FFCP PHASE1:Hg19::chr12:50478977..50479040,+: Difference between revisions
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|ontology_enrichment_celltype=CL:0000066!7.94e-39!254;CL:0000063!7.40e-21!578;CL:0000548!2.99e-17!679;CL:0000004!2.99e-17!679;CL:0000255!2.99e-17!679;CL:0000012!1.73e-16!682;CL:0000076!3.66e-15!62;CL:0000003!5.04e-15!722;CL:0000220!1.53e-13!246;CL:0002321!7.95e-13!248;CL:0000213!1.90e-12!57;CL:0000215!1.90e-12!57;CL:0002078!9.49e-12!44;CL:0000115!2.63e-11!35;CL:0002139!6.22e-11!24;CL:0000542!3.72e-10!53;CL:0000051!3.72e-10!53;CL:0000071!8.14e-10!18;CL:0002546!8.14e-10!18;CL:0000838!9.32e-10!52;CL:0000144!1.37e-09!625;CL:0002076!2.91e-08!43;CL:0002371!3.76e-08!591;CL:0000223!4.96e-08!59;CL:1000449!1.91e-07!16;CL:1000497!2.26e-07!18;CL:0002518!2.26e-07!18;CL:0000945!3.00e-07!24;CL:0000826!3.00e-07!24 | |ontology_enrichment_celltype=CL:0000066!7.94e-39!254;CL:0000063!7.40e-21!578;CL:0000548!2.99e-17!679;CL:0000004!2.99e-17!679;CL:0000255!2.99e-17!679;CL:0000012!1.73e-16!682;CL:0000076!3.66e-15!62;CL:0000003!5.04e-15!722;CL:0000220!1.53e-13!246;CL:0002321!7.95e-13!248;CL:0000213!1.90e-12!57;CL:0000215!1.90e-12!57;CL:0002078!9.49e-12!44;CL:0000115!2.63e-11!35;CL:0002139!6.22e-11!24;CL:0000542!3.72e-10!53;CL:0000051!3.72e-10!53;CL:0000071!8.14e-10!18;CL:0002546!8.14e-10!18;CL:0000838!9.32e-10!52;CL:0000144!1.37e-09!625;CL:0002076!2.91e-08!43;CL:0002371!3.76e-08!591;CL:0000223!4.96e-08!59;CL:1000449!1.91e-07!16;CL:1000497!2.26e-07!18;CL:0002518!2.26e-07!18;CL:0000945!3.00e-07!24;CL:0000826!3.00e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0002139;7.08e-11;24!CL:0000115;8.58e-10;36!CL:0000071;8.65e-10;18!CL:1000449;2.26e-08;15!CL:1000497;3.32e-08;17!CL:0002518;3.32e-08;17!CL:0000076;5.49e-08;63!CL:0000213;8.24e-08;58!CL:0000215;8.24e-08;58!CL:0002078;9.90e-08;45!CL:0000945;3.08e-07;24!CL:0002681;6.67e-07;12!CL:0002584;6.67e-07;12 | |ontology_enrichment_celltype_v019=CL:0002139;7.08e-11;24!CL:0000115;8.58e-10;36!CL:0000071;8.65e-10;18!CL:1000449;2.26e-08;15!CL:1000497;3.32e-08;17!CL:0002518;3.32e-08;17!CL:0000076;5.49e-08;63!CL:0000213;8.24e-08;58!CL:0000215;8.24e-08;58!CL:0002078;9.90e-08;45!CL:0000945;3.08e-07;24!CL:0002681;6.67e-07;12!CL:0002584;6.67e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.81e-39,253;CL:0000076,1.05e-14,63;CL:0002321,7.85e-13,250;CL:0000213,9.61e-13,58;CL:0000215,9.61e-13,58;CL:0002078,4.78e-12,45;CL:0000115,1.32e-11,36;CL:0002139,6.22e-11,24;CL:0000542,3.72e-10,53;CL:0000051,3.72e-10,53;CL:0000071,8.14e-10,18;CL:0002546,8.14e-10,18;CL:0000838,9.32e-10,52;CL:0002076,1.22e-08,42;CL:1000449,2.31e-08,15;CL:0000223,2.51e-08,58;CL:1000497,3.34e-08,17;CL:0002518,3.34e-08,17;CL:0000945,3.00e-07,24;CL:0000826,3.00e-07,24;CL:0002681,6.81e-07,12;CL:0002584,6.81e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;8.65e-10;18 | |ontology_enrichment_development_v019=CL:0002546;8.65e-10;18 | ||
|ontology_enrichment_disease=DOID:162!9.10e-13!235;DOID:14566!9.35e-13!239;DOID:0050687!5.20e-09!143;DOID:305!2.61e-08!106 | |ontology_enrichment_disease=DOID:162!9.10e-13!235;DOID:14566!9.35e-13!239;DOID:0050687!5.20e-09!143;DOID:305!2.61e-08!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,9.10e-13,235;DOID:14566,9.35e-13,239;DOID:0050687,5.20e-09,143;DOID:305,2.61e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001986!8.14e-10!18;UBERON:0004638!8.14e-10!18;UBERON:0004852!8.14e-10!18;UBERON:0000487!1.87e-09!22;UBERON:0006914!7.02e-08!25;UBERON:0004211!1.91e-07!16;UBERON:0001285!1.91e-07!16;UBERON:0007684!1.91e-07!16;UBERON:0003220!1.91e-07!16;UBERON:0004208!1.91e-07!16;UBERON:0003887!9.52e-07!21 | |ontology_enrichment_uberon=UBERON:0001986!8.14e-10!18;UBERON:0004638!8.14e-10!18;UBERON:0004852!8.14e-10!18;UBERON:0000487!1.87e-09!22;UBERON:0006914!7.02e-08!25;UBERON:0004211!1.91e-07!16;UBERON:0001285!1.91e-07!16;UBERON:0007684!1.91e-07!16;UBERON:0003220!1.91e-07!16;UBERON:0004208!1.91e-07!16;UBERON:0003887!9.52e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.65e-10;18!UBERON:0001986;8.65e-10;18!UBERON:0004852;8.65e-10;18!UBERON:0000490;1.37e-09;33!UBERON:0000487;1.98e-09;22!UBERON:0006555;2.26e-08;15!UBERON:0004819;2.26e-08;15!UBERON:0001285;2.26e-08;15!UBERON:0007684;2.26e-08;15!UBERON:0006914;6.93e-08;25!UBERON:0000353;4.20e-07;15!UBERON:0001851;5.18e-07;15!UBERON:0006554;6.02e-07;30!UBERON:0001008;6.02e-07;30!UBERON:0001225;6.67e-07;12!UBERON:0008987;6.67e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0004638;8.65e-10;18!UBERON:0001986;8.65e-10;18!UBERON:0004852;8.65e-10;18!UBERON:0000490;1.37e-09;33!UBERON:0000487;1.98e-09;22!UBERON:0006555;2.26e-08;15!UBERON:0004819;2.26e-08;15!UBERON:0001285;2.26e-08;15!UBERON:0007684;2.26e-08;15!UBERON:0006914;6.93e-08;25!UBERON:0000353;4.20e-07;15!UBERON:0001851;5.18e-07;15!UBERON:0006554;6.02e-07;30!UBERON:0001008;6.02e-07;30!UBERON:0001225;6.67e-07;12!UBERON:0008987;6.67e-07;12 | ||
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| ||
|short_description=p1@SMARCD1 | |short_description=p1@SMARCD1 | ||
}} | }} |
Revision as of 19:12, 20 November 2012
Short description: | p1@SMARCD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SMARCD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000381513, NM_003076, NM_139071, uc001rvx.3, uc001rvy.3, uc009zlp.2, uc010smo.1_5end |
EntrezGene: | SMARCD1 |
HGNC: | 11106 |
UniProt: | Q96GM5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.81e-39 | 253 |
squamous epithelial cell | 1.05e-14 | 63 |
embryonic cell | 7.85e-13 | 250 |
lining cell | 9.61e-13 | 58 |
barrier cell | 9.61e-13 | 58 |
meso-epithelial cell | 4.78e-12 | 45 |
endothelial cell | 1.32e-11 | 36 |
endothelial cell of vascular tree | 6.22e-11 | 24 |
lymphocyte | 3.72e-10 | 53 |
common lymphoid progenitor | 3.72e-10 | 53 |
blood vessel endothelial cell | 8.14e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.14e-10 | 18 |
lymphoid lineage restricted progenitor cell | 9.32e-10 | 52 |
endo-epithelial cell | 1.22e-08 | 42 |
epithelial cell of nephron | 2.31e-08 | 15 |
endodermal cell | 2.51e-08 | 58 |
kidney cell | 3.34e-08 | 17 |
kidney epithelial cell | 3.34e-08 | 17 |
lymphocyte of B lineage | 3.00e-07 | 24 |
pro-B cell | 3.00e-07 | 24 |
kidney cortical cell | 6.81e-07 | 12 |
renal cortical epithelial cell | 6.81e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 8.14e-10 | 18 |
endothelium | 8.14e-10 | 18 |
cardiovascular system endothelium | 8.14e-10 | 18 |
simple squamous epithelium | 1.87e-09 | 22 |
nephron epithelium | 2.31e-08 | 15 |
renal tubule | 2.31e-08 | 15 |
nephron tubule | 2.31e-08 | 15 |
nephron | 2.31e-08 | 15 |
uriniferous tubule | 2.31e-08 | 15 |
nephrogenic mesenchyme | 2.31e-08 | 15 |
squamous epithelium | 7.02e-08 | 25 |
excretory tube | 2.90e-07 | 16 |
kidney epithelium | 2.90e-07 | 16 |
cortex | 4.49e-07 | 15 |
parenchyma | 4.85e-07 | 15 |
trunk region element | 5.19e-07 | 101 |
cortex of kidney | 6.81e-07 | 12 |
renal parenchyma | 6.81e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.10e-13 | 235 |
disease of cellular proliferation | 9.35e-13 | 239 |
cell type cancer | 5.20e-09 | 143 |
carcinoma | 2.61e-08 | 106 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.