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MCL coexpression mm9:129: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002370!6.28e-49!23;UBERON:0000974!6.28e-49!23;UBERON:0004807!6.28e-49!23;UBERON:0005058!6.28e-49!23;UBERON:0003351!6.28e-49!23;UBERON:0009113!6.28e-49!23;UBERON:0003295!6.28e-49!23;UBERON:0009722!6.28e-49!23;UBERON:0005562!6.28e-49!23;UBERON:0007690!6.28e-49!23;UBERON:0006562!7.78e-47!24;UBERON:0003408!7.78e-47!24;UBERON:0001557!7.78e-47!24;UBERON:0001042!7.78e-47!24;UBERON:0008814!7.78e-47!24;UBERON:0009145!7.78e-47!24;UBERON:0000072!1.75e-41!27;UBERON:0004177!1.57e-38!29;UBERON:0005057!1.57e-38!29;UBERON:0000077!1.09e-31!35;UBERON:0000063!1.09e-31!35;UBERON:0007811!9.06e-31!36;UBERON:0000065!7.65e-27!41;UBERON:0001004!3.61e-26!42;UBERON:0000153!1.58e-25!43;UBERON:0002390!2.51e-24!45;UBERON:0003061!2.51e-24!45;UBERON:0002193!1.03e-22!48;UBERON:0002405!1.03e-22!48;UBERON:0002368!1.31e-20!60;UBERON:0003929!1.24e-19!55;UBERON:0002530!6.65e-19!65;UBERON:0000949!6.51e-17!72;UBERON:0000490!4.23e-16!66;UBERON:0005911!2.48e-15!69;UBERON:0001041!5.32e-13!80;UBERON:0003081!8.03e-12!87;UBERON:0000064!3.49e-10!99;UBERON:0000926!1.78e-09!120;UBERON:0004120!1.78e-09!120;UBERON:0006603!1.78e-09!120;UBERON:0004921!1.30e-08!114;UBERON:0001007!1.96e-08!116;UBERON:0001555!1.96e-08!116;UBERON:0007026!1.96e-08!116;UBERON:0004119!2.92e-08!118;UBERON:0000925!2.92e-08!118;UBERON:0006595!2.92e-08!118;UBERON:0000475!3.23e-07!150;UBERON:0001048!4.66e-07!134
|ontology_enrichment_uberon=UBERON:0002370!6.28e-49!23;UBERON:0000974!6.28e-49!23;UBERON:0004807!6.28e-49!23;UBERON:0005058!6.28e-49!23;UBERON:0003351!6.28e-49!23;UBERON:0009113!6.28e-49!23;UBERON:0003295!6.28e-49!23;UBERON:0009722!6.28e-49!23;UBERON:0005562!6.28e-49!23;UBERON:0007690!6.28e-49!23;UBERON:0006562!7.78e-47!24;UBERON:0003408!7.78e-47!24;UBERON:0001557!7.78e-47!24;UBERON:0001042!7.78e-47!24;UBERON:0008814!7.78e-47!24;UBERON:0009145!7.78e-47!24;UBERON:0000072!1.75e-41!27;UBERON:0004177!1.57e-38!29;UBERON:0005057!1.57e-38!29;UBERON:0000077!1.09e-31!35;UBERON:0000063!1.09e-31!35;UBERON:0007811!9.06e-31!36;UBERON:0000065!7.65e-27!41;UBERON:0001004!3.61e-26!42;UBERON:0000153!1.58e-25!43;UBERON:0002390!2.51e-24!45;UBERON:0003061!2.51e-24!45;UBERON:0002193!1.03e-22!48;UBERON:0002405!1.03e-22!48;UBERON:0002368!1.31e-20!60;UBERON:0003929!1.24e-19!55;UBERON:0002530!6.65e-19!65;UBERON:0000949!6.51e-17!72;UBERON:0000490!4.23e-16!66;UBERON:0005911!2.48e-15!69;UBERON:0001041!5.32e-13!80;UBERON:0003081!8.03e-12!87;UBERON:0000064!3.49e-10!99;UBERON:0000926!1.78e-09!120;UBERON:0004120!1.78e-09!120;UBERON:0006603!1.78e-09!120;UBERON:0004921!1.30e-08!114;UBERON:0001007!1.96e-08!116;UBERON:0001555!1.96e-08!116;UBERON:0007026!1.96e-08!116;UBERON:0004119!2.92e-08!118;UBERON:0000925!2.92e-08!118;UBERON:0006595!2.92e-08!118;UBERON:0000475!3.23e-07!150;UBERON:0001048!4.66e-07!134
|tfbs_overrepresentation_for_novel_motifs=0.154282,0.413441,0.213094,0.803515,0.520285,0.251135,0.456171,0.2146,0.466756,0.0245769,0.349798,0.243717,2.55031,0.28487,0.311191,0,0.71098,0.480253,0.239107,0.430757,0.376857,0.446946,0.0504875,0.369267,0.365807,0.335259,1.84288,0.159049,0.999412,0.822487,0.433661,0.279781,0.0833332,0.283097,0.205169,3.8205,0.0364499,0.0396438,0.453641,0.569316,0.245123,0.274966,0.871139,0.455019,0.627656,0.10491,0.82323,1.05624,1.05356,0.182886,0.0424782,0.388142,0.381524,0.14798,0.15741,0.146875,0.117222,0.394534,0.445604,0.293925,0.0743041,0.211654,0.0240786,0.154441,0.0592213,0.74178,0.239758,0.504246,1.37869,0.385255,0.0158618,0.445394,0.00058158,1.00378,0.00967338,0.556826,2.52733,0.261886,0.516137,1.55464,0.240668,0.194831,0.209855,0.37513,0.11559,4.80506e-07,0.0407108,0.0826646,0.0286534,0.644359,1.42711,0.756207,0.0871653,0.399885,0.00296468,0.785714,0.521592,0.297139,0.516185,1.59179,0.0159841,0.279474,0.138831,0.0426394,0.372617,0.0034282,0.0603843,0.174718,0.408105,0.0784718,0.809686,0.432056,0.258369,0.0936307,0.292119,0.655551,2.17542e-05,0.384469,0.0477454,2.23307,1.61007,0.322363,0.568242,0.48774,0.331268,1.34514,0.477301,0.286428,0.238763,0.110797,0.130183,0.210916,0.6267,0.544363,0.307533,0.632544,0.450714,0.149447,0.272864,0.984367,0.616235,0.680889,0.0709003,1.02058,0.0406241,0.933448,0.0282779,0.946754,0.662115,0.529365,0.189351,4.43638e-09,0.148817,0.0669597,0.160324,0.568725,0.643558,0.144416,0.263836,0.166642,0.765125,1.77942,0.244566,0.140775,0.640349,0.0564811,0.567445,0.0404003,0.00016553
}}
}}

Revision as of 17:51, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:77013630..77013661,+p@chr10:77013630..77013661
+
Mm9::chr10:88943756..88943761,-p@chr10:88943756..88943761
-
Mm9::chr11:103101182..103101189,-p6@Map3k14
Mm9::chr11:78199896..78199915,-p@chr11:78199896..78199915
-
Mm9::chr12:74609653..74609682,-p@chr12:74609653..74609682
-
Mm9::chr13:113886116..113886128,+p@chr13:113886116..113886128
+
Mm9::chr13:113891179..113891196,-p1@Gzma
Mm9::chr13:19284660..19284672,-p@chr13:19284660..19284672
-
Mm9::chr13:19284715..19284718,-p@chr13:19284715..19284718
-
Mm9::chr13:22098274..22098286,-p5@Prss16
Mm9::chr13:22098401..22098419,+p@chr13:22098401..22098419
+
Mm9::chr13:22098433..22098443,+p@chr13:22098433..22098443
+
Mm9::chr13:22098458..22098471,+p@chr13:22098458..22098471
+
Mm9::chr13:6554640..6554680,+p@chr13:6554640..6554680
+
Mm9::chr15:102054891..102054896,-p@chr15:102054891..102054896
-
Mm9::chr15:102054924..102054934,-p@chr15:102054924..102054934
-
Mm9::chr15:99232242..99232257,+p@chr15:99232242..99232257
+
Mm9::chr17:31121023..31121034,+p@chr17:31121023..31121034
+
Mm9::chr17:84304988..84304996,+p@chr17:84304988..84304996
+
Mm9::chr18:36049329..36049351,+p@chr18:36049329..36049351
+
Mm9::chr18:75343523..75343537,+p@chr18:75343523..75343537
+
Mm9::chr19:25135498..25135543,+p@chr19:25135498..25135543
+
Mm9::chr19:25746717..25746730,-p1@2610016A17Rik
Mm9::chr19:25746737..25746748,-p2@2610016A17Rik
Mm9::chr1:153099138..153099142,-p@chr1:153099138..153099142
-
Mm9::chr1:167977954..167977965,-p@chr1:167977954..167977965
-
Mm9::chr1:167977972..167977981,-p@chr1:167977972..167977981
-
Mm9::chr1:21339679..21339700,+p1@Khdc1a
Mm9::chr1:82816230..82816240,+p@chr1:82816230..82816240
+
Mm9::chr2:11526662..11526665,-p@chr2:11526662..11526665
-
Mm9::chr2:127336845..127336856,-p@chr2:127336845..127336856
-
Mm9::chr2:147188171..147188184,-p1@ENSMUST00000140987
Mm9::chr2:147190725..147190747,+p2@Pax1
Mm9::chr2:147190749..147190769,+p1@Pax1
Mm9::chr2:147190772..147190783,+p3@Pax1
Mm9::chr2:147199584..147199599,+p@chr2:147199584..147199599
+
Mm9::chr2:147199645..147199655,+p@chr2:147199645..147199655
+
Mm9::chr2:147199683..147199691,+p@chr2:147199683..147199691
+
Mm9::chr2:147199771..147199784,+p@chr2:147199771..147199784
+
Mm9::chr2:147201264..147201265,+p@chr2:147201264..147201265
+
Mm9::chr2:147261234..147261246,+p@chr2:147261234..147261246
+
Mm9::chr2:168374548..168374559,+p@chr2:168374548..168374559
+
Mm9::chr3:135359779..135359792,-p@chr3:135359779..135359792
-
Mm9::chr3:135359806..135359811,-p@chr3:135359806..135359811
-
Mm9::chr3:135359835..135359842,-p@chr3:135359835..135359842
-
Mm9::chr3:7606505..7606519,-p@chr3:7606505..7606519
-
Mm9::chr3:7606533..7606550,-p@chr3:7606533..7606550
-
Mm9::chr3:7613738..7613765,-p1@Il7
Mm9::chr3:7613771..7613785,-p3@Il7
Mm9::chr3:89466441..89466474,+p6@Kcnn3
Mm9::chr3:89466603..89466638,+p2@Kcnn3
Mm9::chr3:89466639..89466650,+p5@Kcnn3
Mm9::chr4:102656813..102656824,-p@chr4:102656813..102656824
-
Mm9::chr4:125998389..125998402,+p@chr4:125998389..125998402
+
Mm9::chr4:139463936..139463976,+p@chr4:139463936..139463976
+
Mm9::chr4:148326988..148327026,-p@chr4:148326988..148327026
-
Mm9::chr4:148327104..148327128,-p@chr4:148327104..148327128
-
Mm9::chr4:148588267..148588305,-p3@Kif1b
Mm9::chr4:41577003..41577010,+p@chr4:41577003..41577010
+
Mm9::chr4:48447876..48447889,-p@chr4:48447876..48447889
-
Mm9::chr4:48447971..48447980,-p@chr4:48447971..48447980
-
Mm9::chr4:59927907..59927935,-p1@Slc46a2
Mm9::chr4:63815395..63815439,+p@chr4:63815395..63815439
+
Mm9::chr5:65810372..65810401,-p@chr5:65810372..65810401
-
Mm9::chr6:41483203..41483218,+p1@ENSMUST00000103283
Mm9::chr6:41483219..41483226,+p@chr6:41483219..41483226
+
Mm9::chr6:41483245..41483256,+p@chr6:41483245..41483256
+
Mm9::chr6:67289633..67289651,-p4@Il12rb2
Mm9::chr6:73583092..73583099,+p@chr6:73583092..73583099
+
Mm9::chr6:83145803..83145819,+p@chr6:83145803..83145819
+
Mm9::chr6:83145832..83145843,+p@chr6:83145832..83145843
+
Mm9::chr6:83145870..83145875,+p@chr6:83145870..83145875
+
Mm9::chr6:83145917..83145951,+p@chr6:83145917..83145951
+
Mm9::chr6:83145954..83145971,+p@chr6:83145954..83145971
+
Mm9::chr7:120532077..120532092,-p1@Pth
Mm9::chr7:123381898..123381906,-p@chr7:123381898..123381906
-
Mm9::chr7:123381926..123381941,-p@chr7:123381926..123381941
-
Mm9::chr7:137768069..137768087,+p@chr7:137768069..137768087
+
Mm9::chr7:137768096..137768115,+p@chr7:137768096..137768115
+
Mm9::chr7:148197257..148197268,-p@chr7:148197257..148197268
-
Mm9::chr8:101970650..101970654,-p@chr8:101970650..101970654
-
Mm9::chr8:125921662..125921675,+p5@Tcf25
Mm9::chr8:126721005..126721023,+p@chr8:126721005..126721023
+
Mm9::chr8:126721039..126721054,+p@chr8:126721039..126721054
+
Mm9::chr8:127998851..127998880,-p@chr8:127998851..127998880
-
Mm9::chr8:87396665..87396673,+p6@Syce2
Mm9::chr9:103401551..103401590,-p@chr9:103401551..103401590
-
Mm9::chr9:103401622..103401629,-p@chr9:103401622..103401629
-
Mm9::chr9:103401650..103401656,-p@chr9:103401650..103401656
-
Mm9::chr9:103402685..103402731,-p@chr9:103402685..103402731
-
Mm9::chr9:44819528..44819537,-p@chr9:44819528..44819537
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
thymus6.28e-4923
neck6.28e-4923
respiratory system epithelium6.28e-4923
hemolymphoid system gland6.28e-4923
pharyngeal epithelium6.28e-4923
thymic region6.28e-4923
pharyngeal gland6.28e-4923
entire pharyngeal arch endoderm6.28e-4923
thymus primordium6.28e-4923
early pharyngeal endoderm6.28e-4923
pharynx7.78e-4724
gland of gut7.78e-4724
upper respiratory tract7.78e-4724
chordate pharynx7.78e-4724
pharyngeal arch system7.78e-4724
pharyngeal region of foregut7.78e-4724
segment of respiratory tract1.75e-4127
hemopoietic organ1.57e-3829
immune organ1.57e-3829
mixed endoderm/mesoderm-derived structure1.09e-3135
organ segment1.09e-3135
craniocervical region9.06e-3136
respiratory tract7.65e-2741
respiratory system3.61e-2642
anterior region of body1.58e-2543
hematopoietic system2.51e-2445
blood island2.51e-2445
hemolymphoid system1.03e-2248
immune system1.03e-2248
endocrine gland1.31e-2060
gut epithelium1.24e-1955
gland6.65e-1965
endocrine system6.51e-1772
unilaminar epithelium4.23e-1666
endo-epithelium2.48e-1569
foregut5.32e-1380
lateral plate mesoderm8.03e-1287
organ part3.49e-1099
mesoderm1.78e-09120
mesoderm-derived structure1.78e-09120
presumptive mesoderm1.78e-09120
subdivision of digestive tract1.30e-08114
digestive system1.96e-08116
digestive tract1.96e-08116
primitive gut1.96e-08116
endoderm-derived structure2.92e-08118
endoderm2.92e-08118
presumptive endoderm2.92e-08118
organism subdivision3.23e-07150
primordium4.66e-07134


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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