FF:11605-120I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004909 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008199;DRR009071;DRZ000496;DRZ001881;DRZ011846;DRZ013231 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0002494,CL:0000737,CL:0000746 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000118 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Cardiac%2520Myocyte%252c%2520donor2.CNhs12350.11605-120I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11605-120I3 | |id=FF:11605-120I3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000118 | ||
|is_obsolete= | |||
|library_id=CNhs12350 | |||
|library_id_phase_based=2:CNhs12350 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11605 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11605 | |||
|name=Cardiac Myocyte, donor2 | |name=Cardiac Myocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12350,LSID913,release011,COMPLETED | |profile_hcage=CNhs12350,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.11700472786963,0.342409864153936,0,0,0,0,0,0,0,0,0,0,0,0.222898696087275,0,0.325546747612917,0,0,0,0,0,0.468220643733678,0,0,0.568110775278401,0,0,0,0,0,0,0,0,0,0,0,0,-0.0344503689223756,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.381877396718739,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0380375011935593,0,0,0,0,0,0,-0.0274494029969004,0,0,0,-0.0584468268118252,-0.0264594362246678,0,0.369475932942402,0,0,-0.0980353512377064,0.374892054383017,0,0,0,0,0,0,0.222898696087275,0,0,0,0,0,0,0,0,0,0,0.0150757541211765,0.222898696087275,0,0,-0.00576417895262732,-0.0284393673948361,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.369475932942402,0,0,0.122297057656837,0,0.00478353920933594,-0.143515142523472,0,0,-0.0031062414576975,0,0,0,0,0,0,0,0,0,0.35074989100878,0,0.319063381353087,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.145161427652964,-0.0683442610773682,0,0,0,0,0.197586567137744,0,-0.120879483793741,0.140178527763857,0.212069841921037,0.384173183811306,-0.055712496781182,0,0,0,0.0499202544457975,0.536430485257814,0,0,-0.121779851751874,-0.181349618560659,0,0,0.625563109169051,0,-0.200304718560463,0.153383451997705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.62538433387641,-0.104089900591694,0,0,0,0,-0.389198712096949,0,-0.00253844118122448,0.474058669385826,-0.0467332803975863,-0.053867980145592,0.308720174776242,0,-0.0794910309226387,0.0147226258371654,-0.095369280383763,-0.311894768734965,0.222074083571263,0.376196820451888,0,-0.0274494029969004,-0.147433651509065,0,-0.0626322506845514,-0.0300629600808565,0.262489033824202,-0.110365849997174,0.222898696087275,0,0.123566061367576,-0.198965247235694,0,-0.0276520996746632,-0.120638781534372,-0.175616394140403,0.18690256512889,0.013284001527422,0.200839238359599,-0.0145447878439739,0.183366167630604,-0.457436452896595,0,0.719202332264518,0,0,-0.0456116790602311,-0.104329086999913,-0.0304255457217312,-0.0496476331769439,0,-0.261078765723706,-0.0683442610773682,0,-0.17547318205674,0.0302862780166888,0,0,-0.0999074729100676,0,0,-0.166369593087492,0,0,-0.00165578958036283,-0.539492143030166,-0.232855561555545,0,-0.049206743881807,-0.0444828771447934,-0.0141968103517189,0,-0.205105695793179,-0.202170761610805,-0.0751754562740178,-0.0435597229160434,0,-0.0528311914629985,-0.130483328946378,0.0579079997482717,-0.0529188724493356,-0.0584468268118252,-0.251602175814387,-0.00731328669306208,0.139767238347573,0.014899949490324,0,0.134771863611987,0,-0.317366210516645,-0.113319591619789,-0.0400882594615106,-0.089716629222436,0,-0.0625864490167898,0,-0.366789786887225,0.0651413056192405,0.213522606311923,0.098405226131707,-0.439289374580686,-0.117912030816996,0,-0.205750700487109,0.16844134845453,0,0,0,0,0.0725316127526352,0.00337139854468105,-0.211650427864589,-0.0275401086355574,0,0.226527532331029,0,0,-0.21806303261966,-0.235476037764389,0,0.057192357147359,-0.239726981270994,-0.0380375011935593,0.10692762265234,0,0,0.0553670270645389,0,0.638838977604947,-0.236452130875628,0.0784471120300099,-0.396884627871359,-0.253326341486756,-0.0080513234380216,-0.108622809454255,0,0,0.0453709301220989,0,-0.00278550915695752,0,0,-0.0651433301276225,0.106270583097142,0,0.184737966471201,0,0.105074698253452,0,-0.0149445063259093,0,0,0,0,0,-0.090754769533413,0.284005647388499,0,0,0,0,0,0.369475932942402,0,0.00436189420025168,0,0,0.227594472657742,0.0825120148668844,0.0998812804108543,0,0,0,0,-0.215723402553475,-0.203236562094724,0.222898696087275,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.066651698700939,0,0,0,0.52688541267876,0,0,0,0,-0.318519053285845,0,0,0.324642112842125,0,0.0415932084491635,0.28789405339556,0,-0.002581490014664,0.353291735574456,-0.293012649927776,0,0,0.37749184581506,0,0,-0.149058478198897,0,0.222898696087275,-0.0209247759461169,0,0,0,0,0,0,0.0085841836875189,0,0,0,0,0,0,0,0,0,0,0,-0.249821893418036,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.0985985699654178,0,0,0,0,0,0,0,0,-0.248527243575968,0,0,0,0,0,0.381877396718739,0,0,0,0,0.684819728307872,0,0,-0.0544634361062395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0995796100518268,-0.11700472786963,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.109014322378297,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283089270000867,0,0,0,0.382295676118504,0,0.222898696087275,-0.0611029931777465,0,0,0.086791136169432,0,0,0,0,0,0,0.08010892401511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222898696087275,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.468220643733678,0,0,-0.0920328098005262,0,0,0,0,0.0450623669535564,0,0.23454730832483,0.350402552706353,-0.0717596529682767,0,0,0,0.0570637755611825,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325546747612917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289457464673763,0,0,0,0.00981246643023084,0,0,0,0,0,0,0,0,0.222898696087275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222898696087275,0,0,0,-0.18253017086312,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321253857703348,0,0.138522063857247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.181028109573311,0,0,0,0,0.321838822281483,0,0,0,0,0,0,1.09348873697879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0307119122012305,0,0,0.195340776460958,0,0,0.0686762084647565,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.06934294817186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0346612496619162,-0.0284393673948361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC6205 | |rna_catalog_number=SC6205 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.41034485225487e-230!GO:0005737;cytoplasm;1.73392783204449e-203!GO:0043231;intracellular membrane-bound organelle;1.20409388299889e-179!GO:0043227;membrane-bound organelle;2.48411243912056e-179!GO:0043226;organelle;2.64849486486117e-178!GO:0043229;intracellular organelle;5.70574609386679e-178!GO:0044444;cytoplasmic part;1.13114808879196e-152!GO:0044422;organelle part;4.1406060930819e-135!GO:0044446;intracellular organelle part;1.08428585608502e-133!GO:0032991;macromolecular complex;1.16000073738014e-89!GO:0044237;cellular metabolic process;1.6359789280518e-88!GO:0044238;primary metabolic process;1.00944990117524e-86!GO:0030529;ribonucleoprotein complex;5.2304709024607e-86!GO:0005739;mitochondrion;6.60617373118517e-78!GO:0005515;protein binding;3.7617942778397e-75!GO:0043170;macromolecule metabolic process;5.03448191688291e-74!GO:0043233;organelle lumen;5.96509193523948e-69!GO:0031974;membrane-enclosed lumen;5.96509193523948e-69!GO:0003723;RNA binding;7.85103622704545e-63!GO:0044428;nuclear part;3.34676581363755e-60!GO:0005840;ribosome;1.12147216013814e-56!GO:0005634;nucleus;2.71577931280975e-56!GO:0031090;organelle membrane;3.1728080423645e-54!GO:0019538;protein metabolic process;4.12982284137939e-53!GO:0006412;translation;7.18018749499993e-52!GO:0044429;mitochondrial part;2.7921332826491e-50!GO:0009058;biosynthetic process;1.69849976674896e-49!GO:0003735;structural constituent of ribosome;2.23073927965315e-49!GO:0044260;cellular macromolecule metabolic process;3.27688083089637e-48!GO:0044267;cellular protein metabolic process;3.1515374953419e-47!GO:0044249;cellular biosynthetic process;3.35914369044988e-45!GO:0005829;cytosol;1.77514803144068e-43!GO:0033279;ribosomal subunit;2.33191791552265e-43!GO:0043234;protein complex;3.98757245840523e-43!GO:0009059;macromolecule biosynthetic process;9.43637594342805e-43!GO:0016043;cellular component organization and biogenesis;1.35196284674239e-42!GO:0006396;RNA processing;8.38744281171205e-42!GO:0031967;organelle envelope;3.09334100092549e-41!GO:0031975;envelope;7.4498800859153e-41!GO:0033036;macromolecule localization;2.1628287108793e-39!GO:0015031;protein transport;9.76994960767667e-39!GO:0008104;protein localization;1.51992370821282e-36!GO:0045184;establishment of protein localization;3.04181793221609e-36!GO:0031981;nuclear lumen;1.41563444037485e-35!GO:0016071;mRNA metabolic process;5.16619990421525e-34!GO:0043283;biopolymer metabolic process;3.46563196816621e-33!GO:0010467;gene expression;1.02329342090628e-32!GO:0005740;mitochondrial envelope;8.9179939381001e-32!GO:0008380;RNA splicing;9.58751517212395e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.01427495391178e-30!GO:0046907;intracellular transport;2.6885607812725e-30!GO:0065003;macromolecular complex assembly;4.18358512694634e-30!GO:0031966;mitochondrial membrane;1.041340563155e-29!GO:0019866;organelle inner membrane;5.03793401850839e-29!GO:0006397;mRNA processing;5.33979082363813e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.04743951306243e-27!GO:0006886;intracellular protein transport;1.49922761898472e-27!GO:0005743;mitochondrial inner membrane;2.45321650493365e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.10457297026294e-27!GO:0006996;organelle organization and biogenesis;4.28500145122116e-27!GO:0022607;cellular component assembly;1.70073622237062e-26!GO:0043228;non-membrane-bound organelle;3.19109109770618e-26!GO:0043232;intracellular non-membrane-bound organelle;3.19109109770618e-26!GO:0005783;endoplasmic reticulum;9.27732373854311e-25!GO:0006119;oxidative phosphorylation;3.00578847363048e-24!GO:0044445;cytosolic part;3.71848439054796e-24!GO:0031980;mitochondrial lumen;2.54458238205885e-23!GO:0005759;mitochondrial matrix;2.54458238205885e-23!GO:0012505;endomembrane system;4.79908358426443e-23!GO:0015935;small ribosomal subunit;2.95048647503354e-22!GO:0015934;large ribosomal subunit;3.48677248022346e-22!GO:0044455;mitochondrial membrane part;5.59270646804711e-22!GO:0005681;spliceosome;1.99521527347847e-21!GO:0005654;nucleoplasm;2.12446182105629e-21!GO:0044432;endoplasmic reticulum part;6.33616177167687e-21!GO:0006457;protein folding;1.47740596015973e-20!GO:0005746;mitochondrial respiratory chain;1.48031898864569e-19!GO:0006259;DNA metabolic process;1.82955689802009e-19!GO:0051649;establishment of cellular localization;5.72647704544356e-19!GO:0051641;cellular localization;1.04116966008541e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.10753581345185e-18!GO:0048770;pigment granule;1.0555176838631e-17!GO:0042470;melanosome;1.0555176838631e-17!GO:0000166;nucleotide binding;1.10198451204115e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.96324778475983e-17!GO:0003954;NADH dehydrogenase activity;1.96324778475983e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.96324778475983e-17!GO:0016462;pyrophosphatase activity;2.16339354495796e-17!GO:0051186;cofactor metabolic process;2.64877080257057e-17!GO:0007049;cell cycle;2.68584426980695e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.373754255656e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.17846832191762e-17!GO:0044451;nucleoplasm part;4.2538798197372e-17!GO:0022618;protein-RNA complex assembly;4.51326131571758e-17!GO:0005761;mitochondrial ribosome;7.95688607760424e-17!GO:0000313;organellar ribosome;7.95688607760424e-17!GO:0005794;Golgi apparatus;9.97444073978756e-17!GO:0017111;nucleoside-triphosphatase activity;1.23783045261565e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.50356223931506e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.00900948647527e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.74238875092682e-15!GO:0008134;transcription factor binding;2.36938373919686e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.37454220228047e-15!GO:0005730;nucleolus;2.56083390555806e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.59720867203968e-15!GO:0045271;respiratory chain complex I;2.59720867203968e-15!GO:0005747;mitochondrial respiratory chain complex I;2.59720867203968e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.59720867203968e-15!GO:0042773;ATP synthesis coupled electron transport;2.59720867203968e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.01393850852233e-15!GO:0006605;protein targeting;5.03967407280514e-15!GO:0005789;endoplasmic reticulum membrane;6.06859294403812e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.6757754710558e-15!GO:0016874;ligase activity;1.2110311481602e-14!GO:0008135;translation factor activity, nucleic acid binding;2.01583536685577e-14!GO:0003676;nucleic acid binding;4.20932458140311e-14!GO:0044265;cellular macromolecule catabolic process;6.68802765797698e-14!GO:0044248;cellular catabolic process;6.94513720132131e-14!GO:0022402;cell cycle process;1.53279052596117e-13!GO:0006732;coenzyme metabolic process;1.87524133835222e-13!GO:0043285;biopolymer catabolic process;1.96853235443477e-13!GO:0051082;unfolded protein binding;2.78876575132344e-13!GO:0009055;electron carrier activity;5.41766553016842e-13!GO:0009057;macromolecule catabolic process;5.59017827206081e-13!GO:0016491;oxidoreductase activity;1.1146167599543e-12!GO:0006512;ubiquitin cycle;1.2271271819746e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.29860191535654e-12!GO:0000375;RNA splicing, via transesterification reactions;2.29860191535654e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.29860191535654e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.43125581370528e-12!GO:0017076;purine nucleotide binding;2.80500818632762e-12!GO:0048193;Golgi vesicle transport;3.11186307602705e-12!GO:0012501;programmed cell death;4.21383180939536e-12!GO:0019941;modification-dependent protein catabolic process;4.61839153634942e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.61839153634942e-12!GO:0000278;mitotic cell cycle;4.75059204736935e-12!GO:0048523;negative regulation of cellular process;4.81831579127724e-12!GO:0044257;cellular protein catabolic process;6.17387512465569e-12!GO:0006511;ubiquitin-dependent protein catabolic process;7.58892186122175e-12!GO:0032553;ribonucleotide binding;8.25336087107492e-12!GO:0032555;purine ribonucleotide binding;8.25336087107492e-12!GO:0016192;vesicle-mediated transport;8.77688048032723e-12!GO:0005793;ER-Golgi intermediate compartment;1.20372037577444e-11!GO:0006915;apoptosis;1.32819399264145e-11!GO:0016070;RNA metabolic process;2.55092614333123e-11!GO:0008219;cell death;3.01415921119166e-11!GO:0016265;death;3.01415921119166e-11!GO:0003743;translation initiation factor activity;3.01415921119166e-11!GO:0006413;translational initiation;3.62010238261464e-11!GO:0030163;protein catabolic process;4.69352518574053e-11!GO:0042254;ribosome biogenesis and assembly;7.36307352937204e-11!GO:0043412;biopolymer modification;9.10533029868554e-11!GO:0005635;nuclear envelope;1.18742817511519e-10!GO:0048519;negative regulation of biological process;4.36377121847074e-10!GO:0003712;transcription cofactor activity;5.04623505449402e-10!GO:0006913;nucleocytoplasmic transport;5.22961032941249e-10!GO:0006446;regulation of translational initiation;5.95520926783217e-10!GO:0009259;ribonucleotide metabolic process;6.49556131251518e-10!GO:0006163;purine nucleotide metabolic process;6.64649150610466e-10!GO:0000074;regulation of progression through cell cycle;8.90640553910715e-10!GO:0009150;purine ribonucleotide metabolic process;8.98170844128992e-10!GO:0006464;protein modification process;9.07585771856244e-10!GO:0051276;chromosome organization and biogenesis;9.83512140530829e-10!GO:0051726;regulation of cell cycle;1.07566030008772e-09!GO:0051169;nuclear transport;1.17810903137936e-09!GO:0008565;protein transporter activity;1.19226945431101e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.50835528932417e-09!GO:0006974;response to DNA damage stimulus;1.75700952216161e-09!GO:0030554;adenyl nucleotide binding;1.84291425045861e-09!GO:0006164;purine nucleotide biosynthetic process;2.88982322075212e-09!GO:0016604;nuclear body;3.03447377777639e-09!GO:0005694;chromosome;3.03447377777639e-09!GO:0005524;ATP binding;3.50511519776068e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.69392793238555e-09!GO:0065004;protein-DNA complex assembly;3.91472025015474e-09!GO:0032559;adenyl ribonucleotide binding;3.97818779532498e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.299689577972e-09!GO:0009060;aerobic respiration;4.46198578965523e-09!GO:0016887;ATPase activity;5.51409799625402e-09!GO:0006366;transcription from RNA polymerase II promoter;6.17353042507047e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.21625817659438e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.39788316551924e-09!GO:0009056;catabolic process;8.1234335637475e-09!GO:0009260;ribonucleotide biosynthetic process;8.83826619738398e-09!GO:0031965;nuclear membrane;9.16248854465358e-09!GO:0044427;chromosomal part;9.40477657022446e-09!GO:0042623;ATPase activity, coupled;1.11978558051362e-08!GO:0017038;protein import;1.12778840321277e-08!GO:0044453;nuclear membrane part;1.22754576853408e-08!GO:0051188;cofactor biosynthetic process;1.24174650951835e-08!GO:0006399;tRNA metabolic process;1.3723865440931e-08!GO:0045333;cellular respiration;1.73225660499038e-08!GO:0009141;nucleoside triphosphate metabolic process;1.86896087444439e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.9011167058992e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.9011167058992e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.94899255877164e-08!GO:0006323;DNA packaging;1.98432483366996e-08!GO:0015986;ATP synthesis coupled proton transport;2.51103687538652e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.51103687538652e-08!GO:0005788;endoplasmic reticulum lumen;3.8115416931031e-08!GO:0006091;generation of precursor metabolites and energy;3.91019253819474e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.16458980356497e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.16458980356497e-08!GO:0000087;M phase of mitotic cell cycle;4.29953440054636e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.36980849314627e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.36980849314627e-08!GO:0006461;protein complex assembly;5.31133545598046e-08!GO:0007067;mitosis;5.36622189944219e-08!GO:0016853;isomerase activity;6.45294399786517e-08!GO:0019829;cation-transporting ATPase activity;7.35020844841417e-08!GO:0043687;post-translational protein modification;9.90405269488385e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.10746417044546e-07!GO:0043067;regulation of programmed cell death;1.21158060815423e-07!GO:0022403;cell cycle phase;1.24301417432104e-07!GO:0048475;coated membrane;1.31620674191553e-07!GO:0030117;membrane coat;1.31620674191553e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.33598901948578e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.33598901948578e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.33598901948578e-07!GO:0006099;tricarboxylic acid cycle;1.33598901948578e-07!GO:0046356;acetyl-CoA catabolic process;1.33598901948578e-07!GO:0006333;chromatin assembly or disassembly;1.33958669342134e-07!GO:0042981;regulation of apoptosis;1.35634597231252e-07!GO:0009719;response to endogenous stimulus;1.38101068102562e-07!GO:0009117;nucleotide metabolic process;1.54464885504935e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.55310989688672e-07!GO:0051301;cell division;1.82298956523865e-07!GO:0008639;small protein conjugating enzyme activity;1.86881215625182e-07!GO:0006364;rRNA processing;2.16360592407551e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.16502889843868e-07!GO:0046034;ATP metabolic process;2.40046684750863e-07!GO:0051187;cofactor catabolic process;2.66270746664516e-07!GO:0006084;acetyl-CoA metabolic process;2.83910782262274e-07!GO:0043038;amino acid activation;3.00492275760239e-07!GO:0006418;tRNA aminoacylation for protein translation;3.00492275760239e-07!GO:0043039;tRNA aminoacylation;3.00492275760239e-07!GO:0030120;vesicle coat;3.07140515528146e-07!GO:0030662;coated vesicle membrane;3.07140515528146e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.19830699884446e-07!GO:0016607;nuclear speck;3.41931753174554e-07!GO:0016072;rRNA metabolic process;3.46522890376214e-07!GO:0065002;intracellular protein transport across a membrane;3.5513453194902e-07!GO:0004842;ubiquitin-protein ligase activity;3.58715939549394e-07!GO:0006281;DNA repair;3.95117414363647e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.14807678500857e-07!GO:0006754;ATP biosynthetic process;4.39760349248133e-07!GO:0006753;nucleoside phosphate metabolic process;4.39760349248133e-07!GO:0000785;chromatin;4.40491352909821e-07!GO:0003924;GTPase activity;4.59928135525585e-07!GO:0045786;negative regulation of progression through cell cycle;5.02643993234219e-07!GO:0051246;regulation of protein metabolic process;5.66796753237253e-07!GO:0009109;coenzyme catabolic process;5.75820978061043e-07!GO:0043069;negative regulation of programmed cell death;6.51811035425564e-07!GO:0016787;hydrolase activity;8.23788170890646e-07!GO:0044431;Golgi apparatus part;8.94203277772014e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.55111465018212e-07!GO:0006334;nucleosome assembly;1.0103509653704e-06!GO:0050794;regulation of cellular process;1.08573851642501e-06!GO:0004298;threonine endopeptidase activity;1.09272189098104e-06!GO:0019787;small conjugating protein ligase activity;1.29606664308685e-06!GO:0009108;coenzyme biosynthetic process;1.30272373148138e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.35081059038319e-06!GO:0005762;mitochondrial large ribosomal subunit;1.45073484644684e-06!GO:0000315;organellar large ribosomal subunit;1.45073484644684e-06!GO:0005643;nuclear pore;1.4564415289063e-06!GO:0043066;negative regulation of apoptosis;1.62385468578826e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.65146459112705e-06!GO:0005773;vacuole;1.7544835929123e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.82430278019117e-06!GO:0031988;membrane-bound vesicle;1.82683503920932e-06!GO:0046930;pore complex;1.99263909621396e-06!GO:0006260;DNA replication;2.32070390841729e-06!GO:0004386;helicase activity;2.34025853515017e-06!GO:0031252;leading edge;2.39544417154077e-06!GO:0045259;proton-transporting ATP synthase complex;2.68787546225136e-06!GO:0031497;chromatin assembly;2.90676984188556e-06!GO:0016859;cis-trans isomerase activity;3.01509233491676e-06!GO:0008026;ATP-dependent helicase activity;3.81855586593e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.85772236241206e-06!GO:0051170;nuclear import;4.14347451104248e-06!GO:0005768;endosome;5.00765173015788e-06!GO:0016740;transferase activity;5.2815466640588e-06!GO:0031324;negative regulation of cellular metabolic process;5.44939597632424e-06!GO:0005667;transcription factor complex;5.47398914165476e-06!GO:0006916;anti-apoptosis;6.34625465801359e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.84737552415248e-06!GO:0031982;vesicle;8.09435528555896e-06!GO:0008654;phospholipid biosynthetic process;8.13398266228671e-06!GO:0031410;cytoplasmic vesicle;8.74700011335765e-06!GO:0043566;structure-specific DNA binding;8.8772138692471e-06!GO:0016563;transcription activator activity;9.11069592645293e-06!GO:0007005;mitochondrion organization and biogenesis;9.11525054904743e-06!GO:0003714;transcription corepressor activity;9.18263337165184e-06!GO:0000245;spliceosome assembly;9.3544092205473e-06!GO:0006606;protein import into nucleus;9.62947628006179e-06!GO:0006752;group transfer coenzyme metabolic process;9.67380835667706e-06!GO:0016881;acid-amino acid ligase activity;1.26952836709885e-05!GO:0003697;single-stranded DNA binding;1.29204706871609e-05!GO:0006793;phosphorus metabolic process;1.29846074396216e-05!GO:0006796;phosphate metabolic process;1.29846074396216e-05!GO:0006403;RNA localization;1.30511981616342e-05!GO:0045454;cell redox homeostasis;1.34800035674814e-05!GO:0050657;nucleic acid transport;1.52657054617192e-05!GO:0051236;establishment of RNA localization;1.52657054617192e-05!GO:0050658;RNA transport;1.52657054617192e-05!GO:0000279;M phase;1.57297043573744e-05!GO:0016310;phosphorylation;1.64379759234115e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.64379759234115e-05!GO:0000323;lytic vacuole;1.64379759234115e-05!GO:0005764;lysosome;1.64379759234115e-05!GO:0006613;cotranslational protein targeting to membrane;1.80158663599279e-05!GO:0048522;positive regulation of cellular process;1.84243841373067e-05!GO:0016049;cell growth;2.06034328017875e-05!GO:0008361;regulation of cell size;2.0862904068042e-05!GO:0019843;rRNA binding;2.22857167932211e-05!GO:0030867;rough endoplasmic reticulum membrane;3.44156996871506e-05!GO:0003713;transcription coactivator activity;3.4691006621592e-05!GO:0000314;organellar small ribosomal subunit;3.52534643035433e-05!GO:0005763;mitochondrial small ribosomal subunit;3.52534643035433e-05!GO:0032446;protein modification by small protein conjugation;3.66266527540704e-05!GO:0016564;transcription repressor activity;3.66266527540704e-05!GO:0000151;ubiquitin ligase complex;3.8546467977552e-05!GO:0000139;Golgi membrane;3.9144724984381e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.18750015229463e-05!GO:0031968;organelle outer membrane;4.41066420670373e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.52319635197765e-05!GO:0016567;protein ubiquitination;4.80252268745835e-05!GO:0005770;late endosome;4.88931531278475e-05!GO:0005525;GTP binding;5.25934420344014e-05!GO:0015630;microtubule cytoskeleton;5.31279947435795e-05!GO:0008610;lipid biosynthetic process;5.61687719675004e-05!GO:0019867;outer membrane;5.77325406908212e-05!GO:0001558;regulation of cell growth;6.24434695878945e-05!GO:0016568;chromatin modification;6.86170995812282e-05!GO:0009892;negative regulation of metabolic process;6.96036346209174e-05!GO:0005798;Golgi-associated vesicle;7.89172108840725e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.02771573962931e-05!GO:0043021;ribonucleoprotein binding;8.62035926180859e-05!GO:0006612;protein targeting to membrane;9.30424960197065e-05!GO:0003724;RNA helicase activity;9.94760662892526e-05!GO:0043623;cellular protein complex assembly;0.000108516094462969!GO:0009165;nucleotide biosynthetic process;0.00011622045907354!GO:0044262;cellular carbohydrate metabolic process;0.000123998961082039!GO:0050789;regulation of biological process;0.000137020607919499!GO:0005741;mitochondrial outer membrane;0.000148116400964307!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000149250015965798!GO:0005791;rough endoplasmic reticulum;0.000156334639324629!GO:0044440;endosomal part;0.000177099418812466!GO:0010008;endosome membrane;0.000177099418812466!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000190034183561997!GO:0006082;organic acid metabolic process;0.000199701186962416!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000202710780554191!GO:0016126;sterol biosynthetic process;0.000207185030060043!GO:0006118;electron transport;0.000224585267956234!GO:0019752;carboxylic acid metabolic process;0.000224851784250326!GO:0032561;guanyl ribonucleotide binding;0.000233423091482265!GO:0019001;guanyl nucleotide binding;0.000233423091482265!GO:0051028;mRNA transport;0.000243854273046332!GO:0016779;nucleotidyltransferase activity;0.000262209218665237!GO:0050662;coenzyme binding;0.000263040166650595!GO:0033116;ER-Golgi intermediate compartment membrane;0.000271974460446!GO:0007243;protein kinase cascade;0.0002901624023386!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000295502959013874!GO:0051427;hormone receptor binding;0.000295502959013874!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000302796241143742!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000342692726481365!GO:0016481;negative regulation of transcription;0.000369487440800809!GO:0051789;response to protein stimulus;0.000390047440509112!GO:0006986;response to unfolded protein;0.000390047440509112!GO:0008250;oligosaccharyl transferase complex;0.000393480291443891!GO:0046474;glycerophospholipid biosynthetic process;0.000400971730954276!GO:0030176;integral to endoplasmic reticulum membrane;0.000424185532274438!GO:0051329;interphase of mitotic cell cycle;0.000424959372008169!GO:0005885;Arp2/3 protein complex;0.00048072264937326!GO:0004576;oligosaccharyl transferase activity;0.000483694074133364!GO:0005813;centrosome;0.000488723303171532!GO:0030133;transport vesicle;0.000539414983361069!GO:0048518;positive regulation of biological process;0.00055114224116326!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000559450421182229!GO:0035257;nuclear hormone receptor binding;0.000582051180162015!GO:0030029;actin filament-based process;0.000583544916733023!GO:0043681;protein import into mitochondrion;0.000609966605349959!GO:0005048;signal sequence binding;0.000618207654449399!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000628591573065426!GO:0000786;nucleosome;0.000639957058072802!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000649535241028084!GO:0019899;enzyme binding;0.000685108360289846!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000694541456627346!GO:0005905;coated pit;0.000713426351180783!GO:0051920;peroxiredoxin activity;0.000743367902612494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00076760508796582!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000860751200925621!GO:0015399;primary active transmembrane transporter activity;0.000860751200925621!GO:0051325;interphase;0.000921759085439189!GO:0018196;peptidyl-asparagine modification;0.000944549272414866!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000944549272414866!GO:0016044;membrane organization and biogenesis;0.000955147011590503!GO:0005815;microtubule organizing center;0.000974001615798928!GO:0030663;COPI coated vesicle membrane;0.00100112737988058!GO:0030126;COPI vesicle coat;0.00100112737988058!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00100691085744465!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00100691085744465!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00100691085744465!GO:0030027;lamellipodium;0.00101816364030031!GO:0006414;translational elongation;0.00111549340404316!GO:0008186;RNA-dependent ATPase activity;0.00118627503096579!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00135009819517131!GO:0003899;DNA-directed RNA polymerase activity;0.00136888246115542!GO:0007050;cell cycle arrest;0.00145413164994684!GO:0006979;response to oxidative stress;0.00162472064913367!GO:0046467;membrane lipid biosynthetic process;0.00162718647283726!GO:0007010;cytoskeleton organization and biogenesis;0.00174869105261088!GO:0030118;clathrin coat;0.00179667160988122!GO:0030137;COPI-coated vesicle;0.00182137702284423!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00183845700914315!GO:0015002;heme-copper terminal oxidase activity;0.00183845700914315!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00183845700914315!GO:0004129;cytochrome-c oxidase activity;0.00183845700914315!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00186725866562529!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00186725866562529!GO:0006695;cholesterol biosynthetic process;0.00189985948767649!GO:0003729;mRNA binding;0.00191495073402383!GO:0051087;chaperone binding;0.00191784510438666!GO:0051287;NAD binding;0.00191784510438666!GO:0005819;spindle;0.00194487985448585!GO:0044255;cellular lipid metabolic process;0.00196071552629407!GO:0043488;regulation of mRNA stability;0.00201167086961711!GO:0043487;regulation of RNA stability;0.00201167086961711!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0020255048035729!GO:0051252;regulation of RNA metabolic process;0.00206665332554698!GO:0048037;cofactor binding;0.00215000674905905!GO:0006950;response to stress;0.00221724661329556!GO:0008632;apoptotic program;0.00222148607734419!GO:0005769;early endosome;0.00224596183587183!GO:0031072;heat shock protein binding;0.00237979258998466!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00255317715172609!GO:0007006;mitochondrial membrane organization and biogenesis;0.00261779247594702!GO:0030659;cytoplasmic vesicle membrane;0.00277253944168077!GO:0046489;phosphoinositide biosynthetic process;0.00277446554280977!GO:0006626;protein targeting to mitochondrion;0.00280166405829137!GO:0007040;lysosome organization and biogenesis;0.0029225225756031!GO:0004004;ATP-dependent RNA helicase activity;0.00303100800651275!GO:0051101;regulation of DNA binding;0.00313102375323353!GO:0043284;biopolymer biosynthetic process;0.00315857645275583!GO:0003690;double-stranded DNA binding;0.00323616215302229!GO:0040008;regulation of growth;0.00331578079116322!GO:0006509;membrane protein ectodomain proteolysis;0.0033958978565024!GO:0033619;membrane protein proteolysis;0.0033958978565024!GO:0048500;signal recognition particle;0.00366804431313472!GO:0016363;nuclear matrix;0.0037732589904051!GO:0007051;spindle organization and biogenesis;0.00394291824410649!GO:0016860;intramolecular oxidoreductase activity;0.00402627387876038!GO:0004177;aminopeptidase activity;0.00426840136279809!GO:0022890;inorganic cation transmembrane transporter activity;0.00442930111200633!GO:0006740;NADPH regeneration;0.00448564768148623!GO:0006098;pentose-phosphate shunt;0.00448564768148623!GO:0031301;integral to organelle membrane;0.00449276565819536!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00455962462879576!GO:0008180;signalosome;0.00470991879172266!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00472386222677898!GO:0046483;heterocycle metabolic process;0.00480993640465388!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00483653215728551!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00483653215728551!GO:0051539;4 iron, 4 sulfur cluster binding;0.00491862482757729!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00498418060127767!GO:0030658;transport vesicle membrane;0.00500899566892787!GO:0051168;nuclear export;0.00504247557087835!GO:0006402;mRNA catabolic process;0.00514193393407423!GO:0006352;transcription initiation;0.00517375461602715!GO:0015992;proton transport;0.00540707419681495!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00541674837989693!GO:0030119;AP-type membrane coat adaptor complex;0.00542569164845462!GO:0042802;identical protein binding;0.00542569164845462!GO:0003746;translation elongation factor activity;0.00547264994597734!GO:0045941;positive regulation of transcription;0.00549255116856272!GO:0065009;regulation of a molecular function;0.00557328643787824!GO:0043492;ATPase activity, coupled to movement of substances;0.00590041437784529!GO:0005684;U2-dependent spliceosome;0.00592965407915859!GO:0006818;hydrogen transport;0.00597495285922152!GO:0006778;porphyrin metabolic process;0.00599684195038801!GO:0033013;tetrapyrrole metabolic process;0.00599684195038801!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00629097439190098!GO:0006790;sulfur metabolic process;0.00666700736270666!GO:0008139;nuclear localization sequence binding;0.006688175203692!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00683833819010904!GO:0017166;vinculin binding;0.0069801428178859!GO:0008033;tRNA processing;0.00702287419019244!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00734517438736989!GO:0006383;transcription from RNA polymerase III promoter;0.00745828053697319!GO:0035258;steroid hormone receptor binding;0.00746393874633469!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00746393874633469!GO:0006643;membrane lipid metabolic process;0.00754100387926561!GO:0006650;glycerophospholipid metabolic process;0.00773436634392726!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00780260965215006!GO:0045047;protein targeting to ER;0.00780260965215006!GO:0007033;vacuole organization and biogenesis;0.00787788890705307!GO:0016408;C-acyltransferase activity;0.00796732171487721!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00796732171487721!GO:0048468;cell development;0.00797398502361071!GO:0045893;positive regulation of transcription, DNA-dependent;0.00835303792466605!GO:0006520;amino acid metabolic process;0.00852417334966003!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00862071317773443!GO:0030132;clathrin coat of coated pit;0.0086245593137343!GO:0048487;beta-tubulin binding;0.00874416070301018!GO:0003711;transcription elongation regulator activity;0.00877516550349007!GO:0030131;clathrin adaptor complex;0.00879174897064408!GO:0005774;vacuolar membrane;0.00887159238494029!GO:0030134;ER to Golgi transport vesicle;0.00887874537611658!GO:0015631;tubulin binding;0.00889258195715155!GO:0008312;7S RNA binding;0.00902070993559916!GO:0001726;ruffle;0.00902605661886172!GO:0044433;cytoplasmic vesicle part;0.0098852661407838!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0100705014940238!GO:0045792;negative regulation of cell size;0.0101162069961394!GO:0000096;sulfur amino acid metabolic process;0.0101162069961394!GO:0016272;prefoldin complex;0.0101952165055683!GO:0031272;regulation of pseudopodium formation;0.0103983265901857!GO:0031269;pseudopodium formation;0.0103983265901857!GO:0031344;regulation of cell projection organization and biogenesis;0.0103983265901857!GO:0031268;pseudopodium organization and biogenesis;0.0103983265901857!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0103983265901857!GO:0031274;positive regulation of pseudopodium formation;0.0103983265901857!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0107509690491647!GO:0005869;dynactin complex;0.0107847428931934!GO:0009967;positive regulation of signal transduction;0.0108760316545733!GO:0030308;negative regulation of cell growth;0.0109808488699794!GO:0000059;protein import into nucleus, docking;0.0111428662087646!GO:0006401;RNA catabolic process;0.0112106899135109!GO:0030127;COPII vesicle coat;0.0112106899135109!GO:0012507;ER to Golgi transport vesicle membrane;0.0112106899135109!GO:0065007;biological regulation;0.0120446336805604!GO:0006839;mitochondrial transport;0.0120463470171511!GO:0006891;intra-Golgi vesicle-mediated transport;0.0122894652782411!GO:0006595;polyamine metabolic process;0.0123187002580829!GO:0022415;viral reproductive process;0.0124184012266508!GO:0030660;Golgi-associated vesicle membrane;0.0126445603060109!GO:0006807;nitrogen compound metabolic process;0.0129737889580969!GO:0031902;late endosome membrane;0.0132399826644571!GO:0030041;actin filament polymerization;0.013514821448774!GO:0030521;androgen receptor signaling pathway;0.013559712985741!GO:0043022;ribosome binding;0.0135872932175908!GO:0043065;positive regulation of apoptosis;0.0135872932175908!GO:0045892;negative regulation of transcription, DNA-dependent;0.0136939971531212!GO:0015036;disulfide oxidoreductase activity;0.0139250891652402!GO:0005637;nuclear inner membrane;0.0143324934330348!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0145140828298201!GO:0030384;phosphoinositide metabolic process;0.0147089933969522!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0149652181268328!GO:0008168;methyltransferase activity;0.0152234623341308!GO:0030569;chymotrypsin inhibitor activity;0.0153463992382142!GO:0006739;NADP metabolic process;0.0154967969352578!GO:0044452;nucleolar part;0.0159505467441488!GO:0043068;positive regulation of programmed cell death;0.0160629989801111!GO:0006779;porphyrin biosynthetic process;0.0160629989801111!GO:0033014;tetrapyrrole biosynthetic process;0.0160629989801111!GO:0009081;branched chain family amino acid metabolic process;0.0161195429464062!GO:0006417;regulation of translation;0.0164713792695826!GO:0042168;heme metabolic process;0.0164713792695826!GO:0015248;sterol transporter activity;0.0168696086335382!GO:0006635;fatty acid beta-oxidation;0.0171450358157758!GO:0016125;sterol metabolic process;0.0173262323738581!GO:0006629;lipid metabolic process;0.0173987024298675!GO:0005832;chaperonin-containing T-complex;0.0174734377680575!GO:0030518;steroid hormone receptor signaling pathway;0.0175864089385469!GO:0016741;transferase activity, transferring one-carbon groups;0.0176672624856587!GO:0030031;cell projection biogenesis;0.0180039849826241!GO:0044438;microbody part;0.0180594798769498!GO:0044439;peroxisomal part;0.0180594798769498!GO:0008629;induction of apoptosis by intracellular signals;0.0180612252005622!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0180612252005622!GO:0051540;metal cluster binding;0.0182341338042799!GO:0051536;iron-sulfur cluster binding;0.0182341338042799!GO:0031529;ruffle organization and biogenesis;0.0186663917691712!GO:0012506;vesicle membrane;0.0188474998750053!GO:0046822;regulation of nucleocytoplasmic transport;0.0189399254139886!GO:0043407;negative regulation of MAP kinase activity;0.0191360976198985!GO:0030145;manganese ion binding;0.0193505425816786!GO:0044437;vacuolar part;0.0194930580371886!GO:0051098;regulation of binding;0.0199299860387236!GO:0000339;RNA cap binding;0.0205557535644934!GO:0016584;nucleosome positioning;0.0206786829360477!GO:0006261;DNA-dependent DNA replication;0.0206786829360477!GO:0046519;sphingoid metabolic process;0.0207476331289842!GO:0019222;regulation of metabolic process;0.0207929695156407!GO:0009116;nucleoside metabolic process;0.0209422427445949!GO:0005765;lysosomal membrane;0.0212929936812396!GO:0003684;damaged DNA binding;0.0219072663863782!GO:0033673;negative regulation of kinase activity;0.0221520902986001!GO:0006469;negative regulation of protein kinase activity;0.0221520902986001!GO:0031124;mRNA 3'-end processing;0.0223314070970929!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0226809772991637!GO:0000775;chromosome, pericentric region;0.0227182057259075!GO:0030880;RNA polymerase complex;0.0227182057259075!GO:0003682;chromatin binding;0.023050516294139!GO:0006733;oxidoreduction coenzyme metabolic process;0.0237254040250985!GO:0006066;alcohol metabolic process;0.0240357616084635!GO:0031903;microbody membrane;0.0243492145898793!GO:0005778;peroxisomal membrane;0.0243492145898793!GO:0031418;L-ascorbic acid binding;0.0245608792687666!GO:0006644;phospholipid metabolic process;0.0246632253504011!GO:0008147;structural constituent of bone;0.0247812198839331!GO:0007346;regulation of progression through mitotic cell cycle;0.0248931744790822!GO:0016197;endosome transport;0.0248931744790822!GO:0003756;protein disulfide isomerase activity;0.0252481211360435!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0252481211360435!GO:0031625;ubiquitin protein ligase binding;0.0254982035609907!GO:0009308;amine metabolic process;0.026017093554341!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0264259740878031!GO:0006720;isoprenoid metabolic process;0.0265465349442956!GO:0006302;double-strand break repair;0.026811569259468!GO:0030833;regulation of actin filament polymerization;0.026811569259468!GO:0005777;peroxisome;0.0274584054646204!GO:0042579;microbody;0.0274584054646204!GO:0001666;response to hypoxia;0.0275887648572134!GO:0031300;intrinsic to organelle membrane;0.0275887648572134!GO:0000082;G1/S transition of mitotic cell cycle;0.0277260011973643!GO:0006897;endocytosis;0.0279594176411806!GO:0010324;membrane invagination;0.0279594176411806!GO:0050178;phenylpyruvate tautomerase activity;0.0282014001471015!GO:0006672;ceramide metabolic process;0.0283231464476613!GO:0007021;tubulin folding;0.0290263911072955!GO:0051128;regulation of cellular component organization and biogenesis;0.0290263911072955!GO:0030032;lamellipodium biogenesis;0.0292372295514128!GO:0031543;peptidyl-proline dioxygenase activity;0.0292626383544477!GO:0005862;muscle thin filament tropomyosin;0.0293840042918303!GO:0006289;nucleotide-excision repair;0.0294630896150959!GO:0050681;androgen receptor binding;0.0299819830562738!GO:0003702;RNA polymerase II transcription factor activity;0.0301918825898224!GO:0047485;protein N-terminus binding;0.0304777140729914!GO:0051348;negative regulation of transferase activity;0.030903913122256!GO:0005586;collagen type III;0.0312848367395923!GO:0006506;GPI anchor biosynthetic process;0.0318890601324204!GO:0030125;clathrin vesicle coat;0.0318890601324204!GO:0030665;clathrin coated vesicle membrane;0.0318890601324204!GO:0032507;maintenance of cellular protein localization;0.0319508946542731!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.03201393880098!GO:0008154;actin polymerization and/or depolymerization;0.0321168125209668!GO:0006007;glucose catabolic process;0.0321168125209668!GO:0048144;fibroblast proliferation;0.0321991920614409!GO:0048145;regulation of fibroblast proliferation;0.0321991920614409!GO:0005758;mitochondrial intermembrane space;0.0328585296971832!GO:0008538;proteasome activator activity;0.0329822192256448!GO:0008047;enzyme activator activity;0.0329823692913785!GO:0006607;NLS-bearing substrate import into nucleus;0.0332916762366745!GO:0043433;negative regulation of transcription factor activity;0.0336670787590467!GO:0004448;isocitrate dehydrogenase activity;0.0337045704078223!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0340639333468024!GO:0005657;replication fork;0.0343475381988425!GO:0035035;histone acetyltransferase binding;0.0343882751154098!GO:0006693;prostaglandin metabolic process;0.03480442302232!GO:0006692;prostanoid metabolic process;0.03480442302232!GO:0007034;vacuolar transport;0.0349952964301329!GO:0007162;negative regulation of cell adhesion;0.0355754413366864!GO:0006505;GPI anchor metabolic process;0.035626730165094!GO:0000075;cell cycle checkpoint;0.0360244799063005!GO:0051235;maintenance of localization;0.0360444076617859!GO:0009112;nucleobase metabolic process;0.0363518188092823!GO:0048146;positive regulation of fibroblast proliferation;0.0363573040457217!GO:0000049;tRNA binding;0.036423896415087!GO:0048471;perinuclear region of cytoplasm;0.0364726180611233!GO:0022408;negative regulation of cell-cell adhesion;0.0364726180611233!GO:0030522;intracellular receptor-mediated signaling pathway;0.036731440037181!GO:0009303;rRNA transcription;0.0368825744591106!GO:0006354;RNA elongation;0.0368872179131987!GO:0051270;regulation of cell motility;0.0368872179131987!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0371369709835378!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0376252643602335!GO:0032906;transforming growth factor-beta2 production;0.0376252643602335!GO:0032909;regulation of transforming growth factor-beta2 production;0.0376252643602335!GO:0031970;organelle envelope lumen;0.038047278956407!GO:0006518;peptide metabolic process;0.0387762959195875!GO:0009889;regulation of biosynthetic process;0.0388300042280122!GO:0005784;translocon complex;0.03909443467722!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0398799090558175!GO:0030508;thiol-disulfide exchange intermediate activity;0.0399900001037914!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0410151954058747!GO:0006769;nicotinamide metabolic process;0.0410210793583318!GO:0017127;cholesterol transporter activity;0.0414842298884356!GO:0006338;chromatin remodeling;0.0415191799547835!GO:0031901;early endosome membrane;0.0416183014636493!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0416183014636493!GO:0010257;NADH dehydrogenase complex assembly;0.0416183014636493!GO:0033108;mitochondrial respiratory chain complex assembly;0.0416183014636493!GO:0045926;negative regulation of growth;0.0417626796305944!GO:0003678;DNA helicase activity;0.0419567863937938!GO:0008092;cytoskeletal protein binding;0.0420606571900181!GO:0006783;heme biosynthetic process;0.0425291986354308!GO:0030100;regulation of endocytosis;0.0427359352197981!GO:0016407;acetyltransferase activity;0.0428932471776398!GO:0045185;maintenance of protein localization;0.0433152211895633!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0436644521563987!GO:0000428;DNA-directed RNA polymerase complex;0.0436644521563987!GO:0019798;procollagen-proline dioxygenase activity;0.0445889167625797!GO:0016251;general RNA polymerase II transcription factor activity;0.0454521260486779!GO:0004518;nuclease activity;0.0460999283151139!GO:0005975;carbohydrate metabolic process;0.0463788314178689!GO:0030149;sphingolipid catabolic process;0.0464929483063532!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0464929483063532!GO:0000776;kinetochore;0.0468305642713146!GO:0008637;apoptotic mitochondrial changes;0.0472113440390288!GO:0004300;enoyl-CoA hydratase activity;0.047696955294554!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0477793964695534!GO:0006767;water-soluble vitamin metabolic process;0.0478098764630483!GO:0006405;RNA export from nucleus;0.048231888847207!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0485882059692312!GO:0042158;lipoprotein biosynthetic process;0.0486170961950261!GO:0006497;protein amino acid lipidation;0.0496999817057435!GO:0030433;ER-associated protein catabolic process;0.0496999817057435!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0496999817057435 | |||
|sample_id=11605 | |sample_id=11605 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=RXR{A,B,G}:2.23493134038;IKZF1:1.78430268538;GLI1..3:1.546699879;RXRA_VDR{dimer}:1.44698037016;NR1H4:1.36844524021;NR6A1:1.32922538232;HOX{A5,B5}:1.29585919961;TFAP4:1.12565044916;ZNF238:1.0483507953;EN1,2:1.04234675105;SMAD1..7,9:1.02637338162;NKX2-1,4:0.995234650863;AR:0.986181507388;UFEwm:0.973222684154;CRX:0.955894571712;EBF1:0.861792831391;CDC5L:0.851733036196;FOXP3:0.81820245924;TLX1..3_NFIC{dimer}:0.815445070353;GTF2A1,2:0.813917818847;MYBL2:0.807637186923;NKX2-2,8:0.766233273467;EVI1:0.754432004036;STAT5{A,B}:0.751840863959;TEF:0.73703563523;XBP1:0.723471604062;LHX3,4:0.702493460893;NANOG{mouse}:0.697481218055;NKX3-1:0.691864403864;PAX5:0.655859855701;SOX17:0.607084989418;SRF:0.601199251603;ZIC1..3:0.583298312945;TFCP2:0.5720629131;ALX4:0.554843320664;KLF4:0.549442833866;GZF1:0.547175856982;STAT2,4,6:0.543859560819;HSF1,2:0.542436842939;GFI1B:0.537750860166;NFATC1..3:0.527817800367;NR3C1:0.511225294162;ESR1:0.486432374052;PBX1:0.479643948527;TEAD1:0.463782263796;DBP:0.45015395973;PATZ1:0.449831488376;NR5A1,2:0.440266739956;ESRRA:0.438311109028;GFI1:0.435033943917;GATA6:0.431884911527;GTF2I:0.424618548612;ONECUT1,2:0.415547984111;ATF6:0.401183720092;TBP:0.389410668228;PAX8:0.373221871668;FOXD3:0.36668128164;HOX{A4,D4}:0.354391215476;T:0.315312390524;TAL1_TCF{3,4,12}:0.310235133746;NFE2L2:0.301665046208;FOXO1,3,4:0.30044617254;SOX2:0.300245977954;ZNF423:0.292219016057;STAT1,3:0.245250501161;HNF4A_NR2F1,2:0.23893557884;SPZ1:0.23869434954;XCPE1{core}:0.237223285666;ZNF148:0.221072161065;VSX1,2:0.21432027547;SOX5:0.195238810769;MAZ:0.186522380675;PAX1,9:0.168567237161;ZNF384:0.160971947893;NKX6-1,2:0.152172567319;ZBTB6:0.125689029806;SOX{8,9,10}:0.0951876782167;LEF1_TCF7_TCF7L1,2:0.0925985098532;TOPORS:0.0807262596398;TP53:0.077922413605;CEBPA,B_DDIT3:0.0664215043111;RFX1:0.0486146873881;HAND1,2:0.0429365361361;HNF1A:0.0393360518777;FOX{F1,F2,J1}:0.0379282260488;RBPJ:0.0377853402725;REST:0.0376897211125;CDX1,2,4:-0.0080621461319;GATA4:-0.0143314839131;NFE2:-0.0200380479424;HIC1:-0.0259020273169;MAFB:-0.0281802184261;ARID5B:-0.0398558922284;POU2F1..3:-0.0405263248855;NFIX:-0.0450562519949;MYFfamily:-0.0672760474916;NHLH1,2:-0.067828086099;AIRE:-0.0725948488768;HOXA9_MEIS1:-0.0764922838191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0769577848966;HES1:-0.0899458534545;MZF1:-0.0991995573888;HBP1_HMGB_SSRP1_UBTF:-0.107750715205;E2F1..5:-0.12370907083;HLF:-0.125157518846;FOXA2:-0.125299775218;TLX2:-0.125613534324;FOXM1:-0.13696748048;PRRX1,2:-0.142537813872;EGR1..3:-0.143647378077;HMGA1,2:-0.162186656797;ZNF143:-0.162627164565;NFE2L1:-0.168822528407;NFY{A,B,C}:-0.170703362352;PRDM1:-0.176941032864;SP1:-0.18373885534;MEF2{A,B,C,D}:-0.184561260375;DMAP1_NCOR{1,2}_SMARC:-0.188377784155;ETS1,2:-0.191180992152;NFKB1_REL_RELA:-0.193326395853;BACH2:-0.195106304226;TFAP2{A,C}:-0.202474782264;NANOG:-0.208649149794;SPIB:-0.221364902214;NKX3-2:-0.224192540949;PAX3,7:-0.224463300627;ZBTB16:-0.225619809705;FOXQ1:-0.225970572183;YY1:-0.227605793477;AHR_ARNT_ARNT2:-0.246998772247;IRF7:-0.248873424517;TFDP1:-0.257258525129;FOS_FOS{B,L1}_JUN{B,D}:-0.266203200528;IRF1,2:-0.278123072761;PPARG:-0.278310646576;POU5F1:-0.279282269017;bHLH_family:-0.28128240167;EP300:-0.288202930491;POU3F1..4:-0.299762718069;ALX1:-0.303057795192;RREB1:-0.31014743959;RUNX1..3:-0.311729063101;ELK1,4_GABP{A,B1}:-0.316239416148;FOX{I1,J2}:-0.331639132265;FOSL2:-0.343173587809;SPI1:-0.35489296889;MTE{core}:-0.357868970906;MED-1{core}:-0.359895372758;ZFP161:-0.37550060836;FOX{D1,D2}:-0.383589222806;POU6F1:-0.418035999519;ELF1,2,4:-0.421774745877;HIF1A:-0.44226701421;JUN:-0.447254925423;MTF1:-0.457293229197;HMX1:-0.464142667604;BPTF:-0.475633226058;PAX6:-0.505364173553;PAX2:-0.533588474154;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.543477210043;TBX4,5:-0.549894244743;POU1F1:-0.577742688991;NFIL3:-0.583678227305;ATF4:-0.589396133952;TFAP2B:-0.591362556521;IKZF2:-0.597671205102;FOXL1:-0.61091274257;CUX2:-0.622693779831;RORA:-0.623111467775;ATF5_CREB3:-0.629692855571;NKX2-3_NKX2-5:-0.644870336055;NRF1:-0.648355543864;GCM1,2:-0.667330925474;MYB:-0.667593403051;BREu{core}:-0.66788831609;TGIF1:-0.738490909864;SREBF1,2:-0.756306352374;FOXP1:-0.759940504655;PAX4:-0.764316619552;OCT4_SOX2{dimer}:-0.766183665847;ZEB1:-0.798865667946;RFX2..5_RFXANK_RFXAP:-0.821984811836;SNAI1..3:-0.847988063031;CREB1:-0.864106493799;LMO2:-0.888083286487;ADNP_IRX_SIX_ZHX:-0.925754271195;ATF2:-1.00576950853;FOXN1:-1.08285956845;MYOD1:-1.1569258687;PITX1..3:-1.21762779031;PDX1:-1.30409188932;HOX{A6,A7,B6,B7}:-2.24404779627 | |top_motifs=RXR{A,B,G}:2.23493134038;IKZF1:1.78430268538;GLI1..3:1.546699879;RXRA_VDR{dimer}:1.44698037016;NR1H4:1.36844524021;NR6A1:1.32922538232;HOX{A5,B5}:1.29585919961;TFAP4:1.12565044916;ZNF238:1.0483507953;EN1,2:1.04234675105;SMAD1..7,9:1.02637338162;NKX2-1,4:0.995234650863;AR:0.986181507388;UFEwm:0.973222684154;CRX:0.955894571712;EBF1:0.861792831391;CDC5L:0.851733036196;FOXP3:0.81820245924;TLX1..3_NFIC{dimer}:0.815445070353;GTF2A1,2:0.813917818847;MYBL2:0.807637186923;NKX2-2,8:0.766233273467;EVI1:0.754432004036;STAT5{A,B}:0.751840863959;TEF:0.73703563523;XBP1:0.723471604062;LHX3,4:0.702493460893;NANOG{mouse}:0.697481218055;NKX3-1:0.691864403864;PAX5:0.655859855701;SOX17:0.607084989418;SRF:0.601199251603;ZIC1..3:0.583298312945;TFCP2:0.5720629131;ALX4:0.554843320664;KLF4:0.549442833866;GZF1:0.547175856982;STAT2,4,6:0.543859560819;HSF1,2:0.542436842939;GFI1B:0.537750860166;NFATC1..3:0.527817800367;NR3C1:0.511225294162;ESR1:0.486432374052;PBX1:0.479643948527;TEAD1:0.463782263796;DBP:0.45015395973;PATZ1:0.449831488376;NR5A1,2:0.440266739956;ESRRA:0.438311109028;GFI1:0.435033943917;GATA6:0.431884911527;GTF2I:0.424618548612;ONECUT1,2:0.415547984111;ATF6:0.401183720092;TBP:0.389410668228;PAX8:0.373221871668;FOXD3:0.36668128164;HOX{A4,D4}:0.354391215476;T:0.315312390524;TAL1_TCF{3,4,12}:0.310235133746;NFE2L2:0.301665046208;FOXO1,3,4:0.30044617254;SOX2:0.300245977954;ZNF423:0.292219016057;STAT1,3:0.245250501161;HNF4A_NR2F1,2:0.23893557884;SPZ1:0.23869434954;XCPE1{core}:0.237223285666;ZNF148:0.221072161065;VSX1,2:0.21432027547;SOX5:0.195238810769;MAZ:0.186522380675;PAX1,9:0.168567237161;ZNF384:0.160971947893;NKX6-1,2:0.152172567319;ZBTB6:0.125689029806;SOX{8,9,10}:0.0951876782167;LEF1_TCF7_TCF7L1,2:0.0925985098532;TOPORS:0.0807262596398;TP53:0.077922413605;CEBPA,B_DDIT3:0.0664215043111;RFX1:0.0486146873881;HAND1,2:0.0429365361361;HNF1A:0.0393360518777;FOX{F1,F2,J1}:0.0379282260488;RBPJ:0.0377853402725;REST:0.0376897211125;CDX1,2,4:-0.0080621461319;GATA4:-0.0143314839131;NFE2:-0.0200380479424;HIC1:-0.0259020273169;MAFB:-0.0281802184261;ARID5B:-0.0398558922284;POU2F1..3:-0.0405263248855;NFIX:-0.0450562519949;MYFfamily:-0.0672760474916;NHLH1,2:-0.067828086099;AIRE:-0.0725948488768;HOXA9_MEIS1:-0.0764922838191;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0769577848966;HES1:-0.0899458534545;MZF1:-0.0991995573888;HBP1_HMGB_SSRP1_UBTF:-0.107750715205;E2F1..5:-0.12370907083;HLF:-0.125157518846;FOXA2:-0.125299775218;TLX2:-0.125613534324;FOXM1:-0.13696748048;PRRX1,2:-0.142537813872;EGR1..3:-0.143647378077;HMGA1,2:-0.162186656797;ZNF143:-0.162627164565;NFE2L1:-0.168822528407;NFY{A,B,C}:-0.170703362352;PRDM1:-0.176941032864;SP1:-0.18373885534;MEF2{A,B,C,D}:-0.184561260375;DMAP1_NCOR{1,2}_SMARC:-0.188377784155;ETS1,2:-0.191180992152;NFKB1_REL_RELA:-0.193326395853;BACH2:-0.195106304226;TFAP2{A,C}:-0.202474782264;NANOG:-0.208649149794;SPIB:-0.221364902214;NKX3-2:-0.224192540949;PAX3,7:-0.224463300627;ZBTB16:-0.225619809705;FOXQ1:-0.225970572183;YY1:-0.227605793477;AHR_ARNT_ARNT2:-0.246998772247;IRF7:-0.248873424517;TFDP1:-0.257258525129;FOS_FOS{B,L1}_JUN{B,D}:-0.266203200528;IRF1,2:-0.278123072761;PPARG:-0.278310646576;POU5F1:-0.279282269017;bHLH_family:-0.28128240167;EP300:-0.288202930491;POU3F1..4:-0.299762718069;ALX1:-0.303057795192;RREB1:-0.31014743959;RUNX1..3:-0.311729063101;ELK1,4_GABP{A,B1}:-0.316239416148;FOX{I1,J2}:-0.331639132265;FOSL2:-0.343173587809;SPI1:-0.35489296889;MTE{core}:-0.357868970906;MED-1{core}:-0.359895372758;ZFP161:-0.37550060836;FOX{D1,D2}:-0.383589222806;POU6F1:-0.418035999519;ELF1,2,4:-0.421774745877;HIF1A:-0.44226701421;JUN:-0.447254925423;MTF1:-0.457293229197;HMX1:-0.464142667604;BPTF:-0.475633226058;PAX6:-0.505364173553;PAX2:-0.533588474154;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.543477210043;TBX4,5:-0.549894244743;POU1F1:-0.577742688991;NFIL3:-0.583678227305;ATF4:-0.589396133952;TFAP2B:-0.591362556521;IKZF2:-0.597671205102;FOXL1:-0.61091274257;CUX2:-0.622693779831;RORA:-0.623111467775;ATF5_CREB3:-0.629692855571;NKX2-3_NKX2-5:-0.644870336055;NRF1:-0.648355543864;GCM1,2:-0.667330925474;MYB:-0.667593403051;BREu{core}:-0.66788831609;TGIF1:-0.738490909864;SREBF1,2:-0.756306352374;FOXP1:-0.759940504655;PAX4:-0.764316619552;OCT4_SOX2{dimer}:-0.766183665847;ZEB1:-0.798865667946;RFX2..5_RFXANK_RFXAP:-0.821984811836;SNAI1..3:-0.847988063031;CREB1:-0.864106493799;LMO2:-0.888083286487;ADNP_IRX_SIX_ZHX:-0.925754271195;ATF2:-1.00576950853;FOXN1:-1.08285956845;MYOD1:-1.1569258687;PITX1..3:-1.21762779031;PDX1:-1.30409188932;HOX{A6,A7,B6,B7}:-2.24404779627 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11605-120I3;search_select_hide=table117:FF:11605-120I3 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Cardiac Myocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12350 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12350
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12350
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.4 |
| 10 | 10 | 0.862 |
| 100 | 100 | 0.748 |
| 101 | 101 | 0.604 |
| 102 | 102 | 0.175 |
| 103 | 103 | 0.162 |
| 104 | 104 | 0.264 |
| 105 | 105 | 0.811 |
| 106 | 106 | 0.0359 |
| 107 | 107 | 0.00472 |
| 108 | 108 | 0.316 |
| 109 | 109 | 0.778 |
| 11 | 11 | 0.127 |
| 110 | 110 | 0.1 |
| 111 | 111 | 0.0841 |
| 112 | 112 | 0.446 |
| 113 | 113 | 0.0873 |
| 114 | 114 | 0.603 |
| 115 | 115 | 0.312 |
| 116 | 116 | 0.0526 |
| 117 | 117 | 0.334 |
| 118 | 118 | 0.794 |
| 119 | 119 | 0.941 |
| 12 | 12 | 0.297 |
| 120 | 120 | 0.0828 |
| 121 | 121 | 0.182 |
| 122 | 122 | 0.369 |
| 123 | 123 | 0.00414 |
| 124 | 124 | 0.375 |
| 125 | 125 | 0.83 |
| 126 | 126 | 0.443 |
| 127 | 127 | 0.14 |
| 128 | 128 | 0.00932 |
| 129 | 129 | 0.919 |
| 13 | 13 | 0.799 |
| 130 | 130 | 0.118 |
| 131 | 131 | 0.795 |
| 132 | 132 | 0.317 |
| 133 | 133 | 0.383 |
| 134 | 134 | 0.381 |
| 135 | 135 | 0.434 |
| 136 | 136 | 0.49 |
| 137 | 137 | 0.481 |
| 138 | 138 | 0.748 |
| 139 | 139 | 0.538 |
| 14 | 14 | 0.678 |
| 140 | 140 | 0.879 |
| 141 | 141 | 0.39 |
| 142 | 142 | 0.309 |
| 143 | 143 | 0.364 |
| 144 | 144 | 0.124 |
| 145 | 145 | 0.283 |
| 146 | 146 | 0.105 |
| 147 | 147 | 0.242 |
| 148 | 148 | 0.496 |
| 149 | 149 | 0.0752 |
| 15 | 15 | 0.494 |
| 150 | 150 | 0.217 |
| 151 | 151 | 0.485 |
| 152 | 152 | 0.185 |
| 153 | 153 | 0.846 |
| 154 | 154 | 0.389 |
| 155 | 155 | 0.0343 |
| 156 | 156 | 0.58 |
| 157 | 157 | 0.699 |
| 158 | 158 | 0.00543 |
| 159 | 159 | 0.152 |
| 16 | 16 | 0.0782 |
| 160 | 160 | 0.0626 |
| 161 | 161 | 0.881 |
| 162 | 162 | 0.311 |
| 163 | 163 | 0.844 |
| 164 | 164 | 0.375 |
| 165 | 165 | 0.996 |
| 166 | 166 | 0.105 |
| 167 | 167 | 0.197 |
| 168 | 168 | 0.644 |
| 169 | 169 | 0.0582 |
| 17 | 17 | 0.845 |
| 18 | 18 | 0.281 |
| 19 | 19 | 0.0474 |
| 2 | 2 | 0.212 |
| 20 | 20 | 0.331 |
| 21 | 21 | 0.393 |
| 22 | 22 | 0.18 |
| 23 | 23 | 0.166 |
| 24 | 24 | 0.531 |
| 25 | 25 | 0.617 |
| 26 | 26 | 0.111 |
| 27 | 27 | 0.407 |
| 28 | 28 | 0.359 |
| 29 | 29 | 0.254 |
| 3 | 3 | 0.276 |
| 30 | 30 | 0.326 |
| 31 | 31 | 0.864 |
| 32 | 32 | 1.28563e-10 |
| 33 | 33 | 0.33 |
| 34 | 34 | 0.116 |
| 35 | 35 | 0.499 |
| 36 | 36 | 0.872 |
| 37 | 37 | 0.2 |
| 38 | 38 | 0.76 |
| 39 | 39 | 0.0352 |
| 4 | 4 | 0.163 |
| 40 | 40 | 0.893 |
| 41 | 41 | 0.605 |
| 42 | 42 | 0.702 |
| 43 | 43 | 0.166 |
| 44 | 44 | 0.0451 |
| 45 | 45 | 0.392 |
| 46 | 46 | 0.137 |
| 47 | 47 | 0.649 |
| 48 | 48 | 0.377 |
| 49 | 49 | 0.38 |
| 5 | 5 | 0.342 |
| 50 | 50 | 0.336 |
| 51 | 51 | 0.486 |
| 52 | 52 | 0.433 |
| 53 | 53 | 0.382 |
| 54 | 54 | 0.915 |
| 55 | 55 | 0.843 |
| 56 | 56 | 0.875 |
| 57 | 57 | 0.682 |
| 58 | 58 | 0.992 |
| 59 | 59 | 0.0415 |
| 6 | 6 | 0.855 |
| 60 | 60 | 0.766 |
| 61 | 61 | 0.591 |
| 62 | 62 | 0.364 |
| 63 | 63 | 0.379 |
| 64 | 64 | 0.444 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.739 |
| 67 | 67 | 0.905 |
| 68 | 68 | 0.93 |
| 69 | 69 | 0.298 |
| 7 | 7 | 0.898 |
| 70 | 70 | 0.491 |
| 71 | 71 | 0.0649 |
| 72 | 72 | 0.6 |
| 73 | 73 | 0.12 |
| 74 | 74 | 0.257 |
| 75 | 75 | 0.501 |
| 76 | 76 | 0.561 |
| 77 | 77 | 0.127 |
| 78 | 78 | 0.911 |
| 79 | 79 | 0.117 |
| 8 | 8 | 0.0369 |
| 80 | 80 | 0.718 |
| 81 | 81 | 0.671 |
| 82 | 82 | 0.295 |
| 83 | 83 | 0.43 |
| 84 | 84 | 0.72 |
| 85 | 85 | 0.00899 |
| 86 | 86 | 0.758 |
| 87 | 87 | 0.0259 |
| 88 | 88 | 0.536 |
| 89 | 89 | 0.144 |
| 9 | 9 | 0.224 |
| 90 | 90 | 0.976 |
| 91 | 91 | 0.457 |
| 92 | 92 | 0.477 |
| 93 | 93 | 0.306 |
| 94 | 94 | 0.59 |
| 95 | 95 | 0.413 |
| 96 | 96 | 0.744 |
| 97 | 97 | 0.822 |
| 98 | 98 | 0.362 |
| 99 | 99 | 0.00408 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12350
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000118 human cardiac myocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000737 (striated muscle cell)
0000746 (cardiac muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000118 (human cardiac myocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000513 (cardiac muscle myoblast)
