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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005368
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Line 35: Line 41:
|fonse_treatment_closure=
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|id=FF:11545-120B6
|id=FF:11545-120B6
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11545
|name=CD34+ Progenitors, donor1
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|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
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|rna_box=120
|rna_box=120
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|rna_catalog_number=3H100-60-5
Line 57: Line 78:
|rna_weight_ug=0.1
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|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.02283855072733e-220!GO:0043227;membrane-bound organelle;1.93095008446011e-189!GO:0043231;intracellular membrane-bound organelle;5.28444551346539e-189!GO:0043226;organelle;4.00624515852161e-180!GO:0043229;intracellular organelle;1.50081999718764e-179!GO:0005737;cytoplasm;2.67401210040461e-135!GO:0044422;organelle part;3.41840322802881e-107!GO:0044446;intracellular organelle part;2.14599481434938e-105!GO:0044237;cellular metabolic process;4.20006946382966e-100!GO:0005634;nucleus;1.43825190521452e-98!GO:0044238;primary metabolic process;1.98755873448317e-96!GO:0043170;macromolecule metabolic process;3.64372915552038e-95!GO:0044444;cytoplasmic part;5.89957559594282e-94!GO:0032991;macromolecular complex;4.7925802219984e-90!GO:0030529;ribonucleoprotein complex;1.01164807989702e-77!GO:0003723;RNA binding;1.96684539790194e-72!GO:0044428;nuclear part;9.1327412331393e-69!GO:0043283;biopolymer metabolic process;1.35710564930637e-64!GO:0005515;protein binding;7.17064065337017e-62!GO:0010467;gene expression;1.33855934619724e-61!GO:0043233;organelle lumen;9.23351913214988e-61!GO:0031974;membrane-enclosed lumen;9.23351913214988e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.66375735153774e-56!GO:0005739;mitochondrion;7.43340741973687e-49!GO:0006412;translation;1.72600829660983e-48!GO:0019538;protein metabolic process;1.11496798107167e-45!GO:0043234;protein complex;1.24286572954112e-45!GO:0005840;ribosome;8.49231461555837e-45!GO:0006396;RNA processing;9.4019850718812e-44!GO:0044267;cellular protein metabolic process;1.67721399985983e-43!GO:0031981;nuclear lumen;5.99532591522555e-43!GO:0016071;mRNA metabolic process;7.11888736038794e-43!GO:0044260;cellular macromolecule metabolic process;7.17911092638133e-43!GO:0003676;nucleic acid binding;3.28617133008181e-40!GO:0003735;structural constituent of ribosome;1.04196152967103e-39!GO:0033036;macromolecule localization;3.56950568090667e-38!GO:0009059;macromolecule biosynthetic process;1.06419848439147e-36!GO:0008380;RNA splicing;1.22735028109017e-36!GO:0033279;ribosomal subunit;3.93512501529119e-36!GO:0015031;protein transport;5.83584391990618e-36!GO:0006397;mRNA processing;1.16295807400229e-35!GO:0005829;cytosol;3.14075122663653e-35!GO:0045184;establishment of protein localization;3.11160544491245e-34!GO:0008104;protein localization;5.65072207924606e-34!GO:0016070;RNA metabolic process;2.29584912083159e-33!GO:0009058;biosynthetic process;5.61945920321671e-33!GO:0016043;cellular component organization and biogenesis;7.97888094052834e-33!GO:0031090;organelle membrane;9.66910249226148e-33!GO:0044429;mitochondrial part;9.66910249226148e-33!GO:0065003;macromolecular complex assembly;1.13572276838325e-32!GO:0044249;cellular biosynthetic process;1.72465984814222e-32!GO:0031967;organelle envelope;7.54232136471418e-31!GO:0006259;DNA metabolic process;8.63815088252278e-31!GO:0031975;envelope;1.50615965840714e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.25008042056441e-30!GO:0005654;nucleoplasm;5.27670649235962e-29!GO:0022607;cellular component assembly;1.91771446742672e-28!GO:0005681;spliceosome;1.29637855229197e-27!GO:0044445;cytosolic part;2.54697212440408e-27!GO:0046907;intracellular transport;1.44902832896631e-26!GO:0006886;intracellular protein transport;1.88842139767827e-25!GO:0006996;organelle organization and biogenesis;5.82864349070702e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.4785872702669e-24!GO:0044451;nucleoplasm part;4.22702402751955e-23!GO:0008134;transcription factor binding;1.29989120421792e-22!GO:0019866;organelle inner membrane;2.79079862025814e-22!GO:0000166;nucleotide binding;3.07244493967185e-21!GO:0006512;ubiquitin cycle;5.09791078110627e-21!GO:0005740;mitochondrial envelope;6.50317595632211e-21!GO:0031966;mitochondrial membrane;2.12722749970097e-20!GO:0006119;oxidative phosphorylation;1.07803759644175e-19!GO:0005743;mitochondrial inner membrane;1.52700934235106e-19!GO:0051649;establishment of cellular localization;2.07412995875002e-19!GO:0015935;small ribosomal subunit;2.60913969256881e-19!GO:0022618;protein-RNA complex assembly;3.15690920575787e-19!GO:0051641;cellular localization;3.3828033395433e-19!GO:0006915;apoptosis;3.49630154620563e-19!GO:0012501;programmed cell death;3.79374013180148e-19!GO:0019941;modification-dependent protein catabolic process;1.25808617242576e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.25808617242576e-18!GO:0043228;non-membrane-bound organelle;1.31711949458987e-18!GO:0043232;intracellular non-membrane-bound organelle;1.31711949458987e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.45594765265972e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.73678559187237e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.92992040412636e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.04001240780544e-18!GO:0016462;pyrophosphatase activity;2.15675317864288e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.36253709408372e-18!GO:0044257;cellular protein catabolic process;3.49448982751378e-18!GO:0008219;cell death;4.78831141766915e-18!GO:0016265;death;4.78831141766915e-18!GO:0015934;large ribosomal subunit;7.85968457049299e-18!GO:0006323;DNA packaging;9.49952779206186e-18!GO:0044455;mitochondrial membrane part;9.60552283150795e-18!GO:0050794;regulation of cellular process;1.01284775788077e-17!GO:0017111;nucleoside-triphosphatase activity;1.12619573787606e-17!GO:0044265;cellular macromolecule catabolic process;1.72299409080166e-17!GO:0043285;biopolymer catabolic process;4.6725067583946e-17!GO:0051276;chromosome organization and biogenesis;6.42596686783589e-17!GO:0043412;biopolymer modification;9.16477588255113e-17!GO:0016874;ligase activity;2.42246458135507e-16!GO:0016604;nuclear body;3.11248486628395e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.56249475019623e-16!GO:0003712;transcription cofactor activity;1.57843123231175e-15!GO:0008135;translation factor activity, nucleic acid binding;2.42851673816741e-15!GO:0005746;mitochondrial respiratory chain;2.51481787571684e-15!GO:0006605;protein targeting;5.25099215706908e-15!GO:0019222;regulation of metabolic process;1.04303737136532e-14!GO:0006464;protein modification process;1.38231428685212e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.21902883812979e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.58829430539616e-14!GO:0006457;protein folding;5.63602343153129e-14!GO:0006913;nucleocytoplasmic transport;5.68068532412536e-14!GO:0016607;nuclear speck;6.63566827232409e-14!GO:0032553;ribonucleotide binding;8.53481796636346e-14!GO:0032555;purine ribonucleotide binding;8.53481796636346e-14!GO:0030163;protein catabolic process;9.00238239751189e-14!GO:0009057;macromolecule catabolic process;9.00238239751189e-14!GO:0050136;NADH dehydrogenase (quinone) activity;9.69805977603396e-14!GO:0003954;NADH dehydrogenase activity;9.69805977603396e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.69805977603396e-14!GO:0044248;cellular catabolic process;1.01638409968618e-13!GO:0051169;nuclear transport;1.04659677094642e-13!GO:0031980;mitochondrial lumen;1.14084058465155e-13!GO:0005759;mitochondrial matrix;1.14084058465155e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.23211831962751e-13!GO:0043687;post-translational protein modification;1.49477194069241e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.59232712066573e-13!GO:0000375;RNA splicing, via transesterification reactions;1.59232712066573e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.59232712066573e-13!GO:0065004;protein-DNA complex assembly;1.95557867261315e-13!GO:0005730;nucleolus;1.95557867261315e-13!GO:0017076;purine nucleotide binding;4.55568182091703e-13!GO:0048770;pigment granule;4.55690169604739e-13!GO:0042470;melanosome;4.55690169604739e-13!GO:0042981;regulation of apoptosis;7.97031677834472e-13!GO:0006974;response to DNA damage stimulus;9.29802132907323e-13!GO:0043067;regulation of programmed cell death;1.4058723993576e-12!GO:0031323;regulation of cellular metabolic process;1.73395453989861e-12!GO:0050789;regulation of biological process;1.84224684764933e-12!GO:0007049;cell cycle;2.1255445722301e-12!GO:0006333;chromatin assembly or disassembly;2.28896987775985e-12!GO:0006413;translational initiation;2.28896987775985e-12!GO:0003743;translation initiation factor activity;2.3593577630328e-12!GO:0042623;ATPase activity, coupled;2.68381141494124e-12!GO:0016887;ATPase activity;2.82799218327729e-12!GO:0005694;chromosome;3.70042241617831e-12!GO:0005524;ATP binding;5.09019891788332e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.35301704525038e-12!GO:0042773;ATP synthesis coupled electron transport;6.35301704525038e-12!GO:0000785;chromatin;7.11578025196458e-12!GO:0032559;adenyl ribonucleotide binding;8.07723959603663e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.96675399258806e-12!GO:0045271;respiratory chain complex I;8.96675399258806e-12!GO:0005747;mitochondrial respiratory chain complex I;8.96675399258806e-12!GO:0006366;transcription from RNA polymerase II promoter;1.07864886739318e-11!GO:0048523;negative regulation of cellular process;2.44849280229963e-11!GO:0012505;endomembrane system;2.89013605927195e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.03714323918135e-11!GO:0016192;vesicle-mediated transport;4.03700699086859e-11!GO:0006446;regulation of translational initiation;4.05460919222153e-11!GO:0006350;transcription;4.21456552116134e-11!GO:0030554;adenyl nucleotide binding;5.11572609248289e-11!GO:0010468;regulation of gene expression;5.55796005748766e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.66953536095515e-11!GO:0044427;chromosomal part;5.90813339074375e-11!GO:0016568;chromatin modification;1.12586913698634e-10!GO:0044453;nuclear membrane part;1.23858361143971e-10!GO:0006281;DNA repair;1.49882295917468e-10!GO:0017038;protein import;2.57183619697174e-10!GO:0005635;nuclear envelope;2.81448171544129e-10!GO:0051082;unfolded protein binding;2.99046623743216e-10!GO:0003713;transcription coactivator activity;3.01130954998322e-10!GO:0006403;RNA localization;3.31199594262429e-10!GO:0004386;helicase activity;3.36798668785276e-10!GO:0050657;nucleic acid transport;3.70869407402668e-10!GO:0051236;establishment of RNA localization;3.70869407402668e-10!GO:0050658;RNA transport;3.70869407402668e-10!GO:0031965;nuclear membrane;4.94305416807936e-10!GO:0043069;negative regulation of programmed cell death;5.04315910495875e-10!GO:0043066;negative regulation of apoptosis;5.97981717208841e-10!GO:0008639;small protein conjugating enzyme activity;6.24599588365455e-10!GO:0004842;ubiquitin-protein ligase activity;6.85967387879581e-10!GO:0005761;mitochondrial ribosome;1.07970653361179e-09!GO:0000313;organellar ribosome;1.07970653361179e-09!GO:0006334;nucleosome assembly;1.3929806601961e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44973145675238e-09!GO:0065007;biological regulation;1.77382012910064e-09!GO:0048519;negative regulation of biological process;1.84957399241569e-09!GO:0048193;Golgi vesicle transport;2.03719948157205e-09!GO:0016564;transcription repressor activity;2.71049726486497e-09!GO:0016563;transcription activator activity;3.36374611282696e-09!GO:0031497;chromatin assembly;3.95636941204696e-09!GO:0006793;phosphorus metabolic process;4.40340699819054e-09!GO:0006796;phosphate metabolic process;4.40340699819054e-09!GO:0006916;anti-apoptosis;6.85468869511694e-09!GO:0032774;RNA biosynthetic process;6.98476834336222e-09!GO:0019787;small conjugating protein ligase activity;6.98476834336222e-09!GO:0005643;nuclear pore;7.45259278654169e-09!GO:0006351;transcription, DNA-dependent;8.38190145932383e-09!GO:0051726;regulation of cell cycle;8.55668846861121e-09!GO:0019829;cation-transporting ATPase activity;9.61624895783522e-09!GO:0051186;cofactor metabolic process;1.04943235690054e-08!GO:0007243;protein kinase cascade;1.06458154608574e-08!GO:0009259;ribonucleotide metabolic process;1.12404822078133e-08!GO:0006164;purine nucleotide biosynthetic process;1.14228923856675e-08!GO:0006163;purine nucleotide metabolic process;1.49210846409339e-08!GO:0016310;phosphorylation;1.64388092377252e-08!GO:0005794;Golgi apparatus;2.06303546916593e-08!GO:0000074;regulation of progression through cell cycle;2.21006827988708e-08!GO:0009260;ribonucleotide biosynthetic process;2.47389851747629e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.59376878316074e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.63510368694605e-08!GO:0008026;ATP-dependent helicase activity;2.76957489154162e-08!GO:0051246;regulation of protein metabolic process;3.07357704211399e-08!GO:0051028;mRNA transport;3.09439649515822e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.26950703073333e-08!GO:0009150;purine ribonucleotide metabolic process;3.57797741618519e-08!GO:0045449;regulation of transcription;3.94793358450615e-08!GO:0009719;response to endogenous stimulus;4.40519733010757e-08!GO:0008565;protein transporter activity;5.03497913438548e-08!GO:0031324;negative regulation of cellular metabolic process;5.1939951273803e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.0877627881451e-08!GO:0022402;cell cycle process;7.73120226121416e-08!GO:0005783;endoplasmic reticulum;8.2776466414029e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.34803740247479e-08!GO:0051170;nuclear import;1.06160174133397e-07!GO:0006606;protein import into nucleus;1.16522740497614e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.21433932112174e-07!GO:0006732;coenzyme metabolic process;1.33673854620417e-07!GO:0065002;intracellular protein transport across a membrane;1.42802976420279e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.48139162152786e-07!GO:0016881;acid-amino acid ligase activity;1.90181908852285e-07!GO:0005793;ER-Golgi intermediate compartment;2.32740840098661e-07!GO:0009056;catabolic process;2.52953275440785e-07!GO:0015986;ATP synthesis coupled proton transport;2.79219200213299e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.79219200213299e-07!GO:0006260;DNA replication;2.85092203926653e-07!GO:0009060;aerobic respiration;3.01288301568924e-07!GO:0016481;negative regulation of transcription;3.10546060977472e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.70649499063843e-07!GO:0046930;pore complex;3.77015118371757e-07!GO:0042254;ribosome biogenesis and assembly;4.33128888771093e-07!GO:0044432;endoplasmic reticulum part;6.04476697564605e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.25106020354236e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.25106020354236e-07!GO:0005768;endosome;6.52737753915897e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.70919197704461e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.70919197704461e-07!GO:0006355;regulation of transcription, DNA-dependent;6.8063819471964e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.94691251067978e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.01468342184766e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.20791823629486e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.66419448431894e-07!GO:0045786;negative regulation of progression through cell cycle;1.01013396480947e-06!GO:0009055;electron carrier activity;1.35135030724818e-06!GO:0009892;negative regulation of metabolic process;1.38791462839524e-06!GO:0006461;protein complex assembly;1.56110026848322e-06!GO:0016787;hydrolase activity;1.56110026848322e-06!GO:0032446;protein modification by small protein conjugation;1.56495149393864e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.83135793372612e-06!GO:0000245;spliceosome assembly;1.83135793372612e-06!GO:0009141;nucleoside triphosphate metabolic process;1.94879163368449e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.00955162722181e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.00955162722181e-06!GO:0006754;ATP biosynthetic process;2.0865935608032e-06!GO:0006753;nucleoside phosphate metabolic process;2.0865935608032e-06!GO:0003714;transcription corepressor activity;2.3249875663951e-06!GO:0045333;cellular respiration;2.5274988754848e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.53353267319642e-06!GO:0003677;DNA binding;2.61680056885385e-06!GO:0016567;protein ubiquitination;2.68280842360674e-06!GO:0051168;nuclear export;2.86786793591416e-06!GO:0004298;threonine endopeptidase activity;2.91925804041886e-06!GO:0043566;structure-specific DNA binding;3.28004591529923e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.40020199559233e-06!GO:0045259;proton-transporting ATP synthase complex;3.61398555989924e-06!GO:0000786;nucleosome;4.59214483063724e-06!GO:0006950;response to stress;5.42910877190653e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.88516656746521e-06!GO:0000151;ubiquitin ligase complex;8.17453149721953e-06!GO:0005770;late endosome;8.4618646337111e-06!GO:0046034;ATP metabolic process;8.90038977099347e-06!GO:0065009;regulation of a molecular function;1.06204944202076e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.18878197573452e-05!GO:0008654;phospholipid biosynthetic process;1.32171200973305e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.43026435622874e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.55123965794332e-05!GO:0015399;primary active transmembrane transporter activity;1.55123965794332e-05!GO:0007242;intracellular signaling cascade;1.55471363160575e-05!GO:0016740;transferase activity;1.59381879682301e-05!GO:0019899;enzyme binding;1.74113707624759e-05!GO:0051427;hormone receptor binding;1.76228156726057e-05!GO:0003924;GTPase activity;1.9389255891008e-05!GO:0009117;nucleotide metabolic process;1.97260569365188e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.04537347995568e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.25219268926391e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.76060589052632e-05!GO:0006417;regulation of translation;2.7618810302243e-05!GO:0005789;endoplasmic reticulum membrane;2.76294264626683e-05!GO:0007005;mitochondrion organization and biogenesis;3.2933194642214e-05!GO:0035257;nuclear hormone receptor binding;3.5416735631038e-05!GO:0051188;cofactor biosynthetic process;3.61936598567511e-05!GO:0006613;cotranslational protein targeting to membrane;3.75786946396484e-05!GO:0005813;centrosome;3.86387541636503e-05!GO:0008270;zinc ion binding;4.25708492203766e-05!GO:0006401;RNA catabolic process;4.84959723481867e-05!GO:0003724;RNA helicase activity;4.95438189386942e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.42885992912425e-05!GO:0003729;mRNA binding;6.07699901230701e-05!GO:0016363;nuclear matrix;7.70626622641805e-05!GO:0006099;tricarboxylic acid cycle;8.21819956362414e-05!GO:0046356;acetyl-CoA catabolic process;8.21819956362414e-05!GO:0005773;vacuole;8.21819956362414e-05!GO:0003697;single-stranded DNA binding;8.95070866303449e-05!GO:0005667;transcription factor complex;0.000100280545984838!GO:0006364;rRNA processing;0.000106729725302575!GO:0006402;mRNA catabolic process;0.000108941423600419!GO:0016072;rRNA metabolic process;0.000108941423600419!GO:0006752;group transfer coenzyme metabolic process;0.000122576079187398!GO:0048475;coated membrane;0.000131283526993223!GO:0030117;membrane coat;0.000131283526993223!GO:0006399;tRNA metabolic process;0.00013191857393856!GO:0006352;transcription initiation;0.000140012179484488!GO:0043492;ATPase activity, coupled to movement of substances;0.000144830284447307!GO:0005815;microtubule organizing center;0.000161095758559675!GO:0009108;coenzyme biosynthetic process;0.000165376619839376!GO:0044440;endosomal part;0.000177226803691322!GO:0010008;endosome membrane;0.000177226803691322!GO:0006084;acetyl-CoA metabolic process;0.000177226803691322!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00019401038211319!GO:0016779;nucleotidyltransferase activity;0.000200129384849349!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000244660603310484!GO:0031982;vesicle;0.000296680373180603!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000303174465916592!GO:0004812;aminoacyl-tRNA ligase activity;0.000303174465916592!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000303174465916592!GO:0019843;rRNA binding;0.000321705609519039!GO:0031326;regulation of cellular biosynthetic process;0.00032407158901944!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000349165513763864!GO:0004674;protein serine/threonine kinase activity;0.000362388006246748!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000396912612744472!GO:0045892;negative regulation of transcription, DNA-dependent;0.000407764559286456!GO:0000323;lytic vacuole;0.000407764559286456!GO:0005764;lysosome;0.000407764559286456!GO:0030120;vesicle coat;0.000414749237841093!GO:0030662;coated vesicle membrane;0.000414749237841093!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000429013904077382!GO:0009889;regulation of biosynthetic process;0.000431113908745083!GO:0046914;transition metal ion binding;0.00043684895598337!GO:0048522;positive regulation of cellular process;0.000461635282546921!GO:0009109;coenzyme catabolic process;0.0004797649349456!GO:0008632;apoptotic program;0.000491333818767223!GO:0043038;amino acid activation;0.000492765830508597!GO:0006418;tRNA aminoacylation for protein translation;0.000492765830508597!GO:0043039;tRNA aminoacylation;0.000492765830508597!GO:0006261;DNA-dependent DNA replication;0.000495770659548556!GO:0005525;GTP binding;0.000546818553786117!GO:0043021;ribonucleoprotein binding;0.000572862755182226!GO:0048471;perinuclear region of cytoplasm;0.000592678978849754!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000616309402790731!GO:0016197;endosome transport;0.000676738377662873!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000733632984044716!GO:0043623;cellular protein complex assembly;0.000760662095652263!GO:0050790;regulation of catalytic activity;0.000761949563282688!GO:0031988;membrane-bound vesicle;0.000767815501606679!GO:0031410;cytoplasmic vesicle;0.000787598513248885!GO:0043065;positive regulation of apoptosis;0.000834002864460383!GO:0006612;protein targeting to membrane;0.000835192569548468!GO:0008186;RNA-dependent ATPase activity;0.000913961552599714!GO:0005762;mitochondrial large ribosomal subunit;0.000941739714031983!GO:0000315;organellar large ribosomal subunit;0.000941739714031983!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00097835815730129!GO:0009165;nucleotide biosynthetic process;0.000992682390413922!GO:0046474;glycerophospholipid biosynthetic process;0.0010062555800737!GO:0006818;hydrogen transport;0.00100631018251563!GO:0005885;Arp2/3 protein complex;0.00100631018251563!GO:0015992;proton transport;0.0010134437313068!GO:0006405;RNA export from nucleus;0.00103696010577794!GO:0043068;positive regulation of programmed cell death;0.00106064893139828!GO:0008234;cysteine-type peptidase activity;0.00108285384258791!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00108456462841105!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00108456462841105!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00108456462841105!GO:0007050;cell cycle arrest;0.00108621601194144!GO:0009615;response to virus;0.00110649214005436!GO:0046467;membrane lipid biosynthetic process;0.00110884311844741!GO:0031072;heat shock protein binding;0.00119475282106742!GO:0031252;leading edge;0.00119944784126766!GO:0051187;cofactor catabolic process;0.00124352177876317!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00128691892732789!GO:0032561;guanyl ribonucleotide binding;0.00136136633702878!GO:0019001;guanyl nucleotide binding;0.00136136633702878!GO:0003690;double-stranded DNA binding;0.00136616489879656!GO:0005637;nuclear inner membrane;0.00143696398647671!GO:0008047;enzyme activator activity;0.0014673329107626!GO:0000314;organellar small ribosomal subunit;0.00149420139551328!GO:0005763;mitochondrial small ribosomal subunit;0.00149420139551328!GO:0006917;induction of apoptosis;0.00157486617238571!GO:0015631;tubulin binding;0.00178420043445936!GO:0009967;positive regulation of signal transduction;0.00180564545353692!GO:0006891;intra-Golgi vesicle-mediated transport;0.00184444428597476!GO:0016023;cytoplasmic membrane-bound vesicle;0.00189141444623366!GO:0022890;inorganic cation transmembrane transporter activity;0.00189331463847229!GO:0000278;mitotic cell cycle;0.0018959419813692!GO:0030384;phosphoinositide metabolic process;0.00195363580764013!GO:0012502;induction of programmed cell death;0.00214958885568483!GO:0006611;protein export from nucleus;0.00228939157045484!GO:0044431;Golgi apparatus part;0.00241920423744994!GO:0004004;ATP-dependent RNA helicase activity;0.00246278363439958!GO:0046489;phosphoinositide biosynthetic process;0.00246863665796238!GO:0033116;ER-Golgi intermediate compartment membrane;0.00258596230921551!GO:0000287;magnesium ion binding;0.00258596230921551!GO:0043681;protein import into mitochondrion;0.00264301009202457!GO:0030518;steroid hormone receptor signaling pathway;0.00272073749436879!GO:0042802;identical protein binding;0.00276097015908768!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00279200622489368!GO:0045045;secretory pathway;0.00281390701268498!GO:0006338;chromatin remodeling;0.00282145142571039!GO:0006650;glycerophospholipid metabolic process;0.00284794253110579!GO:0007264;small GTPase mediated signal transduction;0.00289637772287021!GO:0006414;translational elongation;0.0030466825395695!GO:0046822;regulation of nucleocytoplasmic transport;0.00306889999484723!GO:0005769;early endosome;0.00307512713483588!GO:0005684;U2-dependent spliceosome;0.00309519687139147!GO:0006383;transcription from RNA polymerase III promoter;0.00313576381949594!GO:0003899;DNA-directed RNA polymerase activity;0.00319917226253276!GO:0005048;signal sequence binding;0.00363683165729767!GO:0051252;regulation of RNA metabolic process;0.00370603286653353!GO:0007259;JAK-STAT cascade;0.00390423557482481!GO:0051920;peroxiredoxin activity;0.00391428264516122!GO:0046966;thyroid hormone receptor binding;0.00395616240442135!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00399108019904108!GO:0006091;generation of precursor metabolites and energy;0.00406943132961828!GO:0051789;response to protein stimulus;0.00406993478009456!GO:0006986;response to unfolded protein;0.00406993478009456!GO:0005869;dynactin complex;0.00406993478009456!GO:0031625;ubiquitin protein ligase binding;0.00424286252152421!GO:0016584;nucleosome positioning;0.00425557345420045!GO:0060090;molecular adaptor activity;0.00435067315515282!GO:0030521;androgen receptor signaling pathway;0.00455174382947301!GO:0015630;microtubule cytoskeleton;0.00481148320048355!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00490771859136263!GO:0032940;secretion by cell;0.00490966981438231!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00492639045533157!GO:0016251;general RNA polymerase II transcription factor activity;0.00508266265275697!GO:0043488;regulation of mRNA stability;0.00548640943546719!GO:0043487;regulation of RNA stability;0.00548640943546719!GO:0045454;cell redox homeostasis;0.0055077968876776!GO:0000118;histone deacetylase complex;0.00557759674519911!GO:0008139;nuclear localization sequence binding;0.00608322238032293!GO:0043414;biopolymer methylation;0.00611396104898864!GO:0048487;beta-tubulin binding;0.00640314883170618!GO:0018193;peptidyl-amino acid modification;0.00646847694662618!GO:0048500;signal recognition particle;0.00657822839550634!GO:0048146;positive regulation of fibroblast proliferation;0.00668218514816538!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0067076307151213!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0067076307151213!GO:0031902;late endosome membrane;0.00678771414825654!GO:0035258;steroid hormone receptor binding;0.00698513049167013!GO:0030695;GTPase regulator activity;0.00701632712749258!GO:0016272;prefoldin complex;0.00738908449059608!GO:0043022;ribosome binding;0.00764771130741311!GO:0005798;Golgi-associated vesicle;0.00765968832873922!GO:0015980;energy derivation by oxidation of organic compounds;0.00767923981229298!GO:0016741;transferase activity, transferring one-carbon groups;0.00774164192622728!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00774398085977969!GO:0008276;protein methyltransferase activity;0.00775586669949595!GO:0030522;intracellular receptor-mediated signaling pathway;0.00775586669949595!GO:0051087;chaperone binding;0.00842277856664255!GO:0048518;positive regulation of biological process;0.0084378311640316!GO:0007006;mitochondrial membrane organization and biogenesis;0.00853597043594079!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00871629077320532!GO:0030097;hemopoiesis;0.00877868937156834!GO:0008168;methyltransferase activity;0.0087947413324299!GO:0022415;viral reproductive process;0.00897517662565762!GO:0006672;ceramide metabolic process;0.0091565269064225!GO:0005096;GTPase activator activity;0.00939338091959175!GO:0040029;regulation of gene expression, epigenetic;0.00974072604334781!GO:0006607;NLS-bearing substrate import into nucleus;0.00980141463339528!GO:0030099;myeloid cell differentiation;0.0100386257032425!GO:0016279;protein-lysine N-methyltransferase activity;0.0102040494579667!GO:0018024;histone-lysine N-methyltransferase activity;0.0102040494579667!GO:0016278;lysine N-methyltransferase activity;0.0102040494579667!GO:0048144;fibroblast proliferation;0.0102040494579667!GO:0048145;regulation of fibroblast proliferation;0.0102040494579667!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0102040494579667!GO:0005774;vacuolar membrane;0.0102151507930659!GO:0003725;double-stranded RNA binding;0.0103381403804644!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0104487065199359!GO:0015002;heme-copper terminal oxidase activity;0.0104487065199359!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0104487065199359!GO:0004129;cytochrome-c oxidase activity;0.0104487065199359!GO:0048468;cell development;0.0105211480167181!GO:0016859;cis-trans isomerase activity;0.0109610285048272!GO:0047485;protein N-terminus binding;0.0110194052142346!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0111527042231803!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0111527042231803!GO:0045047;protein targeting to ER;0.0111527042231803!GO:0008312;7S RNA binding;0.011303114334655!GO:0030867;rough endoplasmic reticulum membrane;0.0114232030529858!GO:0030218;erythrocyte differentiation;0.011572032411771!GO:0046519;sphingoid metabolic process;0.0116713470540802!GO:0006643;membrane lipid metabolic process;0.0121587065782682!GO:0046983;protein dimerization activity;0.0123425713634595!GO:0043433;negative regulation of transcription factor activity;0.0128218942156353!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0128218942156353!GO:0007265;Ras protein signal transduction;0.0128218942156353!GO:0051059;NF-kappaB binding;0.013266126025681!GO:0006302;double-strand break repair;0.0133050198054433!GO:0006376;mRNA splice site selection;0.0135643495817153!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0135643495817153!GO:0051052;regulation of DNA metabolic process;0.0135997090440912!GO:0003684;damaged DNA binding;0.0138694723423572!GO:0051090;regulation of transcription factor activity;0.0149940846772901!GO:0019783;small conjugating protein-specific protease activity;0.0150755974432963!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0156967790574293!GO:0004221;ubiquitin thiolesterase activity;0.0166188748815623!GO:0008017;microtubule binding;0.0167196608376544!GO:0005657;replication fork;0.0167930771525629!GO:0051329;interphase of mitotic cell cycle;0.0176903511888003!GO:0030041;actin filament polymerization;0.018320681884329!GO:0009116;nucleoside metabolic process;0.0183478705634823!GO:0006626;protein targeting to mitochondrion;0.0188151257632187!GO:0032984;macromolecular complex disassembly;0.0188151257632187!GO:0006310;DNA recombination;0.0189372129718079!GO:0032200;telomere organization and biogenesis;0.0190944357655787!GO:0000723;telomere maintenance;0.0190944357655787!GO:0017091;AU-rich element binding;0.0198421439198195!GO:0050779;RNA destabilization;0.0198421439198195!GO:0000289;poly(A) tail shortening;0.0198421439198195!GO:0044437;vacuolar part;0.0204245379171653!GO:0005788;endoplasmic reticulum lumen;0.0206990697283443!GO:0008287;protein serine/threonine phosphatase complex;0.0207611605489319!GO:0005083;small GTPase regulator activity;0.0209064909895795!GO:0004527;exonuclease activity;0.0209064909895795!GO:0005741;mitochondrial outer membrane;0.0209323565309905!GO:0030036;actin cytoskeleton organization and biogenesis;0.0210001116811714!GO:0009112;nucleobase metabolic process;0.0213065127941235!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0215185243589711!GO:0004843;ubiquitin-specific protease activity;0.0217428982782108!GO:0031124;mRNA 3'-end processing;0.0219034734221582!GO:0045941;positive regulation of transcription;0.0221278981986726!GO:0045947;negative regulation of translational initiation;0.0221311489628945!GO:0031968;organelle outer membrane;0.0223406071840849!GO:0016491;oxidoreductase activity;0.0224560723164281!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228459424960288!GO:0022411;cellular component disassembly;0.0228712032088992!GO:0003678;DNA helicase activity;0.0229220316671681!GO:0016044;membrane organization and biogenesis;0.0229884006492518!GO:0005070;SH3/SH2 adaptor activity;0.0239996241473179!GO:0003682;chromatin binding;0.0240187230139701!GO:0003746;translation elongation factor activity;0.0242223343359636!GO:0008637;apoptotic mitochondrial changes;0.024434186180883!GO:0007021;tubulin folding;0.0247009957242152!GO:0006406;mRNA export from nucleus;0.0247941278817088!GO:0000119;mediator complex;0.0247987341829073!GO:0051338;regulation of transferase activity;0.0250561899658058!GO:0008097;5S rRNA binding;0.0251523959887103!GO:0019221;cytokine and chemokine mediated signaling pathway;0.0252930531080043!GO:0044438;microbody part;0.0253285508683818!GO:0044439;peroxisomal part;0.0253285508683818!GO:0009966;regulation of signal transduction;0.0254657923960162!GO:0019867;outer membrane;0.0254657923960162!GO:0045637;regulation of myeloid cell differentiation;0.0260602451099421!GO:0007040;lysosome organization and biogenesis;0.026227181871377!GO:0006979;response to oxidative stress;0.0262323447215544!GO:0043549;regulation of kinase activity;0.0264278292937782!GO:0008610;lipid biosynthetic process;0.0271221141945072!GO:0043241;protein complex disassembly;0.0274163077650986!GO:0006506;GPI anchor biosynthetic process;0.0279561310348722!GO:0000776;kinetochore;0.0282252080082952!GO:0051336;regulation of hydrolase activity;0.0286739506148635!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0292992856851819!GO:0000059;protein import into nucleus, docking;0.0293343182810536!GO:0051540;metal cluster binding;0.0295872523870018!GO:0051536;iron-sulfur cluster binding;0.0295872523870018!GO:0004576;oligosaccharyl transferase activity;0.0299306280504478!GO:0009893;positive regulation of metabolic process;0.0301865134177647!GO:0046128;purine ribonucleoside metabolic process;0.0305179321889769!GO:0042278;purine nucleoside metabolic process;0.0305179321889769!GO:0003711;transcription elongation regulator activity;0.0305530977830266!GO:0051539;4 iron, 4 sulfur cluster binding;0.0305917982275948!GO:0045893;positive regulation of transcription, DNA-dependent;0.0306515588445469!GO:0045859;regulation of protein kinase activity;0.0306736463340679!GO:0004518;nuclease activity;0.0307708397017849!GO:0043281;regulation of caspase activity;0.0309494601730244!GO:0033157;regulation of intracellular protein transport;0.0315690957280775!GO:0042306;regulation of protein import into nucleus;0.0315690957280775!GO:0000139;Golgi membrane;0.031795699602906!GO:0051301;cell division;0.0318641246061645!GO:0030433;ER-associated protein catabolic process;0.0324396073063838!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0324396073063838!GO:0030137;COPI-coated vesicle;0.0324433263868203!GO:0033673;negative regulation of kinase activity;0.0324433263868203!GO:0006469;negative regulation of protein kinase activity;0.0324433263868203!GO:0030663;COPI coated vesicle membrane;0.0324734813913346!GO:0030126;COPI vesicle coat;0.0324734813913346!GO:0032259;methylation;0.0324734813913346!GO:0016790;thiolester hydrolase activity;0.032562960286599!GO:0005765;lysosomal membrane;0.0326790508601394!GO:0007004;telomere maintenance via telomerase;0.0334805531621638!GO:0032508;DNA duplex unwinding;0.0335179426084617!GO:0032392;DNA geometric change;0.0335179426084617!GO:0000303;response to superoxide;0.0335560184819625!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0335765438586479!GO:0010257;NADH dehydrogenase complex assembly;0.0335765438586479!GO:0033108;mitochondrial respiratory chain complex assembly;0.0335765438586479!GO:0001726;ruffle;0.0340037173458891!GO:0051325;interphase;0.0340037173458891!GO:0015036;disulfide oxidoreductase activity;0.0340037173458891!GO:0030118;clathrin coat;0.0342297734893698!GO:0051223;regulation of protein transport;0.0343255070453528!GO:0006497;protein amino acid lipidation;0.0344269119155062!GO:0006595;polyamine metabolic process;0.0344777644507684!GO:0005669;transcription factor TFIID complex;0.034523588289829!GO:0019752;carboxylic acid metabolic process;0.0352572897511008!GO:0006289;nucleotide-excision repair;0.035689887464907!GO:0008170;N-methyltransferase activity;0.0357765954083455!GO:0006144;purine base metabolic process;0.0359666335589288!GO:0005057;receptor signaling protein activity;0.0360471061024631!GO:0030134;ER to Golgi transport vesicle;0.0361387110823391!GO:0006505;GPI anchor metabolic process;0.0363796244137712!GO:0050851;antigen receptor-mediated signaling pathway;0.0378115488925316!GO:0042809;vitamin D receptor binding;0.0381627108217598!GO:0042054;histone methyltransferase activity;0.0384208371714735!GO:0016408;C-acyltransferase activity;0.0384673276991228!GO:0031903;microbody membrane;0.038895793367781!GO:0005778;peroxisomal membrane;0.038895793367781!GO:0030880;RNA polymerase complex;0.0391533176762093!GO:0006082;organic acid metabolic process;0.0392018419459021!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0397106468412819!GO:0007033;vacuole organization and biogenesis;0.040129132208051!GO:0008022;protein C-terminus binding;0.0408342012733766!GO:0050681;androgen receptor binding;0.0410774949091197!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0417166416323032!GO:0003709;RNA polymerase III transcription factor activity;0.0417452020238811!GO:0031461;cullin-RING ubiquitin ligase complex;0.0418293633210007!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0427889110855307!GO:0006644;phospholipid metabolic process;0.0431762851654854!GO:0051235;maintenance of localization;0.0431762851654854!GO:0006919;caspase activation;0.0431762851654854!GO:0046456;icosanoid biosynthetic process;0.0433374488741296!GO:0006275;regulation of DNA replication;0.0438499670565477!GO:0050811;GABA receptor binding;0.0439810243728266!GO:0044452;nucleolar part;0.0440532368929296!GO:0006635;fatty acid beta-oxidation;0.0440577590145892!GO:0005832;chaperonin-containing T-complex;0.0447599710458847!GO:0016605;PML body;0.0448289730972102!GO:0004197;cysteine-type endopeptidase activity;0.0453601706951712!GO:0016581;NuRD complex;0.0460276844350592!GO:0043621;protein self-association;0.0467857229591843!GO:0000209;protein polyubiquitination;0.0468926363839859!GO:0016566;specific transcriptional repressor activity;0.046961039426446!GO:0000726;non-recombinational repair;0.0479085307430147!GO:0043624;cellular protein complex disassembly;0.0482507227601456!GO:0019079;viral genome replication;0.0484824048515517!GO:0000082;G1/S transition of mitotic cell cycle;0.0495354474548385!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0496831481998508!GO:0008250;oligosaccharyl transferase complex;0.0498016707050829
|sample_id=11545
|sample_id=11545
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=ATF4:2.54732666716;TLX2:2.38077513384;HIF1A:2.14879002645;ATF5_CREB3:2.07863516143;CREB1:2.05924196146;FOX{D1,D2}:2.03702916215;FOXN1:2.03570387137;NFKB1_REL_RELA:1.9948624467;RUNX1..3:1.89821364273;ELF1,2,4:1.79463055673;ALX1:1.71295082874;MYB:1.69439530242;GATA6:1.67392892469;RFX1:1.64745009604;DMAP1_NCOR{1,2}_SMARC:1.62603846271;RFX2..5_RFXANK_RFXAP:1.61732979698;TGIF1:1.55964917202;POU2F1..3:1.51377023999;FOX{I1,J2}:1.50446758929;NANOG{mouse}:1.48589495839;SPIB:1.46459662558;ETS1,2:1.38216852422;PAX2:1.34392956598;JUN:1.26440084563;PBX1:1.26193272389;XBP1:1.14241059887;SPI1:1.14082984467;SOX2:1.03841561379;NFATC1..3:1.00533076516;HMX1:0.955726804531;IRF1,2:0.90862044968;ATF2:0.857838296982;STAT5{A,B}:0.850561222097;RXRA_VDR{dimer}:0.833117563951;PAX8:0.763385163929;RORA:0.756267649754;NFE2:0.737998519235;NFIX:0.734850511507;STAT1,3:0.724647235531;BPTF:0.692430739688;MEF2{A,B,C,D}:0.687122582529;FOXO1,3,4:0.672998266209;NFIL3:0.662783760588;ATF6:0.660656544426;FOSL2:0.621297642119;FOX{F1,F2,J1}:0.576278265481;VSX1,2:0.530044684767;STAT2,4,6:0.523481141841;NFE2L1:0.515394056362;BREu{core}:0.510849684752;ESRRA:0.506736601447;EP300:0.47539578864;PDX1:0.465344730811;RXR{A,B,G}:0.437296596232;TBP:0.411981994412;FOXP3:0.385910050112;MAFB:0.385049509916;FOS_FOS{B,L1}_JUN{B,D}:0.35410913263;SOX5:0.349619573505;HSF1,2:0.329282572845;TBX4,5:0.314808407418;PRRX1,2:0.30703911153;CDX1,2,4:0.285959390664;RBPJ:0.278157343086;T:0.255464055382;BACH2:0.249135763994;MYOD1:0.229265147414;CRX:0.223271936652;EGR1..3:0.215321371572;EBF1:0.201026635118;HAND1,2:0.198963443574;YY1:0.196993892364;ZEB1:0.188449134523;FOXQ1:0.164141949717;AR:0.163384206199;TFAP2{A,C}:0.138205256407;FOXA2:0.134312991752;NR5A1,2:0.134094122776;SREBF1,2:0.124761910482;CUX2:0.102463867123;OCT4_SOX2{dimer}:0.0951139159841;ZNF148:0.0872770913357;LEF1_TCF7_TCF7L1,2:0.0730629562144;SMAD1..7,9:0.0588500251618;NANOG:0.055308423923;CEBPA,B_DDIT3:0.0402266916329;ESR1:0.0318636761943;PAX3,7:0.0272462359809;NR6A1:0.0169781646478;ZNF238:0.0139758376198;bHLH_family:0.00984585102344;HLF:-0.023668844218;TFAP4:-0.0299097300609;MTE{core}:-0.0379232882686;ZIC1..3:-0.0428205021312;ELK1,4_GABP{A,B1}:-0.0432597111338;AHR_ARNT_ARNT2:-0.0524192833953;HBP1_HMGB_SSRP1_UBTF:-0.0530256880237;E2F1..5:-0.0817815458997;AIRE:-0.0956659055775;HOXA9_MEIS1:-0.137609824853;PAX5:-0.14289914514;MZF1:-0.154144500525;NKX2-3_NKX2-5:-0.182282772441;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.197045854073;SRF:-0.203252630015;LMO2:-0.236396915261;NFY{A,B,C}:-0.236759968099;PAX6:-0.254326609471;SOX{8,9,10}:-0.256420555367;NHLH1,2:-0.279771848717;ZBTB16:-0.280032744079;IRF7:-0.294462885763;PATZ1:-0.294950878101;MYFfamily:-0.386001196985;MAZ:-0.416044400733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420302134194;PPARG:-0.424862942142;HIC1:-0.441256443155;TFAP2B:-0.44368669512;SNAI1..3:-0.446138823828;HNF1A:-0.461195121955;REST:-0.465167181957;HES1:-0.473958120048;HNF4A_NR2F1,2:-0.489979141922;TAL1_TCF{3,4,12}:-0.493564737596;SOX17:-0.496914817887;EN1,2:-0.503644377598;EVI1:-0.516447058228;NKX6-1,2:-0.539141524721;HOX{A5,B5}:-0.542551437025;POU5F1:-0.57063020458;MYBL2:-0.585294180895;ZNF423:-0.58996936446;ARID5B:-0.613818342011;DBP:-0.630630670015;NFE2L2:-0.631187808727;NKX3-1:-0.64787257483;ZNF143:-0.662677282654;IKZF2:-0.681714987494;MED-1{core}:-0.683571944045;GFI1:-0.699065981226;NKX2-2,8:-0.701018474612;SP1:-0.701737582416;POU3F1..4:-0.710980943991;ZFP161:-0.711342741432;PAX4:-0.714526925233;MTF1:-0.715905419359;TLX1..3_NFIC{dimer}:-0.788066782302;GZF1:-0.812449128192;ALX4:-0.8182082134;ZBTB6:-0.848787739367;ONECUT1,2:-0.851762021804;GLI1..3:-0.855521846962;FOXP1:-0.9596694025;GTF2I:-0.972213789751;NRF1:-0.987057120813;HMGA1,2:-0.998296429988;NKX2-1,4:-1.01784244455;TFDP1:-1.02760997142;LHX3,4:-1.04836384778;XCPE1{core}:-1.10057753211;FOXL1:-1.11679447704;TOPORS:-1.17491952505;HOX{A6,A7,B6,B7}:-1.23666840589;TEAD1:-1.24786235154;TEF:-1.26210900602;PRDM1:-1.26316724961;GATA4:-1.26764912728;TFCP2:-1.35024898705;GTF2A1,2:-1.37626970491;GFI1B:-1.37699213619;TP53:-1.42258617817;FOXM1:-1.42661095641;POU1F1:-1.43637513159;GCM1,2:-1.48500290949;RREB1:-1.52093698196;POU6F1:-1.56952039691;UFEwm:-1.56997852358;PAX1,9:-1.63120770976;HOX{A4,D4}:-1.64717613401;CDC5L:-1.67830433934;IKZF1:-1.6960063716;NR3C1:-1.75280198538;PITX1..3:-1.78818083655;KLF4:-1.79956807343;ADNP_IRX_SIX_ZHX:-1.85344939194;ZNF384:-1.90481340648;NKX3-2:-1.95705299402;NR1H4:-2.41264438164;SPZ1:-2.5036745741;FOXD3:-2.98698733164
|top_motifs=ATF4:2.54732666716;TLX2:2.38077513384;HIF1A:2.14879002645;ATF5_CREB3:2.07863516143;CREB1:2.05924196146;FOX{D1,D2}:2.03702916215;FOXN1:2.03570387137;NFKB1_REL_RELA:1.9948624467;RUNX1..3:1.89821364273;ELF1,2,4:1.79463055673;ALX1:1.71295082874;MYB:1.69439530242;GATA6:1.67392892469;RFX1:1.64745009604;DMAP1_NCOR{1,2}_SMARC:1.62603846271;RFX2..5_RFXANK_RFXAP:1.61732979698;TGIF1:1.55964917202;POU2F1..3:1.51377023999;FOX{I1,J2}:1.50446758929;NANOG{mouse}:1.48589495839;SPIB:1.46459662558;ETS1,2:1.38216852422;PAX2:1.34392956598;JUN:1.26440084563;PBX1:1.26193272389;XBP1:1.14241059887;SPI1:1.14082984467;SOX2:1.03841561379;NFATC1..3:1.00533076516;HMX1:0.955726804531;IRF1,2:0.90862044968;ATF2:0.857838296982;STAT5{A,B}:0.850561222097;RXRA_VDR{dimer}:0.833117563951;PAX8:0.763385163929;RORA:0.756267649754;NFE2:0.737998519235;NFIX:0.734850511507;STAT1,3:0.724647235531;BPTF:0.692430739688;MEF2{A,B,C,D}:0.687122582529;FOXO1,3,4:0.672998266209;NFIL3:0.662783760588;ATF6:0.660656544426;FOSL2:0.621297642119;FOX{F1,F2,J1}:0.576278265481;VSX1,2:0.530044684767;STAT2,4,6:0.523481141841;NFE2L1:0.515394056362;BREu{core}:0.510849684752;ESRRA:0.506736601447;EP300:0.47539578864;PDX1:0.465344730811;RXR{A,B,G}:0.437296596232;TBP:0.411981994412;FOXP3:0.385910050112;MAFB:0.385049509916;FOS_FOS{B,L1}_JUN{B,D}:0.35410913263;SOX5:0.349619573505;HSF1,2:0.329282572845;TBX4,5:0.314808407418;PRRX1,2:0.30703911153;CDX1,2,4:0.285959390664;RBPJ:0.278157343086;T:0.255464055382;BACH2:0.249135763994;MYOD1:0.229265147414;CRX:0.223271936652;EGR1..3:0.215321371572;EBF1:0.201026635118;HAND1,2:0.198963443574;YY1:0.196993892364;ZEB1:0.188449134523;FOXQ1:0.164141949717;AR:0.163384206199;TFAP2{A,C}:0.138205256407;FOXA2:0.134312991752;NR5A1,2:0.134094122776;SREBF1,2:0.124761910482;CUX2:0.102463867123;OCT4_SOX2{dimer}:0.0951139159841;ZNF148:0.0872770913357;LEF1_TCF7_TCF7L1,2:0.0730629562144;SMAD1..7,9:0.0588500251618;NANOG:0.055308423923;CEBPA,B_DDIT3:0.0402266916329;ESR1:0.0318636761943;PAX3,7:0.0272462359809;NR6A1:0.0169781646478;ZNF238:0.0139758376198;bHLH_family:0.00984585102344;HLF:-0.023668844218;TFAP4:-0.0299097300609;MTE{core}:-0.0379232882686;ZIC1..3:-0.0428205021312;ELK1,4_GABP{A,B1}:-0.0432597111338;AHR_ARNT_ARNT2:-0.0524192833953;HBP1_HMGB_SSRP1_UBTF:-0.0530256880237;E2F1..5:-0.0817815458997;AIRE:-0.0956659055775;HOXA9_MEIS1:-0.137609824853;PAX5:-0.14289914514;MZF1:-0.154144500525;NKX2-3_NKX2-5:-0.182282772441;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.197045854073;SRF:-0.203252630015;LMO2:-0.236396915261;NFY{A,B,C}:-0.236759968099;PAX6:-0.254326609471;SOX{8,9,10}:-0.256420555367;NHLH1,2:-0.279771848717;ZBTB16:-0.280032744079;IRF7:-0.294462885763;PATZ1:-0.294950878101;MYFfamily:-0.386001196985;MAZ:-0.416044400733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.420302134194;PPARG:-0.424862942142;HIC1:-0.441256443155;TFAP2B:-0.44368669512;SNAI1..3:-0.446138823828;HNF1A:-0.461195121955;REST:-0.465167181957;HES1:-0.473958120048;HNF4A_NR2F1,2:-0.489979141922;TAL1_TCF{3,4,12}:-0.493564737596;SOX17:-0.496914817887;EN1,2:-0.503644377598;EVI1:-0.516447058228;NKX6-1,2:-0.539141524721;HOX{A5,B5}:-0.542551437025;POU5F1:-0.57063020458;MYBL2:-0.585294180895;ZNF423:-0.58996936446;ARID5B:-0.613818342011;DBP:-0.630630670015;NFE2L2:-0.631187808727;NKX3-1:-0.64787257483;ZNF143:-0.662677282654;IKZF2:-0.681714987494;MED-1{core}:-0.683571944045;GFI1:-0.699065981226;NKX2-2,8:-0.701018474612;SP1:-0.701737582416;POU3F1..4:-0.710980943991;ZFP161:-0.711342741432;PAX4:-0.714526925233;MTF1:-0.715905419359;TLX1..3_NFIC{dimer}:-0.788066782302;GZF1:-0.812449128192;ALX4:-0.8182082134;ZBTB6:-0.848787739367;ONECUT1,2:-0.851762021804;GLI1..3:-0.855521846962;FOXP1:-0.9596694025;GTF2I:-0.972213789751;NRF1:-0.987057120813;HMGA1,2:-0.998296429988;NKX2-1,4:-1.01784244455;TFDP1:-1.02760997142;LHX3,4:-1.04836384778;XCPE1{core}:-1.10057753211;FOXL1:-1.11679447704;TOPORS:-1.17491952505;HOX{A6,A7,B6,B7}:-1.23666840589;TEAD1:-1.24786235154;TEF:-1.26210900602;PRDM1:-1.26316724961;GATA4:-1.26764912728;TFCP2:-1.35024898705;GTF2A1,2:-1.37626970491;GFI1B:-1.37699213619;TP53:-1.42258617817;FOXM1:-1.42661095641;POU1F1:-1.43637513159;GCM1,2:-1.48500290949;RREB1:-1.52093698196;POU6F1:-1.56952039691;UFEwm:-1.56997852358;PAX1,9:-1.63120770976;HOX{A4,D4}:-1.64717613401;CDC5L:-1.67830433934;IKZF1:-1.6960063716;NR3C1:-1.75280198538;PITX1..3:-1.78818083655;KLF4:-1.79956807343;ADNP_IRX_SIX_ZHX:-1.85344939194;ZNF384:-1.90481340648;NKX3-2:-1.95705299402;NR1H4:-2.41264438164;SPZ1:-2.5036745741;FOXD3:-2.98698733164
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11545-120B6;search_select_hide=table117:FF:11545-120B6
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:CD34+ Progenitors, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13227
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typehematopoietic stem cell, CD34+
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number3H100-60-5
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005368
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13227 CAGE DRX008058 DRR008930
Accession ID Hg19

Library idBAMCTSS
CNhs13227 DRZ000355 DRZ001740
Accession ID Hg38

Library idBAMCTSS
CNhs13227 DRZ011705 DRZ013090
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.243
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.366
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.329
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.519
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.435
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.286
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.366
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.125
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.366
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.282
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.637
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.492
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.286
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.562
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.338
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.681
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.3
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.449
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.381
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.505
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.366
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13227

Jaspar motifP-value
MA0002.21.10396e-7
MA0003.10.331
MA0004.10.664
MA0006.10.333
MA0007.10.39
MA0009.10.897
MA0014.10.965
MA0017.10.967
MA0018.21.7311e-11
MA0019.10.89
MA0024.10.924
MA0025.14.31339e-5
MA0027.10.648
MA0028.10.0327
MA0029.10.161
MA0030.12.66324e-4
MA0031.13.48666e-4
MA0035.27.51241e-5
MA0038.10.369
MA0039.20.312
MA0040.10.0118
MA0041.10.065
MA0042.10.0444
MA0043.17.65114e-12
MA0046.10.638
MA0047.20.0483
MA0048.10.572
MA0050.12.28765e-5
MA0051.15.44299e-4
MA0052.14.44722e-5
MA0055.10.629
MA0057.10.268
MA0058.10.69
MA0059.10.985
MA0060.10.807
MA0061.12.45653e-19
MA0062.21.47048e-9
MA0065.20.232
MA0066.10.591
MA0067.12.94381e-7
MA0068.14.80945e-4
MA0069.10.0878
MA0070.10.938
MA0071.10.737
MA0072.10.639
MA0073.10.242
MA0074.10.968
MA0076.10.00383
MA0077.10.608
MA0078.10.31
MA0079.20.398
MA0080.22.79502e-14
MA0081.12.95621e-4
MA0083.10.589
MA0084.10.297
MA0087.10.805
MA0088.10.836
MA0090.14.35626e-4
MA0091.10.483
MA0092.10.703
MA0093.10.718
MA0099.26.9392e-8
MA0100.10.00113
MA0101.15.87277e-24
MA0102.26.18505e-5
MA0103.10.45
MA0104.20.0378
MA0105.11.67038e-10
MA0106.10.0877
MA0107.14.52226e-24
MA0108.20.68
MA0111.10.402
MA0112.20.76
MA0113.10.269
MA0114.10.942
MA0115.10.286
MA0116.10.0269
MA0117.10.014
MA0119.10.596
MA0122.10.311
MA0124.10.708
MA0125.10.447
MA0131.10.283
MA0135.10.592
MA0136.12.06507e-19
MA0137.20.0321
MA0138.20.155
MA0139.10.7
MA0140.12.13483e-5
MA0141.10.377
MA0142.10.395
MA0143.10.687
MA0144.10.292
MA0145.10.432
MA0146.10.764
MA0147.10.0754
MA0148.10.149
MA0149.10.943
MA0150.16.82401e-6
MA0152.10.165
MA0153.10.377
MA0154.10.00291
MA0155.10.247
MA0156.18.75163e-17
MA0157.10.0623
MA0159.10.746
MA0160.10.0646
MA0162.10.912
MA0163.17.41339e-4
MA0164.10.584
MA0258.10.56
MA0259.10.673



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13227

Novel motifP-value
10.672
100.125
1000.389
1010.627
1020.885
1030.185
1040.424
1050.446
1060.00505
1070.273
1080.216
1090.321
110.599
1100.564
1110.14
1120.892
1130.366
1140.606
1150.262
1160.297
1170.0039
1180.114
1190.372
120.285
1200.592
1210.529
1220.345
1230.546
1240.903
1250.939
1260.298
1270.798
1280.451
1290.867
130.153
1300.691
1310.579
1320.0192
1330.0297
1340.598
1350.873
1360.359
1370.00204
1380.771
1390.413
140.85
1400.47
1410.821
1420.862
1430.13
1440.721
1450.281
1460.86
1470.0656
1480.815
1490.866
150.402
1500.654
1510.562
1520.258
1530.866
1540.811
1550.0354
1560.307
1570.309
1580.0586
1590.129
160.596
1600.476
1610.364
1620.0798
1630.866
1640.587
1650.35
1660.526
1670.221
1680.755
1690.339
170.822
180.723
190.187
20.326
200.35
210.247
220.953
230.952
240.935
250.35
260.968
270.748
280.371
290.134
30.647
300.422
310.662
320.0138
330.291
340.776
350.258
360.156
370.00893
380.784
390.739
40.592
400.69
410.0984
420.436
430.702
440.372
450.938
460.764
470.747
480.918
490.541
50.544
500.985
510.518
520.682
530.672
540.662
550.463
560.978
570.528
580.288
590.563
60.272
600.343
610.0767
620.214
630.634
640.87
650.596
660.912
670.656
680.975
690.215
70.5
700.691
710.166
720.141
730.123
740.528
750.186
760.303
770.0784
780.965
790.0633
80.341
800.0206
810.814
820.107
830.0033
840.322
850.953
860.0284
870.0556
880.518
890.106
90.306
900.983
910.783
920.949
930.511
940.377
950.0022
960.63
970.967
980.487
995.00058e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13227


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000021 (hematopoietic stem cell sample)
0000026 (human CD34-positive hematopoietic stem cell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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