Personal tools

Coexpression cluster:C3638: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 5: Line 5:
|ontology_enrichment_disease=DOID:299!2.25e-13!25;DOID:3001!1.24e-10!6
|ontology_enrichment_disease=DOID:299!2.25e-13!25;DOID:3001!1.24e-10!6
|ontology_enrichment_uberon=UBERON:0003887!2.32e-24!21;UBERON:0001008!5.31e-21!45;UBERON:0004876!4.50e-20!20;UBERON:0006554!1.28e-19!44;UBERON:0000080!1.67e-19!18;UBERON:0002120!1.67e-19!18;UBERON:0004875!1.67e-19!18;UBERON:0005721!1.67e-19!18;UBERON:0005754!1.67e-19!18;UBERON:0007297!1.67e-19!18;UBERON:0000058!2.91e-19!26;UBERON:0002113!9.24e-19!27;UBERON:0003918!9.24e-19!27;UBERON:0005095!9.24e-19!27;UBERON:0007687!9.24e-19!27;UBERON:0005172!7.23e-18!55;UBERON:0005173!7.23e-18!55;UBERON:0009773!9.54e-18!12;UBERON:0001231!9.54e-18!12;UBERON:0004810!9.54e-18!12;UBERON:0006555!1.81e-17!17;UBERON:0005103!1.81e-17!17;UBERON:0000083!1.81e-17!17;UBERON:0009201!1.81e-17!17;UBERON:0004819!1.81e-17!17;UBERON:0006553!1.81e-17!17;UBERON:0003074!1.81e-17!17;UBERON:0003060!1.81e-17!17;UBERON:0000489!5.29e-17!32;UBERON:0003064!1.58e-15!37;UBERON:0004211!1.73e-15!16;UBERON:0001285!1.73e-15!16;UBERON:0007684!1.73e-15!16;UBERON:0003220!1.73e-15!16;UBERON:0004208!1.73e-15!16;UBERON:0002417!1.99e-15!61;UBERON:0000916!1.99e-15!61;UBERON:0004175!2.86e-13!25;UBERON:0003886!3.15e-11!63;UBERON:0003133!4.89e-11!48;UBERON:0005156!2.39e-10!59;UBERON:0000990!2.39e-10!59;UBERON:0001225!2.56e-10!13;UBERON:0008987!2.56e-10!13;UBERON:0000488!1.44e-09!4;UBERON:0002553!1.54e-09!70;UBERON:0005177!5.84e-09!107;UBERON:0005795!9.28e-09!22;UBERON:0003975!1.12e-08!22;UBERON:0006947!1.33e-08!3;UBERON:0004054!1.33e-08!3;UBERON:0001851!4.37e-08!16;UBERON:0006853!5.45e-08!3;UBERON:0007685!5.45e-08!3;UBERON:0004134!5.45e-08!3;UBERON:0000466!9.11e-08!126;UBERON:0000353!1.61e-07!17;UBERON:0001778!1.62e-07!3;UBERON:0001775!1.62e-07!3;UBERON:0003134!1.69e-07!37;UBERON:0000474!1.69e-07!37;UBERON:0009569!1.78e-07!113;UBERON:0000995!1.82e-07!21;UBERON:0004177!8.53e-07!7
|ontology_enrichment_uberon=UBERON:0003887!2.32e-24!21;UBERON:0001008!5.31e-21!45;UBERON:0004876!4.50e-20!20;UBERON:0006554!1.28e-19!44;UBERON:0000080!1.67e-19!18;UBERON:0002120!1.67e-19!18;UBERON:0004875!1.67e-19!18;UBERON:0005721!1.67e-19!18;UBERON:0005754!1.67e-19!18;UBERON:0007297!1.67e-19!18;UBERON:0000058!2.91e-19!26;UBERON:0002113!9.24e-19!27;UBERON:0003918!9.24e-19!27;UBERON:0005095!9.24e-19!27;UBERON:0007687!9.24e-19!27;UBERON:0005172!7.23e-18!55;UBERON:0005173!7.23e-18!55;UBERON:0009773!9.54e-18!12;UBERON:0001231!9.54e-18!12;UBERON:0004810!9.54e-18!12;UBERON:0006555!1.81e-17!17;UBERON:0005103!1.81e-17!17;UBERON:0000083!1.81e-17!17;UBERON:0009201!1.81e-17!17;UBERON:0004819!1.81e-17!17;UBERON:0006553!1.81e-17!17;UBERON:0003074!1.81e-17!17;UBERON:0003060!1.81e-17!17;UBERON:0000489!5.29e-17!32;UBERON:0003064!1.58e-15!37;UBERON:0004211!1.73e-15!16;UBERON:0001285!1.73e-15!16;UBERON:0007684!1.73e-15!16;UBERON:0003220!1.73e-15!16;UBERON:0004208!1.73e-15!16;UBERON:0002417!1.99e-15!61;UBERON:0000916!1.99e-15!61;UBERON:0004175!2.86e-13!25;UBERON:0003886!3.15e-11!63;UBERON:0003133!4.89e-11!48;UBERON:0005156!2.39e-10!59;UBERON:0000990!2.39e-10!59;UBERON:0001225!2.56e-10!13;UBERON:0008987!2.56e-10!13;UBERON:0000488!1.44e-09!4;UBERON:0002553!1.54e-09!70;UBERON:0005177!5.84e-09!107;UBERON:0005795!9.28e-09!22;UBERON:0003975!1.12e-08!22;UBERON:0006947!1.33e-08!3;UBERON:0004054!1.33e-08!3;UBERON:0001851!4.37e-08!16;UBERON:0006853!5.45e-08!3;UBERON:0007685!5.45e-08!3;UBERON:0004134!5.45e-08!3;UBERON:0000466!9.11e-08!126;UBERON:0000353!1.61e-07!17;UBERON:0001778!1.62e-07!3;UBERON:0001775!1.62e-07!3;UBERON:0003134!1.69e-07!37;UBERON:0000474!1.69e-07!37;UBERON:0009569!1.78e-07!113;UBERON:0000995!1.82e-07!21;UBERON:0004177!8.53e-07!7
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.596561,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.312578,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.138852,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.713218,0.782949,0.635872,0.563047,0.823736,0.807281,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.248224,0.271958,0.292154,0.405773,0.39729,0.581713,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.463191,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.821217,0.747852,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.625945,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.762864,0.581837,0.412837,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.650179,0.589326,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.807485,0.428671,0.228096,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.601433,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.753577,0.206222,0.525396,0.651524,0.437176,0.269226,0.339277,0.552319,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.273024,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.655293,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.936279,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.407281,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.580441,0.643768,0.432035,0.722159,0.390366,0.48809,0.50058,0.443185,0.522904,0.875915,0.871256,0.227104,0.166658,0.617852,0.38649,0.284625,0.504757,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.777351,0.390974,0.73485,0.683217,0.161598,0.751174,0.644754,0.150692,0.799185,0.37357,0.78509,0.477353,0.452741,0.746954,0.771991,0.20342,0.200493,0.20558,0.300504,0.25656,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.20075,0.314429,0.181415,0.282286,0.78,0.616388,0.408413,0.165147,0.322213,0.656109,0.33942,0.61031,0.387276,0.522605,0.802166,0.180745,0.222037,0.416621,0.416292,0.462712,0.734551,0.057399,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.365487,0.534741,0.39088,0.363192,0.236011,0.203486,0.273398,0.375787,0.4466,0.351067,0.275347,0.269604,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.457886,0.156714,0.220231,0.509064,0.196976,0.191517,0.463751,0.601877,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.52832,0.299887,0.634365,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.255516,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.0218443,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.21382,0.207559,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435
}}
}}

Revision as of 19:19, 8 August 2012


Full id: C3638_serous_seminal_ductus_clear_endometrial_endometrioid_epididymis



Phase1 CAGE Peaks

Hg19::chr17:42100581..42100589,-p@chr17:42100581..42100589
-
Hg19::chr17:42101153..42101171,-p@chr17:42101153..42101171
-
Hg19::chr1:206288186..206288203,-p1@C1orf186


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
intraembryonic coelom2.32e-2421
renal system5.31e-2145
urogenital ridge4.50e-2020
urinary system structure1.28e-1944
mesonephros1.67e-1918
pronephros1.67e-1918
nephrogenic cord1.67e-1918
pronephric mesoderm1.67e-1918
rostral part of nephrogenic cord1.67e-1918
presumptive pronephric mesoderm1.67e-1918
duct2.91e-1926
kidney9.24e-1927
kidney mesenchyme9.24e-1927
kidney rudiment9.24e-1927
kidney field9.24e-1927
abdomen element7.23e-1855
abdominal segment element7.23e-1855
renal tubule9.54e-1812
nephron tubule9.54e-1812
nephron tubule epithelium9.54e-1812
excretory tube1.81e-1717
mesonephric epithelium1.81e-1717
mesonephric tubule1.81e-1717
nephric duct1.81e-1717
kidney epithelium1.81e-1717
renal duct1.81e-1717
mesonephric duct1.81e-1717
pronephric duct1.81e-1717
cavitated compound organ5.29e-1732
intermediate mesoderm1.58e-1537
nephron epithelium1.73e-1516
nephron1.73e-1516
uriniferous tubule1.73e-1516
metanephric mesenchyme1.73e-1516
nephrogenic mesenchyme1.73e-1516
abdominal segment of trunk1.99e-1561
abdomen1.99e-1561
internal genitalia2.86e-1325
body cavity precursor3.15e-1163
reproductive organ4.89e-1148
reproductive structure2.39e-1059
reproductive system2.39e-1059
cortex of kidney2.56e-1013
renal parenchyma2.56e-1013
atypical epithelium1.44e-094
anatomical cavity1.54e-0970
trunk region element5.84e-09107
embryonic uterus9.28e-0922
internal female genitalia1.12e-0822
male genital duct1.33e-083
internal male genitalia1.33e-083
cortex4.37e-0816
renal cortex tubule5.45e-083
region of nephron tubule5.45e-083
proximal tubule5.45e-083
immaterial anatomical entity9.11e-08126
parenchyma1.61e-0717
ciliary epithelium1.62e-073
ciliary body1.62e-073
female reproductive organ1.69e-0737
female reproductive system1.69e-0737
subdivision of trunk1.78e-07113
uterus1.82e-0721
hemopoietic organ8.53e-077
Disease
Ontology termp-valuen
adenocarcinoma2.25e-1325
female reproductive endometrioid cancer1.24e-106


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C3638&oldid=1992086"