FFCP PHASE1:Hg19::chr10:49199808..49199839,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:49199808..49199839,- | |||
|description=CAGE_peak_at_chr10:49199808..49199839,- | |description=CAGE_peak_at_chr10:49199808..49199839,- | ||
|id=chr10:49199808..49199839,- | |id=chr10:49199808..49199839,- | ||
|ontology_enrichment_celltype=CL:0000066!3.29e-40!254;CL:0002076!2.30e-22!43;CL:0000223!4.27e-17!59;CL:0000076!5.59e-17!62;CL:0002251!3.49e-14!21;CL:0000077!4.80e-12!19;CL:0002368!2.88e-10!13;CL:0002159!7.69e-09!13;CL:0000622!4.93e-07!5 | |ontology_enrichment_celltype=CL:0000066!3.29e-40!254;CL:0002076!2.30e-22!43;CL:0000223!4.27e-17!59;CL:0000076!5.59e-17!62;CL:0002251!3.49e-14!21;CL:0000077!4.80e-12!19;CL:0002368!2.88e-10!13;CL:0002159!7.69e-09!13;CL:0000622!4.93e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002251;2.03e-22;20!CL:0002076;3.59e-22;42!CL:0000077;2.54e-13;19!CL:0000076;4.51e-11;63!CL:0000349;6.27e-11;19!CL:0002159;8.56e-10;14!CL:0000622;1.21e-09;5!CL:0002368;2.45e-08;13!CL:0000154;5.89e-08;6!CL:0000244;6.37e-08;4!CL:0000731;6.37e-08;4!CL:0000150;2.27e-07;9!CL:0002621;3.87e-07;3!CL:0002577;4.41e-07;3!CL:0002166;8.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.14e-45,253;CL:0002076,6.79e-27,42;CL:0000076,1.45e-22,63;CL:0002251,2.87e-22,20;CL:0000223,1.37e-20,58;CL:0000077,1.92e-13,19;CL:0000349,5.97e-11,19;CL:0002159,8.44e-10,14;CL:0000622,1.45e-09,5;CL:0002368,2.51e-08,13;CL:0000154,6.82e-08,6;CL:0000244,8.67e-08,4;CL:0000731,8.67e-08,4;CL:0002321,2.55e-07,250;CL:0000150,2.61e-07,9;CL:0002621,4.42e-07,3;CL:0002577,5.19e-07,3;CL:0002166,7.14e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;4.75e-11;58!UBERON:0008947;1.70e-09;29 | |||
|ontology_enrichment_disease=DOID:305!1.63e-19!106;DOID:0050687!7.06e-14!143;DOID:1749!2.64e-13!14;DOID:162!1.90e-12!235;DOID:14566!9.44e-12!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.87e-19;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.55e-19,14;DOID:305,1.33e-18,106;DOID:0050687,3.75e-14,143;DOID:162,1.94e-10,235;DOID:14566,6.12e-10,239 | |||
|ontology_enrichment_uberon=UBERON:0001004!7.97e-24!72;UBERON:0004119!5.44e-23!169;UBERON:0000925!5.44e-23!169;UBERON:0006595!5.44e-23!169;UBERON:0000065!2.28e-19!53;UBERON:0000077!3.84e-16!130;UBERON:0001007!2.48e-15!155;UBERON:0001555!2.48e-15!155;UBERON:0007026!2.48e-15!155;UBERON:0000072!1.21e-14!46;UBERON:0008947!8.21e-14!38;UBERON:0003258!8.21e-14!38;UBERON:0004921!1.57e-13!129;UBERON:0004185!1.57e-13!129;UBERON:0005631!7.54e-13!14;UBERON:0000158!7.54e-13!14;UBERON:0000161!3.82e-12!35;UBERON:0001041!7.84e-12!98;UBERON:0001557!9.89e-12!19;UBERON:0001737!2.43e-11!9;UBERON:0000344!2.19e-10!12;UBERON:0000166!8.21e-10!21;UBERON:0003124!2.03e-09!7;UBERON:0000064!1.61e-08!219;UBERON:0005911!1.92e-08!82;UBERON:0003729!3.43e-08!5;UBERON:0005153!7.82e-08!37;UBERON:0000165!1.67e-07!28;UBERON:0000930!1.67e-07!28;UBERON:0005157!3.22e-07!51;UBERON:0000365!4.07e-07!5;UBERON:0003343!4.18e-07!4;UBERON:0004785!4.18e-07!4;UBERON:0000478!4.56e-07!24;UBERON:0005156!6.71e-07!59;UBERON:0000990!6.71e-07!59;UBERON:0005178!6.88e-07!34;UBERON:0002224!6.88e-07!34;UBERON:0000464!9.45e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.01e-15;9!UBERON:0001557;1.01e-15;9!UBERON:0000344;1.74e-12;20!UBERON:0005631;4.31e-12;10!UBERON:0000158;4.31e-12;10!UBERON:0000065;5.04e-12;44!UBERON:0001004;2.28e-11;65!UBERON:0000072;3.84e-10;37!UBERON:0000365;8.01e-10;5!UBERON:0003343;1.20e-09;4!UBERON:0004785;1.20e-09;4!UBERON:0005911;1.23e-09;36!UBERON:0000486;1.25e-09;12!UBERON:0003729;1.45e-09;13!UBERON:0000161;2.86e-09;19!UBERON:0000166;2.86e-09;19!UBERON:0003350;1.06e-08;8!UBERON:0005910;4.20e-08;6!UBERON:0000478;4.29e-08;24!UBERON:0000165;6.14e-08;28!UBERON:0000305;1.72e-07;7!UBERON:0001949;3.87e-07;3!UBERON:0003929;5.32e-07;7!UBERON:0004923;9.42e-07;55!UBERON:0004807;9.84e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.19e-20,160;UBERON:0000925,3.19e-20,160;UBERON:0006595,3.19e-20,160;UBERON:0001004,1.37e-19,74;UBERON:0005631,7.15e-16,14;UBERON:0000158,7.15e-16,14;UBERON:0001737,7.58e-16,9;UBERON:0000065,7.17e-14,54;UBERON:0000344,1.99e-12,20;UBERON:0001007,3.47e-12,145;UBERON:0001555,3.47e-12,145;UBERON:0007026,3.47e-12,145;UBERON:0008947,4.18e-11,38;UBERON:0003258,4.18e-11,38;UBERON:0000072,1.53e-10,47;UBERON:0004923,2.99e-10,66;UBERON:0003124,4.48e-10,7;UBERON:0001557,5.54e-10,19;UBERON:0000365,1.10e-09,5;UBERON:0003343,1.14e-09,4;UBERON:0004785,1.14e-09,4;UBERON:0003729,1.49e-09,13;UBERON:0004921,1.55e-09,118;UBERON:0000166,3.85e-09,22;UBERON:0001041,3.86e-09,87;UBERON:0000161,5.55e-09,36;UBERON:0003350,1.25e-08,8;UBERON:0000478,4.13e-08,24;UBERON:0005910,5.42e-08,6;UBERON:0000165,1.44e-07,29;UBERON:0000930,1.44e-07,29;UBERON:0000305,1.56e-07,7;UBERON:0001949,4.42e-07,3 | |||
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|short_description=p@chr10:49199808..49199839,- | |short_description=p@chr10:49199808..49199839,- | ||
}} | }} |
Latest revision as of 13:55, 23 July 2015
Short description: | p@chr10:49199808..49199839, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:49199808..49199839, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.14e-45 | 253 |
endo-epithelial cell | 6.79e-27 | 42 |
squamous epithelial cell | 1.45e-22 | 63 |
epithelial cell of alimentary canal | 2.87e-22 | 20 |
endodermal cell | 1.37e-20 | 58 |
mesothelial cell | 1.92e-13 | 19 |
extraembryonic cell | 5.97e-11 | 19 |
general ecto-epithelial cell | 8.44e-10 | 14 |
acinar cell | 1.45e-09 | 5 |
respiratory epithelial cell | 2.51e-08 | 13 |
protein secreting cell | 6.82e-08 | 6 |
transitional epithelial cell | 8.67e-08 | 4 |
urothelial cell | 8.67e-08 | 4 |
embryonic cell | 2.55e-07 | 250 |
glandular epithelial cell | 2.61e-07 | 9 |
gingival epithelial cell | 4.42e-07 | 3 |
placental epithelial cell | 5.19e-07 | 3 |
epithelial cell of Malassez | 7.14e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.19e-20 | 160 |
endoderm | 3.19e-20 | 160 |
presumptive endoderm | 3.19e-20 | 160 |
respiratory system | 1.37e-19 | 74 |
extraembryonic membrane | 7.15e-16 | 14 |
membranous layer | 7.15e-16 | 14 |
larynx | 7.58e-16 | 9 |
respiratory tract | 7.17e-14 | 54 |
mucosa | 1.99e-12 | 20 |
digestive system | 3.47e-12 | 145 |
digestive tract | 3.47e-12 | 145 |
primitive gut | 3.47e-12 | 145 |
respiratory primordium | 4.18e-11 | 38 |
endoderm of foregut | 4.18e-11 | 38 |
segment of respiratory tract | 1.53e-10 | 47 |
organ component layer | 2.99e-10 | 66 |
chorion | 4.48e-10 | 7 |
upper respiratory tract | 5.54e-10 | 19 |
urothelium | 1.10e-09 | 5 |
mucosa of oral region | 1.14e-09 | 4 |
respiratory system mucosa | 1.14e-09 | 4 |
mouth mucosa | 1.49e-09 | 13 |
subdivision of digestive tract | 1.55e-09 | 118 |
oral opening | 3.85e-09 | 22 |
foregut | 3.86e-09 | 87 |
orifice | 5.55e-09 | 36 |
epithelium of mucosa | 1.25e-08 | 8 |
extraembryonic structure | 4.13e-08 | 24 |
transitional epithelium | 5.42e-08 | 6 |
mouth | 1.44e-07 | 29 |
stomodeum | 1.44e-07 | 29 |
amnion | 1.56e-07 | 7 |
gingival epithelium | 4.42e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.55e-19 | 14 |
carcinoma | 1.33e-18 | 106 |
cell type cancer | 3.75e-14 | 143 |
cancer | 1.94e-10 | 235 |
disease of cellular proliferation | 6.12e-10 | 239 |