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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.142192289944826,0.0572052190895671,0,0.0132597213759845,0.0333321253665857,0.127882415780397,0.115690282865568,0,0.0766449251343491,0,0.143669040685193,0.172972686926782,0.153628809860867,0.0354470656487682,0.0411126530948397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151839024235742,0,0,0.200913802025349,0.0845108642213105,0.17187568289743,0,0,0,0,0,0,0,0,0,0.0936736745874555,0,0.125836948423969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0214650888771879,0,0,0,0,0.0591612231632855,0.0290112695321563,0,0,0,0,0,0.0866592903778752,0.107200470371614,0,0,0,0,0.0491463288895459,0,0,0,0,0,0,0,0,0,0,0.0791332627562535,0,0,0,0,0,0.0517365380113473,0,0,0,0,0,0,0,0,0.0292057199673468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0479619276176895,0,0.0660154575426048,0,0,0.00714738912588365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849828766602549,0,0,0,0,0,0,0.0294389011296462,0.00480126581756624,0,0.0633328814307688,0,0,0,0,0,0,0,0,0,0.166081479949044,0.10536076625968,0.829350626566435,0.137398724818722,0.117946305307076,0,0,0,0.0736278867910527,0,0,0,0,0,0,0.0774164737207147,0.022577299118846,0.123292639445863,0.0922344099208638,0.218916923110154,0.211150140066478,0.110353348438991,0,0.188620766046218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000161254531404677,0,0,0,0,0.0685090053637401,0,0.136843881272943,0.243899288077882,0.29155966586338,0.226943730202278,0.0681778550615498,0.056886356216389,0.00404155064357494,0,0,0,0,0,0,0.054943952156948,0.0254459185317534,0,0.0479806795639235,0,0,0,0,0,0,0,0.0481920468563092,0,0,0,0,0.119259559192106,0.0137399150186045,0.0988954707917557,0.217379731275612,0.0715236385554987,0.203044877388887,0.342808339754772,0.36720785254731,0.373373243815115,0.381496521866638,0.558717806159498,0.440002073520245,0.466012543051836,0.454703926820443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0.0104528342503266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0553034373508932,0,0,0.0408018333703219,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.142192289944826,0.0572052190895671,0,0.0132597213759845,0.0333321253665857,0.127882415780397,0.115690282865568,0,0.0766449251343491,0,0.143669040685193,0.172972686926782,0.153628809860867,0.0354470656487682,0.0411126530948397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151839024235742,0,0,0.200913802025349,0.0845108642213105,0.17187568289743,0,0,0,0,0,0,0,0,0,0.0936736745874555,0,0.125836948423969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0214650888771879,0,0,0,0,0.0591612231632855,0.0290112695321563,0,0,0,0,0,0.0866592903778752,0.107200470371614,0,0,0,0,0.0491463288895459,0,0,0,0,0,0,0,0,0,0,0.0791332627562535,0,0,0,0,0,0.0517365380113473,0,0,0,0,0,0,0,0,0.0292057199673468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0479619276176895,0,0.0660154575426048,0,0,0.00714738912588365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849828766602549,0,0,0,0,0,0,0.0294389011296462,0.00480126581756624,0,0.0633328814307688,0,0,0,0,0,0,0,0,0,0.166081479949044,0.10536076625968,0.829350626566435,0.137398724818722,0.117946305307076,0,0,0,0.0736278867910527,0,0,0,0,0,0,0.0774164737207147,0.022577299118846,0.123292639445863,0.0922344099208638,0.218916923110154,0.211150140066478,0.110353348438991,0,0.188620766046218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000161254531404677,0,0,0,0,0.0685090053637401,0,0.136843881272943,0.243899288077882,0.29155966586338,0.226943730202278,0.0681778550615498,0.056886356216389,0.00404155064357494,0,0,0,0,0,0,0.054943952156948,0.0254459185317534,0,0.0479806795639235,0,0,0,0,0,0,0,0.0481920468563092,0,0,0,0,0.119259559192106,0.0137399150186045,0.0988954707917557,0.217379731275612,0.0715236385554987,0.203044877388887,0.342808339754772,0.36720785254731,0.373373243815115,0.381496521866638,0.558717806159498,0.440002073520245,0.466012543051836,0.454703926820443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0269518943326477,0.0104528342503266,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0553034373508932,0,0,0.0408018333703219,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004177!2.11e-21!29;UBERON:0005057!2.11e-21!29;UBERON:0002390!5.22e-18!45;UBERON:0003061!5.22e-18!45;UBERON:0002193!1.90e-17!48;UBERON:0002405!1.90e-17!48;UBERON:0002370!8.13e-17!23;UBERON:0000974!8.13e-17!23;UBERON:0004807!8.13e-17!23;UBERON:0005058!8.13e-17!23;UBERON:0003351!8.13e-17!23;UBERON:0009113!8.13e-17!23;UBERON:0003295!8.13e-17!23;UBERON:0009722!8.13e-17!23;UBERON:0005562!8.13e-17!23;UBERON:0007690!8.13e-17!23;UBERON:0000065!1.69e-16!41;UBERON:0000077!2.30e-16!35;UBERON:0001004!6.70e-16!42;UBERON:0006562!7.38e-16!24;UBERON:0003408!7.38e-16!24;UBERON:0001557!7.38e-16!24;UBERON:0001042!7.38e-16!24;UBERON:0008814!7.38e-16!24;UBERON:0009145!7.38e-16!24;UBERON:0001041!9.99e-16!80;UBERON:0000072!2.01e-13!27;UBERON:0005911!4.73e-11!69;UBERON:0003081!1.13e-09!87;UBERON:0007811!1.20e-09!36;UBERON:0000063!4.88e-09!35;UBERON:0004921!2.79e-08!114;UBERON:0001048!4.01e-08!134;UBERON:0000475!5.08e-08!150;UBERON:0001007!6.01e-08!116;UBERON:0001555!6.01e-08!116;UBERON:0007026!6.01e-08!116;UBERON:0000153!6.03e-08!43;UBERON:0002368!6.25e-08!60;UBERON:0003929!9.94e-08!55;UBERON:0004119!1.25e-07!118;UBERON:0000925!1.25e-07!118;UBERON:0006595!1.25e-07!118;UBERON:0002530!8.85e-07!65
}}
}}

Revision as of 18:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:34306974..34306986,-p@chr11:34306974..34306986
-
Mm9::chr13:41520735..41520748,-p@chr13:41520735..41520748
-
Mm9::chr15:6569678..6569708,+p3@Fyb
Mm9::chr15:80428150..80428195,+p@chr15:80428150..80428195
+
Mm9::chr16:92789592..92789597,-p@chr16:92789592..92789597
-
Mm9::chr17:47646397..47646406,+p@chr17:47646397..47646406
+
Mm9::chr18:50255367..50255372,+p@chr18:50255367..50255372
+
Mm9::chr19:25151025..25151028,+p@chr19:25151025..25151028
+
Mm9::chr19:34388190..34388198,+p@chr19:34388190..34388198
+
Mm9::chr19:53534738..53534752,-p@chr19:53534738..53534752
-
Mm9::chr1:137040905..137040930,+p@chr1:137040905..137040930
+
Mm9::chr1:139987046..139987054,-p@chr1:139987046..139987054
-
Mm9::chr1:173338033..173338042,+p@chr1:173338033..173338042
+
Mm9::chr1:173338148..173338165,+p@chr1:173338148..173338165
+
Mm9::chr1:173338341..173338353,+p@chr1:173338341..173338353
+
Mm9::chr1:173785032..173785040,+p@chr1:173785032..173785040
+
Mm9::chr1:173785160..173785168,+p@chr1:173785160..173785168
+
Mm9::chr1:173786265..173786302,+p@chr1:173786265..173786302
+
Mm9::chr1:54971085..54971093,-p@chr1:54971085..54971093
-
Mm9::chr1:80712280..80712284,-p@chr1:80712280..80712284
-
Mm9::chr1:89549888..89549901,+p@chr1:89549888..89549901
+
Mm9::chr2:120194528..120194531,-p@chr2:120194528..120194531
-
Mm9::chr2:18892103..18892115,-p@chr2:18892103..18892115
-
Mm9::chr2:22660147..22660159,+p@chr2:22660147..22660159
+
Mm9::chr3:9778793..9778804,-p@chr3:9778793..9778804
-
Mm9::chr4:102807447..102807455,+p@chr4:102807447..102807455
+
Mm9::chr4:116232752..116232757,+p@chr4:116232752..116232757
+
Mm9::chr5:89210986..89210998,+p@chr5:89210986..89210998
+
Mm9::chr6:124677131..124677142,-p@chr6:124677131..124677142
-
Mm9::chr6:146064611..146064614,-p@chr6:146064611..146064614
-
Mm9::chr6:146203069..146203074,-p@chr6:146203069..146203074
-
Mm9::chr6:146238584..146238587,-p@chr6:146238584..146238587
-
Mm9::chr6:99117753..99117757,-p@chr6:99117753..99117757
-
Mm9::chr7:149652693..149652739,+p@chr7:149652693..149652739
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemopoietic organ2.11e-2129
immune organ2.11e-2129
hematopoietic system5.22e-1845
blood island5.22e-1845
hemolymphoid system1.90e-1748
immune system1.90e-1748
thymus8.13e-1723
neck8.13e-1723
respiratory system epithelium8.13e-1723
hemolymphoid system gland8.13e-1723
pharyngeal epithelium8.13e-1723
thymic region8.13e-1723
pharyngeal gland8.13e-1723
entire pharyngeal arch endoderm8.13e-1723
thymus primordium8.13e-1723
early pharyngeal endoderm8.13e-1723
respiratory tract1.69e-1641
mixed endoderm/mesoderm-derived structure2.30e-1635
respiratory system6.70e-1642
pharynx7.38e-1624
gland of gut7.38e-1624
upper respiratory tract7.38e-1624
chordate pharynx7.38e-1624
pharyngeal arch system7.38e-1624
pharyngeal region of foregut7.38e-1624
foregut9.99e-1680
segment of respiratory tract2.01e-1327
endo-epithelium4.73e-1169
lateral plate mesoderm1.13e-0987
craniocervical region1.20e-0936
organ segment4.88e-0935
subdivision of digestive tract2.79e-08114
primordium4.01e-08134
organism subdivision5.08e-08150
digestive system6.01e-08116
digestive tract6.01e-08116
primitive gut6.01e-08116
anterior region of body6.03e-0843
endocrine gland6.25e-0860
gut epithelium9.94e-0855
endoderm-derived structure1.25e-07118
endoderm1.25e-07118
presumptive endoderm1.25e-07118
gland8.85e-0765


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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