{A,C}:-0.705400978065;GCM1,2:-0.720302198655;POU5F1:-0.724418993284;ZBTB6:-0.749250312702;FOXA2:-0.777020794745;FOXL1:-0.801375097656;PPARG:-0.81776638652;EGR1..3:-0.829123415155;EBF1:-0.838728571941;MTF1:-0.839077997137;HAND1,2:-0.851108389561;RREB1:-0.858327275288;HOXA9_MEIS1:-0.873822929955;SOX2:-0.928036477377;MEF2{A,B,C,D}:-0.95228085241;NR3C1:-0.963677548861;EVI1:-0.96539257079;KLF4:-0.998306959656;UFEwm:-1.00209042298;MTE{core}:-1.01774206735;SOX5:-1.01966972185;HOX{A5,B5}:-1.02501963438;TFAP2B:-1.03349264386;ZEB1:-1.03858488105;ZFP161:-1.06484240051;PAX6:-1.08268839482;LMO2:-1.10585933826;MAZ:-1.10604300365;NKX3-1:-1.11755502671;AIRE:-1.11872968741;GTF2I:-1.16521155758;GZF1:-1.16997494583;ZIC1..3:-1.17070925061;SP1:-1.18849453813;TP53:-1.2041366521;FOXQ1:-1.22151900961;TLX1..3_NFIC{dimer}:-1.23368750399;AR:-1.24237562412;SNAI1..3:-1.24327829034;GTF2A1,2:-1.28202079561;XCPE1{core}:-1.29271983034;ADNP_IRX_SIX_ZHX:-1.35097000085;RFX1:-1.35524699211;TEF:-1.38490265055;ZNF423:-1.41836564524;E2F1..5:-1.43464291791;RORA:-1.44774781577;POU3F1..4:-1.45671914342;RBPJ:-1.46807525209;TEAD1:-1.47390811823;YY1:-1.49980731983;ELK1,4_GABP{A,B1}:-1.50882582669;TFDP1:-1.54226786445;MYBL2:-1.5683296863;BREu{core}:-1.60195131181;PAX5:-1.61130630502;SOX{8,9,10}:-1.66094790475;HIC1:-1.68125378389;GFI1B:-1.72784093611;NKX2-3_NKX2-5:-1.85140101589;ZNF384:-1.85820400698;NR5A1,2:-1.85943501567;FOX{I1,J2}:-1.89332519421;HOX{A4,D4}:-1.90085006671;ARID5B:-1.9553570314;ONECUT1,2:-1.98231990822;NKX2-1,4:-1.99434837;T:-2.04701019195;CDC5L:-2.11331998422;TBX4,5:-2.15614518872;NFY{A,B,C}:-2.23019308241;SOX17:-2.24651435583;bHLH_family:-2.25212047782;GFI1:-2.28559443891;NRF1:-2.3106089165;LEF1_TCF7_TCF7L1,2:-2.32050845237;ZNF143:-2.63858109724;LHX3,4:-2.69517806006;PBX1:-2.87376277792
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008043
|accession_numbers=DRX008150;DRR009022;DRZ000447;DRZ001832;CAGE
|library_id=CNhs13466
}}
}}

Revision as of 21:56, 16 October 2013


Name:CD14+ monocytes - treated with IFN + N-hexane, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-2
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008043
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.124
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0994
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.561
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.5
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.186
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.26
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.774
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0806
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.22
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.124
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.377
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.665
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.22
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.404
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.124
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.299
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.22
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.859
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.22
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.874
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.398
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.561
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.86
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.3
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.124
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.365
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.299
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.124
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.196
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.774
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.584
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.124
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.881
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.423
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0285
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.664
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.423
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.695
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.561
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.22
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.124
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.22
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13466

Jaspar motifP-value
MA0002.26.29055e-8
MA0003.10.306
MA0004.10.646
MA0006.10.862
MA0007.10.597
MA0009.10.621
MA0014.10.917
MA0017.10.0109
MA0018.20.904
MA0019.10.776
MA0024.10.00149
MA0025.10.12
MA0027.10.731
MA0028.10.128
MA0029.10.363
MA0030.10.235
MA0031.10.567
MA0035.20.271
MA0038.10.0142
MA0039.20.934
MA0040.10.144
MA0041.10.87
MA0042.10.884
MA0043.10.015
MA0046.10.207
MA0047.20.631
MA0048.10.997
MA0050.12.72741e-26
MA0051.14.65789e-17
MA0052.10.767
MA0055.10.415
MA0057.10.844
MA0058.10.457
MA0059.10.631
MA0060.11.86972e-12
MA0061.19.6733e-5
MA0062.20.543
MA0065.20.0083
MA0066.10.0735
MA0067.10.00124
MA0068.10.944
MA0069.10.538
MA0070.19.43768e-4
MA0071.10.375
MA0072.10.83
MA0073.10.34
MA0074.10.174
MA0076.10.145
MA0077.10.199
MA0078.10.469
MA0079.20.625
MA0080.24.51743e-15
MA0081.13.13034e-4
MA0083.10.696
MA0084.10.963
MA0087.10.694
MA0088.10.625
MA0090.10.163
MA0091.10.184
MA0092.10.202
MA0093.10.719
MA0099.28.33567e-29
MA0100.10.779
MA0101.10.00214
MA0102.23.99937e-7
MA0103.10.605
MA0104.20.731
MA0105.14.28901e-7
MA0106.10.962
MA0107.14.22157e-4
MA0108.20.00241
MA0111.10.445
MA0112.27.41105e-5
MA0113.10.384
MA0114.10.148
MA0115.10.539
MA0116.13.3652e-4
MA0117.10.308
MA0119.10.339
MA0122.10.805
MA0124.10.983
MA0125.10.511
MA0131.10.368
MA0135.10.594
MA0136.11.10099e-14
MA0137.24.67606e-17
MA0138.20.833
MA0139.10.891
MA0140.10.236
MA0141.10.0712
MA0142.10.533
MA0143.10.581
MA0144.14.92254e-7
MA0145.10.181
MA0146.10.0957
MA0147.10.72
MA0148.10.937
MA0149.10.283
MA0150.12.76296e-13
MA0152.10.697
MA0153.10.00701
MA0154.10.00266
MA0155.10.799
MA0156.18.59996e-9
MA0157.10.627
MA0159.10.0132
MA0160.10.0408
MA0162.10.632
MA0163.16.72317e-7
MA0164.10.718
MA0258.10.00174
MA0259.10.508



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13466

Novel motifP-value
10.108
100.0282
1000.817
1010.795
1020.532
1030.145
1040.625
1050.521
1066.10285e-4
1070.177
1080.793
1090.152
110.1
1100.189
1110.0316
1120.263
1130.652
1140.00777
1150.365
1160.721
1170.0568
1180.215
1190.153
120.471
1200.332
1210.696
1220.582
1230.184
1240.923
1250.37
1260.394
1270.273
1280.0103
1290.384
130.18
1300.199
1310.568
1320.0825
1330.936
1340.606
1350.346
1360.87
1370.0196
1380.167
1390.0561
140.381
1400.253
1410.304
1420.274
1430.0175
1440.781
1450.278
1460.866
1470.361
1480.013
1490.618
150.116
1500.42
1510.307
1520.0816
1530.565
1540.487
1550.481
1560.647
1570.945
1580.172
1590.421
160.236
1600.368
1610.485
1620.428
1630.148
1640.168
1650.0456
1660.767
1670.24
1680.269
1690.00888
170.166
180.145
190.256
20.97
200.433
210.35
220.23
230.0302
240.208
250.347
260.0384
270.706
280.511
290.242
30.0532
300.675
310.754
320.737
330.344
340.464
350.195
360.168
370.0818
380.448
390.738
40.965
400.308
410.0342
420.316
430.0404
440.563
450.724
460.12
470.365
480.357
490.125
50.221
500.878
510.296
520.198
530.45
540.253
550.229
560.645
570.781
580.0909
590.132
60.64
600.0203
610.71
620.0287
630.351
640.411
650.257
660.339
670.555
680.879
690.525
70.267
700.0142
710.0363
720.106
730.125
740.0486
750.0876
760.372
770.322
780.0698
790.0349
80.31
800.156
810.302
820.0512
830.218
840.353
850.0153
860.0741
870.347
880.516
890.207
90.248
900.0543
910.367
920.125
930.609
940.0437
950.329
960.387
970.856
980.0924
990.213



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13466


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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