FF:11698-123A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004705 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008348;DRR009220;DRZ000645;DRZ002030;DRZ011995;DRZ013380 | ||
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000096 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor3.CNhs12922.11698-123A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor3.CNhs12922.11698-123A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor3.CNhs12922.11698-123A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor3.CNhs12922.11698-123A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor3.CNhs12922.11698-123A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11698-123A6 | |id=FF:11698-123A6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000096 | ||
|is_obsolete= | |||
|library_id=CNhs12922 | |||
|library_id_phase_based=2:CNhs12922 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11698 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11698 | |||
|name=Mesenchymal Stem Cells - adipose, donor3 | |name=Mesenchymal Stem Cells - adipose, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12922,LSID974,release012,COMPLETED | |profile_hcage=CNhs12922,LSID974,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.10574959947526,0,0.861238236364936,0.0383935246253679,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9827485242226,0,0,0,0,0,-0.0979578962680575,0,0,0.133111039782784,0,0,0,0,0,0,0,0,0,0,0,0,0.6586719463418,0,0.266067629561646,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.169075268319041,0,0,0.168724002348549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00407066094297759,0,0,0,-0.075192324722459,0.109599682506441,0,0,0.133033814780823,0,0.168032278323939,0.135773293361503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.689804937550389,0.826950091921933,0,0.266067629561646,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.168032278323939,0,0,0,0,0,0,0,0,0,0,0,0.0188887542760814,0,0.167507951652611,-0.143515142523472,0,0,0.285177317847362,0,0,0,0,0,0,0,0,0,0.301730159494836,0,0.215655077972331,0,0,0,0,0,-0.305472230898407,0,0.1465390240528,-0.0683442610773682,0,0,0,0,0.183590230648808,0,-0.120879483793741,-0.0827201683234173,0,0.0443562955250678,-0.055712496781182,0,0,0,0.0603643287932805,-0.300166815048364,0,0,0.0112539630289491,-0.181349618560659,0,0,0.32716751679289,0,-0.0113748332362129,0.0264967047383179,0,0.382556907865042,0,0,0,0,0,0,0,0,0,0,0,0.0755403479593865,-0.060920967117323,0,0,0,0,-0.117080474634732,0.266067629561646,0,0.63948066003175,0.197764975027937,-0.138343337599972,-0.28260101024218,0,-0.0363220974482674,-0.0591403786668315,-0.0089856281156682,-0.23647913833208,0.118665780190507,0.0760859100117985,0.0141060083208386,-0.00845076674045797,-0.237771640789216,-0.0962207084982611,0.171998900608514,-0.0262880684879323,0.0215914070848486,-0.241876245286256,0,0,0.142640818111553,0.0181748518718159,0,-0.117585124040174,-0.0602646880293731,-0.027591696827523,-0.183201975233239,-0.0855202316944582,-0.0118379003192827,0.370718135464856,-0.0395325284566706,-0.191368823334949,0.00221147956326045,0.234974890859203,0,0,-0.078689067265648,-0.0420118584407915,0.104085143274191,0.319062199052027,0,-0.217909832249335,-0.0683442610773682,0,-0.120569577664069,-0.0258656045637853,0,0,-0.312709601309766,0,0,0.206779072235298,0,0,0.12818675360087,-0.539492143030166,-0.232855561555545,0,-0.158453562118979,0,-0.0823610671288865,0,-0.202350502993506,0.109389945797421,-0.0626726525471657,-0.332099669787769,0,0.127983425955157,0.0215502293964112,-0.164990696339003,0.219199365012882,-0.0584468268118252,-0.0888777633711116,-0.15987966342553,-0.299362430803091,0.101057385591287,-0.0935943406593905,0.177940797086358,-0.162838994271326,0.0513436217123263,-0.0379039612169049,-0.0380719278124948,-0.0350289159047761,0,0.0309800574585328,0,-0.165703500460043,0,-0.161754032322346,0.472333064515077,-0.439289374580686,0.0354906716023009,0,-0.00466441405992635,0.146757434456732,0,0.0824784512349579,-0.0115213549363125,0,0.115700546227007,-0.0561017961079631,-0.211650427864589,0.268294852264026,0,0.256946643574502,0,0,0.145996786837354,0.406118132640231,0,0.152967883407309,-0.0607019258886006,0.371354881289652,0.313878953012466,0.83992526403213,0,-0.379632708431079,0,0,-0.60592806381803,0,-0.0712823356338378,0.29517464683804,0,0.15744482010739,0,0,-0.177527765965176,0,0.0256233579227876,0,0.266067629561646,0.195117328591933,0.149439516571513,0,0,0,-0.0622318757769415,0,0,0,0,0,0,0,0.00154149859837083,-0.0887657006548021,0,0.130396135520783,0,0,0,0,0,0,0,0,0.216539561188406,0,-0.12301741567642,0,0,0,0,-0.215723402553475,0.0628310674669221,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,0.490770531271132,0.838581061605965,0,0,0,0.271546586723005,0,0,0,0,-0.0984346921864893,0,0,0.446850460589513,0,-0.207723305381262,-0.0815818795468414,0,-0.284830226963349,0.00109485969510503,-0.147508862755932,0,0,0.00472049777175831,0,0,0.0110824803309106,0.0515384575775397,0,-0.0209247759461169,0,0,0,0,0,0.266067629561646,-0.214314512399756,0.0692578455970925,0,0,0,0,0,0,0,0,0,0,-0.115761629479056,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.0610839361290333,0,0,0,0,0,0,0,0,0.170168230741377,0,0,0.266067629561646,0,0,0.169075268319041,0,0,0,0,0.0767870492507357,0,0,0.698208790291433,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.929354984496733,0,0,0,0,0,0,0,0.861238236364936,0,0,0,0,1.75355975896695,0,0,0,0.161271244772489,0,0.10574959947526,0,0,0.548500988324796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2149250132237,0.133033814780823,0,0,0.340383247913249,0,0.108626240907448,-0.0876006383020803,0,0,0.0416221415293561,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0.0882313004279278,0,-0.154943025875886,0.294812040148432,-0.0196102339905047,0,0,0,0.078648242298368,0,0,0,0,-0.0667773874189013,0.266067629561646,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9827485242226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266067629561646,0,0,0,0,0.133033814780823,0,0,0.266067629561646,0,0.347958828004523,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349831558178762,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377889772158851,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.464124356094769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339493207865802,0,0,0,0,-0.0476371106609188,0,0.133033814780823,0,0,0,0,0.4298500264474,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176239418158895,0,0,1.00974873509068,0,0,0,0,0,0,0,0,0,0,0,0,0.368529847297274,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.20992899325841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.669336656750346,0.826950091921933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC7515 | |rna_catalog_number=SC7515 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.97577724317605e-221!GO:0005737;cytoplasm;2.80467583361581e-190!GO:0043231;intracellular membrane-bound organelle;3.87910015606728e-174!GO:0043226;organelle;6.66765428020189e-174!GO:0043227;membrane-bound organelle;7.14866762941538e-174!GO:0043229;intracellular organelle;1.15084467623287e-173!GO:0044422;organelle part;1.98529764251368e-156!GO:0044446;intracellular organelle part;5.28166017681425e-155!GO:0044444;cytoplasmic part;7.08529796671178e-143!GO:0032991;macromolecular complex;1.17145422964817e-112!GO:0030529;ribonucleoprotein complex;1.37841071414277e-96!GO:0044237;cellular metabolic process;3.20099344713616e-82!GO:0005739;mitochondrion;6.39630800584344e-82!GO:0044238;primary metabolic process;9.49959602242138e-80!GO:0043233;organelle lumen;6.67716727719077e-79!GO:0031974;membrane-enclosed lumen;6.67716727719077e-79!GO:0005515;protein binding;9.26316182488561e-75!GO:0044428;nuclear part;1.87260770401586e-73!GO:0043170;macromolecule metabolic process;9.48567687965612e-72!GO:0003723;RNA binding;2.88183444663745e-68!GO:0005840;ribosome;1.03011069195222e-61!GO:0005634;nucleus;1.28806551098778e-58!GO:0006412;translation;8.59458891927085e-58!GO:0043234;protein complex;1.97669575994177e-56!GO:0044429;mitochondrial part;1.42486168200747e-54!GO:0003735;structural constituent of ribosome;1.54604018963153e-53!GO:0019538;protein metabolic process;4.39780898197671e-53!GO:0006396;RNA processing;1.68955378782092e-52!GO:0031090;organelle membrane;7.34226458278859e-52!GO:0009058;biosynthetic process;1.77655426499604e-50!GO:0044249;cellular biosynthetic process;1.48364709014856e-48!GO:0016043;cellular component organization and biogenesis;1.41626806794106e-47!GO:0044260;cellular macromolecule metabolic process;3.66488782664764e-47!GO:0044267;cellular protein metabolic process;6.10922704177688e-47!GO:0031967;organelle envelope;1.19214013365003e-46!GO:0031975;envelope;2.99368008111998e-46!GO:0009059;macromolecule biosynthetic process;6.61067157787304e-46!GO:0033279;ribosomal subunit;1.10266996877623e-45!GO:0031981;nuclear lumen;1.50767078106713e-42!GO:0005829;cytosol;2.77647886322277e-41!GO:0015031;protein transport;9.81831703210345e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.1863586373386e-38!GO:0043228;non-membrane-bound organelle;6.66352053569271e-38!GO:0043232;intracellular non-membrane-bound organelle;6.66352053569271e-38!GO:0033036;macromolecule localization;1.45258332362658e-37!GO:0065003;macromolecular complex assembly;4.17785948897372e-36!GO:0045184;establishment of protein localization;7.55651104080974e-36!GO:0016071;mRNA metabolic process;1.16618941944529e-35!GO:0008104;protein localization;9.48313774259538e-35!GO:0005740;mitochondrial envelope;9.83276882503057e-35!GO:0008380;RNA splicing;5.10206833011428e-34!GO:0006996;organelle organization and biogenesis;5.80472071833394e-34!GO:0043283;biopolymer metabolic process;6.89195795961985e-33!GO:0046907;intracellular transport;1.48398042442017e-32!GO:0031966;mitochondrial membrane;3.65746823580647e-32!GO:0006259;DNA metabolic process;4.28059310100889e-32!GO:0022607;cellular component assembly;5.34589808534686e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.40397511490003e-32!GO:0006397;mRNA processing;2.78617607066042e-31!GO:0019866;organelle inner membrane;3.23025009379148e-31!GO:0005743;mitochondrial inner membrane;1.2982944663286e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.49747028746764e-29!GO:0006886;intracellular protein transport;6.20209691503748e-28!GO:0010467;gene expression;1.29526196171313e-27!GO:0007049;cell cycle;3.94025165803847e-26!GO:0005681;spliceosome;5.07694884252155e-25!GO:0044445;cytosolic part;7.32103377798881e-25!GO:0015934;large ribosomal subunit;1.50096720639846e-24!GO:0031980;mitochondrial lumen;2.99998676645347e-24!GO:0005759;mitochondrial matrix;2.99998676645347e-24!GO:0005654;nucleoplasm;9.88812676038482e-24!GO:0044455;mitochondrial membrane part;2.40543221585914e-23!GO:0006119;oxidative phosphorylation;2.78689843726351e-23!GO:0000278;mitotic cell cycle;2.87507465173052e-22!GO:0015935;small ribosomal subunit;3.41878891479487e-22!GO:0006457;protein folding;3.49629081811157e-22!GO:0000166;nucleotide binding;5.38477427763709e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.42013133345629e-21!GO:0016462;pyrophosphatase activity;1.42013133345629e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.09683759312277e-21!GO:0022402;cell cycle process;2.91817865063945e-21!GO:0012505;endomembrane system;5.76894717731692e-21!GO:0005730;nucleolus;8.55554269237173e-21!GO:0017111;nucleoside-triphosphatase activity;2.06727374193247e-20!GO:0051649;establishment of cellular localization;6.42984655274827e-20!GO:0051641;cellular localization;7.69993473134471e-20!GO:0005783;endoplasmic reticulum;9.28009645894808e-20!GO:0022618;protein-RNA complex assembly;2.22987735327871e-19!GO:0042254;ribosome biogenesis and assembly;2.55469646622203e-19!GO:0005746;mitochondrial respiratory chain;7.76411127342487e-19!GO:0051186;cofactor metabolic process;8.55042841361906e-19!GO:0044451;nucleoplasm part;1.11819765299461e-18!GO:0005694;chromosome;2.00994013699268e-18!GO:0006974;response to DNA damage stimulus;2.72054386910845e-18!GO:0005761;mitochondrial ribosome;3.17514596473331e-18!GO:0000313;organellar ribosome;3.17514596473331e-18!GO:0000502;proteasome complex (sensu Eukaryota);7.1610533639516e-18!GO:0048770;pigment granule;1.2264869983196e-17!GO:0042470;melanosome;1.2264869983196e-17!GO:0044432;endoplasmic reticulum part;1.2264869983196e-17!GO:0000087;M phase of mitotic cell cycle;2.43318657861961e-17!GO:0044427;chromosomal part;2.53764900921461e-17!GO:0007067;mitosis;2.92195865587797e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.27079018030643e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.17457750252829e-16!GO:0022403;cell cycle phase;1.38274310190842e-16!GO:0008135;translation factor activity, nucleic acid binding;1.45952633509614e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.30534450286648e-16!GO:0003954;NADH dehydrogenase activity;4.30534450286648e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.30534450286648e-16!GO:0017076;purine nucleotide binding;4.67839517755508e-16!GO:0032553;ribonucleotide binding;1.0472311217423e-15!GO:0032555;purine ribonucleotide binding;1.0472311217423e-15!GO:0051082;unfolded protein binding;1.39037405311176e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.49187064306451e-15!GO:0043285;biopolymer catabolic process;2.50128109050757e-15!GO:0006281;DNA repair;2.78346048500557e-15!GO:0044265;cellular macromolecule catabolic process;1.01858217192613e-14!GO:0009057;macromolecule catabolic process;1.26263689117253e-14!GO:0006605;protein targeting;1.75601232872719e-14!GO:0006260;DNA replication;1.99554591832347e-14!GO:0016874;ligase activity;2.01708540754695e-14!GO:0006732;coenzyme metabolic process;2.11395507058347e-14!GO:0044248;cellular catabolic process;2.60116295581127e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.4512669715763e-14!GO:0042773;ATP synthesis coupled electron transport;3.4512669715763e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.46422639435714e-14!GO:0009719;response to endogenous stimulus;3.8454232313754e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.61259938665736e-14!GO:0045271;respiratory chain complex I;4.61259938665736e-14!GO:0005747;mitochondrial respiratory chain complex I;4.61259938665736e-14!GO:0051301;cell division;5.56168652388574e-14!GO:0000279;M phase;6.53791750250442e-14!GO:0005794;Golgi apparatus;1.2253946537176e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.4682634269245e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.34804468369615e-13!GO:0000375;RNA splicing, via transesterification reactions;2.34804468369615e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.34804468369615e-13!GO:0006364;rRNA processing;2.4485132636029e-13!GO:0005524;ATP binding;3.5608890012129e-13!GO:0003743;translation initiation factor activity;3.92342088982016e-13!GO:0006413;translational initiation;4.48880612825224e-13!GO:0030554;adenyl nucleotide binding;4.68759903264043e-13!GO:0003676;nucleic acid binding;5.61847891296136e-13!GO:0008134;transcription factor binding;6.54804066396916e-13!GO:0032559;adenyl ribonucleotide binding;7.17588246443976e-13!GO:0065004;protein-DNA complex assembly;8.10705593703091e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.47662712132298e-13!GO:0016072;rRNA metabolic process;8.9706858703422e-13!GO:0030163;protein catabolic process;9.48850177911725e-13!GO:0005635;nuclear envelope;1.16971997864098e-12!GO:0051276;chromosome organization and biogenesis;1.17433202335977e-12!GO:0019941;modification-dependent protein catabolic process;1.33751926107412e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.33751926107412e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.50910973252624e-12!GO:0044257;cellular protein catabolic process;1.50910973252624e-12!GO:0006399;tRNA metabolic process;2.13019890433465e-12!GO:0006512;ubiquitin cycle;2.47588609751635e-12!GO:0048193;Golgi vesicle transport;3.04537278160024e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.04537278160024e-12!GO:0009055;electron carrier activity;6.7881044166599e-12!GO:0006334;nucleosome assembly;8.26032798032959e-12!GO:0005789;endoplasmic reticulum membrane;8.68900952003242e-12!GO:0005793;ER-Golgi intermediate compartment;9.2024604193843e-12!GO:0009259;ribonucleotide metabolic process;9.62512048963049e-12!GO:0044453;nuclear membrane part;1.20214651349197e-11!GO:0000074;regulation of progression through cell cycle;1.89426229375067e-11!GO:0016887;ATPase activity;1.89426229375067e-11!GO:0006333;chromatin assembly or disassembly;1.9657271548434e-11!GO:0051726;regulation of cell cycle;1.98057535649839e-11!GO:0042623;ATPase activity, coupled;2.56656851981918e-11!GO:0031965;nuclear membrane;2.81267880451029e-11!GO:0006163;purine nucleotide metabolic process;3.90259343726859e-11!GO:0000785;chromatin;4.31527242600288e-11!GO:0006446;regulation of translational initiation;8.12720515779852e-11!GO:0031497;chromatin assembly;9.69793219335898e-11!GO:0065002;intracellular protein transport across a membrane;1.24495170054535e-10!GO:0009260;ribonucleotide biosynthetic process;1.46195547144528e-10!GO:0043412;biopolymer modification;1.49010406932684e-10!GO:0009150;purine ribonucleotide metabolic process;1.84498571303751e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.95330041931393e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.18174205852092e-10!GO:0006164;purine nucleotide biosynthetic process;2.23217024163587e-10!GO:0005643;nuclear pore;6.510401108312e-10!GO:0006323;DNA packaging;6.95716258642865e-10!GO:0012501;programmed cell death;6.97066884879351e-10!GO:0006913;nucleocytoplasmic transport;9.11192663416133e-10!GO:0016491;oxidoreductase activity;1.03078154690292e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.04479951527875e-09!GO:0006915;apoptosis;1.29360217194581e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.60649752135309e-09!GO:0016604;nuclear body;1.87859866941502e-09!GO:0051188;cofactor biosynthetic process;1.96723434496514e-09!GO:0008565;protein transporter activity;2.03631242294519e-09!GO:0051169;nuclear transport;2.23675688958668e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.42675027737843e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.51925378440744e-09!GO:0009141;nucleoside triphosphate metabolic process;3.03399235739838e-09!GO:0009117;nucleotide metabolic process;5.38567665881036e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.42834040701298e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.42834040701298e-09!GO:0006464;protein modification process;6.07395122662435e-09!GO:0016192;vesicle-mediated transport;6.21503411442292e-09!GO:0005788;endoplasmic reticulum lumen;6.97521390835128e-09!GO:0006461;protein complex assembly;8.23034004090861e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.23034004090861e-09!GO:0008219;cell death;8.23034004090861e-09!GO:0016265;death;8.23034004090861e-09!GO:0009060;aerobic respiration;1.20710798475321e-08!GO:0009056;catabolic process;1.29932923609074e-08!GO:0046930;pore complex;1.3107837970927e-08!GO:0003697;single-stranded DNA binding;1.32977043636633e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.4988593177257e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.4988593177257e-08!GO:0017038;protein import;1.7025247882032e-08!GO:0007005;mitochondrion organization and biogenesis;1.72147160552193e-08!GO:0015986;ATP synthesis coupled proton transport;2.00624621919513e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.00624621919513e-08!GO:0003712;transcription cofactor activity;2.11937464137795e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.43933285499241e-08!GO:0045333;cellular respiration;2.62368707871383e-08!GO:0004386;helicase activity;2.91514417855591e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.01350490232407e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.01350490232407e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.01350490232407e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.18708649896185e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.18708649896185e-08!GO:0046034;ATP metabolic process;3.91070039525134e-08!GO:0050657;nucleic acid transport;4.36771488008916e-08!GO:0051236;establishment of RNA localization;4.36771488008916e-08!GO:0050658;RNA transport;4.36771488008916e-08!GO:0006403;RNA localization;4.94275772943832e-08!GO:0051246;regulation of protein metabolic process;5.46275139967269e-08!GO:0043038;amino acid activation;5.50998605403887e-08!GO:0006418;tRNA aminoacylation for protein translation;5.50998605403887e-08!GO:0043039;tRNA aminoacylation;5.50998605403887e-08!GO:0016779;nucleotidyltransferase activity;5.93798309579351e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.29820226871714e-08!GO:0008026;ATP-dependent helicase activity;7.60852407199279e-08!GO:0019829;cation-transporting ATPase activity;7.83585589706078e-08!GO:0016070;RNA metabolic process;8.31355973325114e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.15934110234409e-07!GO:0043566;structure-specific DNA binding;1.16471742631051e-07!GO:0016787;hydrolase activity;1.29194730745377e-07!GO:0016853;isomerase activity;1.48508443953355e-07!GO:0000786;nucleosome;1.62135132900369e-07!GO:0015630;microtubule cytoskeleton;1.69924904404457e-07!GO:0006754;ATP biosynthetic process;2.04691545004062e-07!GO:0006753;nucleoside phosphate metabolic process;2.04691545004062e-07!GO:0005819;spindle;2.05152320592941e-07!GO:0006366;transcription from RNA polymerase II promoter;2.10844793744617e-07!GO:0008639;small protein conjugating enzyme activity;2.19933041686047e-07!GO:0048523;negative regulation of cellular process;2.23946784548853e-07!GO:0016740;transferase activity;2.56577110715943e-07!GO:0043687;post-translational protein modification;3.22644675274493e-07!GO:0006261;DNA-dependent DNA replication;3.92238954092585e-07!GO:0009108;coenzyme biosynthetic process;4.00268112511593e-07!GO:0051187;cofactor catabolic process;4.57786995765328e-07!GO:0019787;small conjugating protein ligase activity;4.63954872313261e-07!GO:0005762;mitochondrial large ribosomal subunit;4.78224687493249e-07!GO:0000315;organellar large ribosomal subunit;4.78224687493249e-07!GO:0004842;ubiquitin-protein ligase activity;4.80023682249548e-07!GO:0016607;nuclear speck;4.87328768837178e-07!GO:0006099;tricarboxylic acid cycle;5.31465853236783e-07!GO:0046356;acetyl-CoA catabolic process;5.31465853236783e-07!GO:0045259;proton-transporting ATP synthase complex;6.93434718524073e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.00011788004587e-07!GO:0006091;generation of precursor metabolites and energy;7.3714386931363e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.87503462274385e-07!GO:0006084;acetyl-CoA metabolic process;7.91954365828548e-07!GO:0030120;vesicle coat;7.96832344319461e-07!GO:0030662;coated vesicle membrane;7.96832344319461e-07!GO:0003924;GTPase activity;8.44923870303962e-07!GO:0004298;threonine endopeptidase activity;1.06481813584848e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10628741383267e-06!GO:0051329;interphase of mitotic cell cycle;1.16128758742662e-06!GO:0009109;coenzyme catabolic process;1.67651088963044e-06!GO:0051028;mRNA transport;1.82257400672752e-06!GO:0006950;response to stress;2.03155589705095e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.43206194524952e-06!GO:0006752;group transfer coenzyme metabolic process;2.62851232220788e-06!GO:0016881;acid-amino acid ligase activity;3.2308207840616e-06!GO:0003899;DNA-directed RNA polymerase activity;3.23584551440012e-06!GO:0005813;centrosome;3.30387083510485e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.32450328682157e-06!GO:0044431;Golgi apparatus part;3.4015670958094e-06!GO:0051325;interphase;4.01102337458583e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.19676983286014e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.29722086175892e-06!GO:0016859;cis-trans isomerase activity;5.15142719523332e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.3103662660225e-06!GO:0048519;negative regulation of biological process;6.06793082890325e-06!GO:0000245;spliceosome assembly;6.83056557252648e-06!GO:0000775;chromosome, pericentric region;6.92300952326232e-06!GO:0048475;coated membrane;7.45057041525737e-06!GO:0030117;membrane coat;7.45057041525737e-06!GO:0005815;microtubule organizing center;7.95848117014958e-06!GO:0005667;transcription factor complex;9.75797260478465e-06!GO:0009165;nucleotide biosynthetic process;1.10366176793068e-05!GO:0042981;regulation of apoptosis;1.19919567875186e-05!GO:0000314;organellar small ribosomal subunit;1.22663033009804e-05!GO:0005763;mitochondrial small ribosomal subunit;1.22663033009804e-05!GO:0005525;GTP binding;1.37921320158159e-05!GO:0007051;spindle organization and biogenesis;1.40924436652044e-05!GO:0008654;phospholipid biosynthetic process;1.40924436652044e-05!GO:0043067;regulation of programmed cell death;1.48958553326362e-05!GO:0045454;cell redox homeostasis;1.48958553326362e-05!GO:0008033;tRNA processing;1.58718065158529e-05!GO:0006613;cotranslational protein targeting to membrane;1.63167691666315e-05!GO:0043069;negative regulation of programmed cell death;1.6805412012759e-05!GO:0006793;phosphorus metabolic process;2.03839679901408e-05!GO:0006796;phosphate metabolic process;2.03839679901408e-05!GO:0043066;negative regulation of apoptosis;2.07102018021657e-05!GO:0051170;nuclear import;2.25974751362427e-05!GO:0031252;leading edge;2.67485772852443e-05!GO:0005768;endosome;2.80867741719679e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.19466379902735e-05!GO:0043623;cellular protein complex assembly;3.48281471583247e-05!GO:0000075;cell cycle checkpoint;4.28439705215658e-05!GO:0032446;protein modification by small protein conjugation;4.35355183964755e-05!GO:0003724;RNA helicase activity;4.42465334892241e-05!GO:0005657;replication fork;5.29630250858375e-05!GO:0016567;protein ubiquitination;5.61802393285154e-05!GO:0016310;phosphorylation;5.62401824108732e-05!GO:0006606;protein import into nucleus;5.63319420539838e-05!GO:0044452;nucleolar part;5.7109891614624e-05!GO:0006916;anti-apoptosis;5.82264646990152e-05!GO:0000139;Golgi membrane;5.82264646990152e-05!GO:0043681;protein import into mitochondrion;6.2952468691585e-05!GO:0043021;ribonucleoprotein binding;6.42794225097986e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.45117497227795e-05!GO:0005770;late endosome;6.95046834695383e-05!GO:0030867;rough endoplasmic reticulum membrane;6.9853078217831e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.9853078217831e-05!GO:0006626;protein targeting to mitochondrion;6.9853078217831e-05!GO:0031988;membrane-bound vesicle;7.56211735240067e-05!GO:0008361;regulation of cell size;8.3559523217139e-05!GO:0003714;transcription corepressor activity;0.000100257901387639!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103939964604888!GO:0016049;cell growth;0.000105269357489862!GO:0001558;regulation of cell growth;0.000111106521203427!GO:0051087;chaperone binding;0.000114338956149688!GO:0031968;organelle outer membrane;0.000114478954379328!GO:0045786;negative regulation of progression through cell cycle;0.000124454065880806!GO:0031324;negative regulation of cellular metabolic process;0.000129284948604329!GO:0032561;guanyl ribonucleotide binding;0.000143180896227309!GO:0019001;guanyl nucleotide binding;0.000143180896227309!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000144613503957916!GO:0019867;outer membrane;0.000158189879170922!GO:0006612;protein targeting to membrane;0.000191635237333048!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00019766896460466!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000205145394444803!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000208668897299992!GO:0005798;Golgi-associated vesicle;0.000215161693795073!GO:0044440;endosomal part;0.000217630646693702!GO:0010008;endosome membrane;0.000217630646693702!GO:0000151;ubiquitin ligase complex;0.000217947900038831!GO:0042802;identical protein binding;0.000252526365402583!GO:0051052;regulation of DNA metabolic process;0.000260938800965634!GO:0051427;hormone receptor binding;0.000261369401319133!GO:0031072;heat shock protein binding;0.000280987607552197!GO:0007088;regulation of mitosis;0.000308123327423559!GO:0005885;Arp2/3 protein complex;0.000308123327423559!GO:0005741;mitochondrial outer membrane;0.000323460571684624!GO:0005048;signal sequence binding;0.000330593746786656!GO:0003684;damaged DNA binding;0.000340057072384968!GO:0004527;exonuclease activity;0.000350684122890497!GO:0008094;DNA-dependent ATPase activity;0.000353620897611309!GO:0016564;transcription repressor activity;0.000360068291506776!GO:0048522;positive regulation of cellular process;0.0003609058343133!GO:0008250;oligosaccharyl transferase complex;0.000369625660470463!GO:0005791;rough endoplasmic reticulum;0.000408275855861458!GO:0006839;mitochondrial transport;0.000408275855861458!GO:0051789;response to protein stimulus;0.000412928223828141!GO:0006986;response to unfolded protein;0.000412928223828141!GO:0005773;vacuole;0.000424495672900271!GO:0004576;oligosaccharyl transferase activity;0.000427420363904614!GO:0015980;energy derivation by oxidation of organic compounds;0.000428089476509047!GO:0016563;transcription activator activity;0.000443767357258963!GO:0006302;double-strand break repair;0.000452826035978448!GO:0003713;transcription coactivator activity;0.000458215043664564!GO:0030133;transport vesicle;0.00045883625701529!GO:0030880;RNA polymerase complex;0.000467127927573259!GO:0008168;methyltransferase activity;0.000480758487572691!GO:0019752;carboxylic acid metabolic process;0.000487551444718478!GO:0006082;organic acid metabolic process;0.000489282139650272!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000489282139650272!GO:0015399;primary active transmembrane transporter activity;0.000489282139650272!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000497053995991178!GO:0016741;transferase activity, transferring one-carbon groups;0.000511941054970771!GO:0019843;rRNA binding;0.000513450367631729!GO:0035257;nuclear hormone receptor binding;0.000526310198358112!GO:0016568;chromatin modification;0.000549920994692107!GO:0007006;mitochondrial membrane organization and biogenesis;0.000564207556861278!GO:0046474;glycerophospholipid biosynthetic process;0.000574714757449679!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000576165331247839!GO:0051168;nuclear export;0.000579563175335511!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000583313997877613!GO:0031982;vesicle;0.000588339704774268!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000614738911277989!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000616512204123931!GO:0031410;cytoplasmic vesicle;0.000618447844052975!GO:0046483;heterocycle metabolic process;0.000629682710256461!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000665903021142839!GO:0008186;RNA-dependent ATPase activity;0.000684203419824638!GO:0044262;cellular carbohydrate metabolic process;0.000787217965037822!GO:0000059;protein import into nucleus, docking;0.000829737011541254!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000855143300051499!GO:0005769;early endosome;0.000857974569924177!GO:0009892;negative regulation of metabolic process;0.0009812017050951!GO:0051920;peroxiredoxin activity;0.000990703968348908!GO:0005905;coated pit;0.00106804796447669!GO:0019899;enzyme binding;0.00107025768562286!GO:0006414;translational elongation;0.00107119891523506!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00109168054084877!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00109168054084877!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00109168054084877!GO:0007010;cytoskeleton organization and biogenesis;0.00113234081192693!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0011699106509437!GO:0000428;DNA-directed RNA polymerase complex;0.0011699106509437!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00118024185767728!GO:0015002;heme-copper terminal oxidase activity;0.00118024185767728!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00118024185767728!GO:0004129;cytochrome-c oxidase activity;0.00118024185767728!GO:0003729;mRNA binding;0.00118126589916502!GO:0006275;regulation of DNA replication;0.00119217522347199!GO:0018196;peptidyl-asparagine modification;0.00119217522347199!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00119217522347199!GO:0006383;transcription from RNA polymerase III promoter;0.00122523523853649!GO:0004518;nuclease activity;0.00129580758836932!GO:0003678;DNA helicase activity;0.00144320506971378!GO:0008610;lipid biosynthetic process;0.00153660168930598!GO:0000082;G1/S transition of mitotic cell cycle;0.00154212698117828!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00155103375319781!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00155103375319781!GO:0050662;coenzyme binding;0.00156098270877068!GO:0016126;sterol biosynthetic process;0.00157121794081237!GO:0030663;COPI coated vesicle membrane;0.00167022547583883!GO:0030126;COPI vesicle coat;0.00167022547583883!GO:0003690;double-stranded DNA binding;0.00170396955557465!GO:0005684;U2-dependent spliceosome;0.00170731279965645!GO:0004004;ATP-dependent RNA helicase activity;0.00173262318842238!GO:0032508;DNA duplex unwinding;0.00173262318842238!GO:0032392;DNA geometric change;0.00173262318842238!GO:0006118;electron transport;0.00174748010164038!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00180382410772351!GO:0046467;membrane lipid biosynthetic process;0.00183148854317909!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00185236149080222!GO:0051252;regulation of RNA metabolic process;0.00192403938615898!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00192403938615898!GO:0006778;porphyrin metabolic process;0.0020151728402007!GO:0033013;tetrapyrrole metabolic process;0.0020151728402007!GO:0000776;kinetochore;0.00212642086487391!GO:0000178;exosome (RNase complex);0.00219856231767128!GO:0043488;regulation of mRNA stability;0.00244975339525595!GO:0043487;regulation of RNA stability;0.00244975339525595!GO:0030036;actin cytoskeleton organization and biogenesis;0.00248293187764762!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00248293187764762!GO:0048500;signal recognition particle;0.00249623173375541!GO:0016363;nuclear matrix;0.00249795971910425!GO:0007093;mitotic cell cycle checkpoint;0.00250416536206211!GO:0000323;lytic vacuole;0.00250416536206211!GO:0005764;lysosome;0.00250416536206211!GO:0000049;tRNA binding;0.00250416536206211!GO:0007346;regulation of progression through mitotic cell cycle;0.00257671478754977!GO:0065009;regulation of a molecular function;0.00260609027896805!GO:0006268;DNA unwinding during replication;0.00272411006428858!GO:0008180;signalosome;0.00272863423396121!GO:0008312;7S RNA binding;0.00290555204046702!GO:0005758;mitochondrial intermembrane space;0.00291382899437359!GO:0009116;nucleoside metabolic process;0.00293189964553334!GO:0015631;tubulin binding;0.00293189964553334!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00313250086310218!GO:0006310;DNA recombination;0.00321714244734787!GO:0006595;polyamine metabolic process;0.0032793529623518!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00338376155980716!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00338376155980716!GO:0015992;proton transport;0.00341983781407602!GO:0006520;amino acid metabolic process;0.00356287340351003!GO:0048144;fibroblast proliferation;0.00374562484646958!GO:0048145;regulation of fibroblast proliferation;0.00374562484646958!GO:0043284;biopolymer biosynthetic process;0.00389223044325053!GO:0030176;integral to endoplasmic reticulum membrane;0.00413555173326585!GO:0006352;transcription initiation;0.00420201131792662!GO:0031970;organelle envelope lumen;0.00422321726131304!GO:0006818;hydrogen transport;0.0043193060887667!GO:0006402;mRNA catabolic process;0.00436393391025199!GO:0009451;RNA modification;0.00444740060069051!GO:0006740;NADPH regeneration;0.00447043850662475!GO:0006098;pentose-phosphate shunt;0.00447043850662475!GO:0046489;phosphoinositide biosynthetic process;0.00452132499154325!GO:0030137;COPI-coated vesicle;0.00464781936742855!GO:0007052;mitotic spindle organization and biogenesis;0.00469036385278298!GO:0009112;nucleobase metabolic process;0.00480799963320237!GO:0030134;ER to Golgi transport vesicle;0.00497209064193523!GO:0040008;regulation of growth;0.00503595582982255!GO:0051287;NAD binding;0.00509632088812155!GO:0022890;inorganic cation transmembrane transporter activity;0.00524788666468634!GO:0030127;COPII vesicle coat;0.00531516364094112!GO:0012507;ER to Golgi transport vesicle membrane;0.00531516364094112!GO:0016044;membrane organization and biogenesis;0.00541163075584197!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00554910188277507!GO:0045047;protein targeting to ER;0.00554910188277507!GO:0048146;positive regulation of fibroblast proliferation;0.00557264161260378!GO:0006979;response to oxidative stress;0.00572445553439385!GO:0008408;3'-5' exonuclease activity;0.00587102402934653!GO:0003746;translation elongation factor activity;0.00598799210385345!GO:0043492;ATPase activity, coupled to movement of substances;0.00599003868055301!GO:0006401;RNA catabolic process;0.00624445785037183!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00645118259639659!GO:0046870;cadmium ion binding;0.00645118259639659!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00650309136378233!GO:0016272;prefoldin complex;0.00654277980668027!GO:0043022;ribosome binding;0.00701155425227499!GO:0008139;nuclear localization sequence binding;0.00718269324987669!GO:0042168;heme metabolic process;0.00732707731536235!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00742470351068804!GO:0006695;cholesterol biosynthetic process;0.00751999656325975!GO:0048487;beta-tubulin binding;0.00756995643676112!GO:0004532;exoribonuclease activity;0.00756995643676112!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00756995643676112!GO:0006779;porphyrin biosynthetic process;0.00780512234497566!GO:0033014;tetrapyrrole biosynthetic process;0.00780512234497566!GO:0008632;apoptotic program;0.00781018490078397!GO:0050794;regulation of cellular process;0.00815802972500617!GO:0030132;clathrin coat of coated pit;0.00827620563958853!GO:0008320;protein transmembrane transporter activity;0.00831114207581435!GO:0007243;protein kinase cascade;0.0083853604307895!GO:0017166;vinculin binding;0.00884037835313978!GO:0048518;positive regulation of biological process;0.00893253804154508!GO:0004177;aminopeptidase activity;0.00893870903651917!GO:0007059;chromosome segregation;0.00909836815884924!GO:0006891;intra-Golgi vesicle-mediated transport;0.00931837214594341!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00946919005580675!GO:0008283;cell proliferation;0.00956338821926602!GO:0016481;negative regulation of transcription;0.00966616032857724!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00973271893240582!GO:0051539;4 iron, 4 sulfur cluster binding;0.0101443835413922!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0103215841426705!GO:0005832;chaperonin-containing T-complex;0.010924256910142!GO:0030658;transport vesicle membrane;0.0112128950181174!GO:0006417;regulation of translation;0.011288704729737!GO:0006144;purine base metabolic process;0.0116131409497886!GO:0006611;protein export from nucleus;0.0117639366283487!GO:0030029;actin filament-based process;0.0118283319859819!GO:0030027;lamellipodium;0.0118283319859819!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0118283319859819!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.011887228160195!GO:0035258;steroid hormone receptor binding;0.0120445420876782!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0123236057217154!GO:0009124;nucleoside monophosphate biosynthetic process;0.0124751150280482!GO:0009123;nucleoside monophosphate metabolic process;0.0124751150280482!GO:0004003;ATP-dependent DNA helicase activity;0.0130835378118693!GO:0030145;manganese ion binding;0.0131361260365184!GO:0007050;cell cycle arrest;0.0136167261437768!GO:0005862;muscle thin filament tropomyosin;0.0143676636397308!GO:0015036;disulfide oxidoreductase activity;0.0144977285125054!GO:0016251;general RNA polymerase II transcription factor activity;0.0145053418136059!GO:0051540;metal cluster binding;0.0146661864702711!GO:0051536;iron-sulfur cluster binding;0.0146661864702711!GO:0031124;mRNA 3'-end processing;0.0152470157750238!GO:0006405;RNA export from nucleus;0.0152670237102956!GO:0006790;sulfur metabolic process;0.0158977002921085!GO:0000096;sulfur amino acid metabolic process;0.0161514784551388!GO:0030521;androgen receptor signaling pathway;0.0162630259679927!GO:0003682;chromatin binding;0.0162630259679927!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0164363455639646!GO:0016860;intramolecular oxidoreductase activity;0.0164363455639646!GO:0006733;oxidoreduction coenzyme metabolic process;0.0164363455639646!GO:0048037;cofactor binding;0.0165708752000935!GO:0005874;microtubule;0.0168715855413711!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0172683323126258!GO:0000922;spindle pole;0.0173371420190642!GO:0043596;nuclear replication fork;0.0173371420190642!GO:0008538;proteasome activator activity;0.017626687406493!GO:0030833;regulation of actin filament polymerization;0.0177946826876512!GO:0005637;nuclear inner membrane;0.0179875958425546!GO:0005876;spindle microtubule;0.0180324267872561!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0182510066142862!GO:0045039;protein import into mitochondrial inner membrane;0.0182510066142862!GO:0048471;perinuclear region of cytoplasm;0.0188047257429925!GO:0005869;dynactin complex;0.0192644556895217!GO:0008637;apoptotic mitochondrial changes;0.019274600216022!GO:0000175;3'-5'-exoribonuclease activity;0.0193552537657096!GO:0006284;base-excision repair;0.0196540794381004!GO:0009967;positive regulation of signal transduction;0.0199670884050126!GO:0001726;ruffle;0.0199842166135465!GO:0006007;glucose catabolic process;0.0200820166599913!GO:0009303;rRNA transcription;0.0201169409934055!GO:0031529;ruffle organization and biogenesis;0.0203533550429377!GO:0006650;glycerophospholipid metabolic process;0.0203782674378316!GO:0007021;tubulin folding;0.0205115461804931!GO:0006506;GPI anchor biosynthetic process;0.0208149734057339!GO:0033673;negative regulation of kinase activity;0.0213242722551918!GO:0006469;negative regulation of protein kinase activity;0.0213242722551918!GO:0051348;negative regulation of transferase activity;0.0213811822277742!GO:0006739;NADP metabolic process;0.0217105377696312!GO:0003756;protein disulfide isomerase activity;0.0218697634792489!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0218697634792489!GO:0000910;cytokinesis;0.0218697634792489!GO:0031371;ubiquitin conjugating enzyme complex;0.0219266254500963!GO:0022415;viral reproductive process;0.0225008435268535!GO:0000339;RNA cap binding;0.0225279570824074!GO:0019206;nucleoside kinase activity;0.0226552880701451!GO:0030041;actin filament polymerization;0.0231985063583343!GO:0016584;nucleosome positioning;0.0237118480993922!GO:0045792;negative regulation of cell size;0.0237591138853653!GO:0042770;DNA damage response, signal transduction;0.0238212979020413!GO:0030660;Golgi-associated vesicle membrane;0.0238628663816461!GO:0009161;ribonucleoside monophosphate metabolic process;0.0242452810964195!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0242452810964195!GO:0030308;negative regulation of cell growth;0.0245121124220181!GO:0022408;negative regulation of cell-cell adhesion;0.024683772921219!GO:0031418;L-ascorbic acid binding;0.0247857086655149!GO:0030032;lamellipodium biogenesis;0.0251398204357152!GO:0006518;peptide metabolic process;0.0251500614714776!GO:0008022;protein C-terminus binding;0.0251500614714776!GO:0031326;regulation of cellular biosynthetic process;0.0251908752184405!GO:0006807;nitrogen compound metabolic process;0.0253076455038806!GO:0008047;enzyme activator activity;0.0255378252906867!GO:0006220;pyrimidine nucleotide metabolic process;0.0264216924816599!GO:0006289;nucleotide-excision repair;0.0264268642955439!GO:0005669;transcription factor TFIID complex;0.0264420679413024!GO:0006783;heme biosynthetic process;0.0267057115585291!GO:0008092;cytoskeletal protein binding;0.0267144182698542!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0269622494954863!GO:0009119;ribonucleoside metabolic process;0.0270912285584176!GO:0009889;regulation of biosynthetic process;0.0271492112289055!GO:0022884;macromolecule transmembrane transporter activity;0.0271760243170409!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0271760243170409!GO:0046128;purine ribonucleoside metabolic process;0.0272537257291743!GO:0042278;purine nucleoside metabolic process;0.0272537257291743!GO:0006505;GPI anchor metabolic process;0.0280495362369168!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0283643519370145!GO:0010257;NADH dehydrogenase complex assembly;0.0283643519370145!GO:0033108;mitochondrial respiratory chain complex assembly;0.0283643519370145!GO:0050790;regulation of catalytic activity;0.0283795567431229!GO:0030508;thiol-disulfide exchange intermediate activity;0.028723713714014!GO:0051270;regulation of cell motility;0.0287863745144509!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0288979363743702!GO:0005732;small nucleolar ribonucleoprotein complex;0.0292737448199146!GO:0031902;late endosome membrane;0.029276460058047!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0298390435732967!GO:0051101;regulation of DNA binding;0.0300379294230463!GO:0031272;regulation of pseudopodium formation;0.0300379294230463!GO:0031269;pseudopodium formation;0.0300379294230463!GO:0031344;regulation of cell projection organization and biogenesis;0.0300379294230463!GO:0031268;pseudopodium organization and biogenesis;0.0300379294230463!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0300379294230463!GO:0031274;positive regulation of pseudopodium formation;0.0300379294230463!GO:0030659;cytoplasmic vesicle membrane;0.0300463144147054!GO:0031570;DNA integrity checkpoint;0.0300463144147054!GO:0000725;recombinational repair;0.0301919812059881!GO:0000724;double-strand break repair via homologous recombination;0.0301919812059881!GO:0003711;transcription elongation regulator activity;0.0307584077988846!GO:0006497;protein amino acid lipidation;0.031561959989451!GO:0000287;magnesium ion binding;0.0315631680296609!GO:0043189;H4/H2A histone acetyltransferase complex;0.0317189548256541!GO:0031901;early endosome membrane;0.0317617670862441!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0319712939617202!GO:0004540;ribonuclease activity;0.0320346151103918!GO:0006509;membrane protein ectodomain proteolysis;0.0328502509287511!GO:0033619;membrane protein proteolysis;0.0328502509287511!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0331365763743675!GO:0006378;mRNA polyadenylation;0.0337375764137135!GO:0000209;protein polyubiquitination;0.0340012505685273!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0340012505685273!GO:0035267;NuA4 histone acetyltransferase complex;0.0341318728031503!GO:0009308;amine metabolic process;0.0342787508497187!GO:0030118;clathrin coat;0.0345771849819439!GO:0042158;lipoprotein biosynthetic process;0.0350845999990938!GO:0033559;unsaturated fatty acid metabolic process;0.0355124555515296!GO:0006636;unsaturated fatty acid biosynthetic process;0.0355124555515296!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0357126684078628!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0358493515539332!GO:0031589;cell-substrate adhesion;0.0360194924159208!GO:0030911;TPR domain binding;0.0362622233855115!GO:0005583;fibrillar collagen;0.0369586407360376!GO:0032984;macromolecular complex disassembly;0.0369603794248533!GO:0043086;negative regulation of catalytic activity;0.0370862462379886!GO:0007040;lysosome organization and biogenesis;0.0371653620476186!GO:0006730;one-carbon compound metabolic process;0.0372062030265585!GO:0048468;cell development;0.0378967917800428!GO:0005801;cis-Golgi network;0.0381799392774072!GO:0046519;sphingoid metabolic process;0.0385359910268896!GO:0031625;ubiquitin protein ligase binding;0.0389508294272638!GO:0032259;methylation;0.0389608094327218!GO:0006596;polyamine biosynthetic process;0.0390092310251109!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0392232975548616!GO:0042393;histone binding;0.0394067857617422!GO:0001952;regulation of cell-matrix adhesion;0.0411770352042999!GO:0005092;GDP-dissociation inhibitor activity;0.0414121663489789!GO:0004674;protein serine/threonine kinase activity;0.0415499366585625!GO:0050178;phenylpyruvate tautomerase activity;0.0416224527935709!GO:0009003;signal peptidase activity;0.0416224527935709!GO:0016407;acetyltransferase activity;0.041836147085125!GO:0043414;biopolymer methylation;0.0426407675919642!GO:0048660;regulation of smooth muscle cell proliferation;0.0429505039373959!GO:0006360;transcription from RNA polymerase I promoter;0.04306007310042!GO:0051128;regulation of cellular component organization and biogenesis;0.0430793199675441!GO:0016197;endosome transport;0.0430793199675441!GO:0006769;nicotinamide metabolic process;0.0435090112275027!GO:0000781;chromosome, telomeric region;0.0442020803766686!GO:0043601;nuclear replisome;0.0445429919346811!GO:0030894;replisome;0.0445429919346811!GO:0051098;regulation of binding;0.0450917167975526!GO:0007569;cell aging;0.0460111914814756!GO:0005588;collagen type V;0.0460538048087324!GO:0007017;microtubule-based process;0.0460538048087324!GO:0016408;C-acyltransferase activity;0.0468209977878062!GO:0030503;regulation of cell redox homeostasis;0.047069088230695!GO:0030518;steroid hormone receptor signaling pathway;0.0470795775888703!GO:0006400;tRNA modification;0.0471606253354149!GO:0008629;induction of apoptosis by intracellular signals;0.0472644938602057!GO:0050811;GABA receptor binding;0.0475567063991311!GO:0035035;histone acetyltransferase binding;0.0478906099138569!GO:0007034;vacuolar transport;0.0479372741613866!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0483112249968123!GO:0008652;amino acid biosynthetic process;0.0484712468730916!GO:0008537;proteasome activator complex;0.0485621260094736!GO:0000084;S phase of mitotic cell cycle;0.048564857404085!GO:0004526;ribonuclease P activity;0.0486451878669212!GO:0006270;DNA replication initiation;0.0486451878669212!GO:0004549;tRNA-specific ribonuclease activity;0.0491969091757705!GO:0006892;post-Golgi vesicle-mediated transport;0.0491969091757705!GO:0046426;negative regulation of JAK-STAT cascade;0.0491969091757705!GO:0004197;cysteine-type endopeptidase activity;0.0498848116600232!GO:0008147;structural constituent of bone;0.0499294328936226 | |||
|sample_id=11698 | |sample_id=11698 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=adipose tissue | |sample_tissue=adipose tissue | ||
|top_motifs=ALX4:1.76304837054;HES1:1.41889485501;POU3F1..4:1.30873225478;UFEwm:1.22245084978;GLI1..3:1.19705964269;NFE2L1:1.17819485346;NR6A1:1.06819759088;SPZ1:1.01784691092;EN1,2:1.0082835706;HOX{A4,D4}:1.0056630391;PAX1,9:0.993320476498;NR3C1:0.966898992511;GFI1B:0.955294629486;AIRE:0.946901958361;NKX3-1:0.865765266382;ZNF238:0.856006943772;PAX8:0.855687105305;MYBL2:0.84340068716;HSF1,2:0.779071211969;ZNF384:0.725077416787;IKZF1:0.687237331602;TEF:0.68603949415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.684755252075;HOX{A5,B5}:0.658775848844;AR:0.654836119781;LHX3,4:0.648546173807;ZNF423:0.641235262403;FOXL1:0.600630035325;NKX2-1,4:0.554989326729;NANOG{mouse}:0.548169606101;TOPORS:0.539285060265;YY1:0.534652438638;HOX{A6,A7,B6,B7}:0.528910447315;E2F1..5:0.521333305971;HOXA9_MEIS1:0.490534035038;NR5A1,2:0.487512686979;TBP:0.457657429354;FOXD3:0.44918672733;POU2F1..3:0.444254285827;TAL1_TCF{3,4,12}:0.434757919582;GATA4:0.411579059989;PBX1:0.399681581442;ESRRA:0.366637671357;SRF:0.351455608764;TFDP1:0.342863508156;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.329085362009;NKX2-2,8:0.327257266043;PPARG:0.322330682123;CDX1,2,4:0.30043831283;TFCP2:0.300144270987;MYB:0.298395208665;SOX17:0.296674597742;ESR1:0.295568870485;NKX3-2:0.294715465927;HBP1_HMGB_SSRP1_UBTF:0.251841880957;POU6F1:0.240937663897;HAND1,2:0.240158469099;ZBTB16:0.218575492166;EVI1:0.216385848026;RXR{A,B,G}:0.203733270312;KLF4:0.200602944808;TFAP4:0.182742977053;TLX1..3_NFIC{dimer}:0.182555844712;BACH2:0.165256813093;GFI1:0.158382414053;STAT5{A,B}:0.156777722894;TEAD1:0.150830128297;ALX1:0.148470655123;NFATC1..3:0.117121221081;GTF2A1,2:0.116641301352;EBF1:0.102817033048;ZIC1..3:0.075661430897;FOS_FOS{B,L1}_JUN{B,D}:0.0739613825564;LEF1_TCF7_TCF7L1,2:0.0521586602382;TP53:0.044035992723;STAT2,4,6:0.0420110740681;HNF1A:0.0405161711711;AHR_ARNT_ARNT2:0.012509175769;GZF1:0.00887459935394;SOX5:0.00780637738396;NKX2-3_NKX2-5:0.000997663993296;NFE2L2:-0.0183513974536;HMX1:-0.0193758978274;POU1F1:-0.0303187319821;ONECUT1,2:-0.0306385193387;MTF1:-0.0393668039081;PRDM1:-0.0606497830435;MAFB:-0.0680064739451;NFIX:-0.0839474173903;ATF6:-0.0939398644668;SMAD1..7,9:-0.10021349384;bHLH_family:-0.123682331551;HLF:-0.133459796681;RXRA_VDR{dimer}:-0.14375653976;RBPJ:-0.145033896014;ZNF143:-0.146033723805;XBP1:-0.16723096819;NFE2:-0.168195427099;XCPE1{core}:-0.174536400003;T:-0.179489805318;PAX4:-0.187768578819;GTF2I:-0.190440944112;NFY{A,B,C}:-0.19334901372;GCM1,2:-0.219607078778;NFKB1_REL_RELA:-0.228543462465;RUNX1..3:-0.235096397765;HIF1A:-0.254647859949;FOSL2:-0.263099975053;RFX1:-0.297058486168;VSX1,2:-0.310555395877;HNF4A_NR2F1,2:-0.316257837154;REST:-0.326751867392;ELF1,2,4:-0.337041773737;SOX{8,9,10}:-0.346684208917;MEF2{A,B,C,D}:-0.347800239268;FOXP3:-0.355456187418;PITX1..3:-0.381838052658;PRRX1,2:-0.389732119079;ETS1,2:-0.398829031986;OCT4_SOX2{dimer}:-0.403253447613;MZF1:-0.409567202968;SPIB:-0.411222018156;PAX5:-0.412481324845;CDC5L:-0.420567814823;DBP:-0.455998365853;SPI1:-0.45958709923;ZBTB6:-0.459759873964;IKZF2:-0.464215616542;PAX6:-0.465508216837;POU5F1:-0.489183162795;ARID5B:-0.499067173912;IRF1,2:-0.511103447606;ELK1,4_GABP{A,B1}:-0.5478473499;TFAP2{A,C}:-0.549278722559;TBX4,5:-0.553486822851;TLX2:-0.56201664023;HIC1:-0.562214005724;CREB1:-0.565895740929;GATA6:-0.571019138958;PAX2:-0.574137149428;DMAP1_NCOR{1,2}_SMARC:-0.599174481027;IRF7:-0.629436555961;NR1H4:-0.636099700952;ATF2:-0.643451194782;FOXQ1:-0.646035335277;MYFfamily:-0.658847347271;PDX1:-0.679925938348;CUX2:-0.688074678983;TFAP2B:-0.70571390629;RFX2..5_RFXANK_RFXAP:-0.730103399698;NRF1:-0.737261145011;PAX3,7:-0.747107313003;CEBPA,B_DDIT3:-0.764651629789;ZFP161:-0.783281640414;SNAI1..3:-0.786540593117;HMGA1,2:-0.789203718424;ATF5_CREB3:-0.795489023064;RORA:-0.809106795873;BPTF:-0.829380840542;NHLH1,2:-0.854091706187;JUN:-0.856545979513;PATZ1:-0.863261821278;RREB1:-0.863773643307;BREu{core}:-0.867613960654;NFIL3:-0.885811746537;MTE{core}:-0.910073134158;SOX2:-0.911784662737;MED-1{core}:-0.912927143652;ZNF148:-0.936612361056;FOXM1:-0.94404922398;ZEB1:-0.945028193288;TGIF1:-0.973437640167;FOXA2:-0.974840418949;LMO2:-1.0052907817;EGR1..3:-1.04446706308;NKX6-1,2:-1.06439705604;FOX{D1,D2}:-1.0745394864;CRX:-1.08624161742;FOXP1:-1.09604889966;MAZ:-1.10360723609;FOX{F1,F2,J1}:-1.13481618491;NANOG:-1.15451304301;ATF4:-1.18182604272;FOX{I1,J2}:-1.22128534174;SP1:-1.26423515951;ADNP_IRX_SIX_ZHX:-1.27183017944;MYOD1:-1.33239804836;SREBF1,2:-1.36722637871;STAT1,3:-1.50090781052;FOXN1:-1.54464811792;FOXO1,3,4:-1.70590015274;EP300:-1.73474337432 | |top_motifs=ALX4:1.76304837054;HES1:1.41889485501;POU3F1..4:1.30873225478;UFEwm:1.22245084978;GLI1..3:1.19705964269;NFE2L1:1.17819485346;NR6A1:1.06819759088;SPZ1:1.01784691092;EN1,2:1.0082835706;HOX{A4,D4}:1.0056630391;PAX1,9:0.993320476498;NR3C1:0.966898992511;GFI1B:0.955294629486;AIRE:0.946901958361;NKX3-1:0.865765266382;ZNF238:0.856006943772;PAX8:0.855687105305;MYBL2:0.84340068716;HSF1,2:0.779071211969;ZNF384:0.725077416787;IKZF1:0.687237331602;TEF:0.68603949415;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.684755252075;HOX{A5,B5}:0.658775848844;AR:0.654836119781;LHX3,4:0.648546173807;ZNF423:0.641235262403;FOXL1:0.600630035325;NKX2-1,4:0.554989326729;NANOG{mouse}:0.548169606101;TOPORS:0.539285060265;YY1:0.534652438638;HOX{A6,A7,B6,B7}:0.528910447315;E2F1..5:0.521333305971;HOXA9_MEIS1:0.490534035038;NR5A1,2:0.487512686979;TBP:0.457657429354;FOXD3:0.44918672733;POU2F1..3:0.444254285827;TAL1_TCF{3,4,12}:0.434757919582;GATA4:0.411579059989;PBX1:0.399681581442;ESRRA:0.366637671357;SRF:0.351455608764;TFDP1:0.342863508156;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.329085362009;NKX2-2,8:0.327257266043;PPARG:0.322330682123;CDX1,2,4:0.30043831283;TFCP2:0.300144270987;MYB:0.298395208665;SOX17:0.296674597742;ESR1:0.295568870485;NKX3-2:0.294715465927;HBP1_HMGB_SSRP1_UBTF:0.251841880957;POU6F1:0.240937663897;HAND1,2:0.240158469099;ZBTB16:0.218575492166;EVI1:0.216385848026;RXR{A,B,G}:0.203733270312;KLF4:0.200602944808;TFAP4:0.182742977053;TLX1..3_NFIC{dimer}:0.182555844712;BACH2:0.165256813093;GFI1:0.158382414053;STAT5{A,B}:0.156777722894;TEAD1:0.150830128297;ALX1:0.148470655123;NFATC1..3:0.117121221081;GTF2A1,2:0.116641301352;EBF1:0.102817033048;ZIC1..3:0.075661430897;FOS_FOS{B,L1}_JUN{B,D}:0.0739613825564;LEF1_TCF7_TCF7L1,2:0.0521586602382;TP53:0.044035992723;STAT2,4,6:0.0420110740681;HNF1A:0.0405161711711;AHR_ARNT_ARNT2:0.012509175769;GZF1:0.00887459935394;SOX5:0.00780637738396;NKX2-3_NKX2-5:0.000997663993296;NFE2L2:-0.0183513974536;HMX1:-0.0193758978274;POU1F1:-0.0303187319821;ONECUT1,2:-0.0306385193387;MTF1:-0.0393668039081;PRDM1:-0.0606497830435;MAFB:-0.0680064739451;NFIX:-0.0839474173903;ATF6:-0.0939398644668;SMAD1..7,9:-0.10021349384;bHLH_family:-0.123682331551;HLF:-0.133459796681;RXRA_VDR{dimer}:-0.14375653976;RBPJ:-0.145033896014;ZNF143:-0.146033723805;XBP1:-0.16723096819;NFE2:-0.168195427099;XCPE1{core}:-0.174536400003;T:-0.179489805318;PAX4:-0.187768578819;GTF2I:-0.190440944112;NFY{A,B,C}:-0.19334901372;GCM1,2:-0.219607078778;NFKB1_REL_RELA:-0.228543462465;RUNX1..3:-0.235096397765;HIF1A:-0.254647859949;FOSL2:-0.263099975053;RFX1:-0.297058486168;VSX1,2:-0.310555395877;HNF4A_NR2F1,2:-0.316257837154;REST:-0.326751867392;ELF1,2,4:-0.337041773737;SOX{8,9,10}:-0.346684208917;MEF2{A,B,C,D}:-0.347800239268;FOXP3:-0.355456187418;PITX1..3:-0.381838052658;PRRX1,2:-0.389732119079;ETS1,2:-0.398829031986;OCT4_SOX2{dimer}:-0.403253447613;MZF1:-0.409567202968;SPIB:-0.411222018156;PAX5:-0.412481324845;CDC5L:-0.420567814823;DBP:-0.455998365853;SPI1:-0.45958709923;ZBTB6:-0.459759873964;IKZF2:-0.464215616542;PAX6:-0.465508216837;POU5F1:-0.489183162795;ARID5B:-0.499067173912;IRF1,2:-0.511103447606;ELK1,4_GABP{A,B1}:-0.5478473499;TFAP2{A,C}:-0.549278722559;TBX4,5:-0.553486822851;TLX2:-0.56201664023;HIC1:-0.562214005724;CREB1:-0.565895740929;GATA6:-0.571019138958;PAX2:-0.574137149428;DMAP1_NCOR{1,2}_SMARC:-0.599174481027;IRF7:-0.629436555961;NR1H4:-0.636099700952;ATF2:-0.643451194782;FOXQ1:-0.646035335277;MYFfamily:-0.658847347271;PDX1:-0.679925938348;CUX2:-0.688074678983;TFAP2B:-0.70571390629;RFX2..5_RFXANK_RFXAP:-0.730103399698;NRF1:-0.737261145011;PAX3,7:-0.747107313003;CEBPA,B_DDIT3:-0.764651629789;ZFP161:-0.783281640414;SNAI1..3:-0.786540593117;HMGA1,2:-0.789203718424;ATF5_CREB3:-0.795489023064;RORA:-0.809106795873;BPTF:-0.829380840542;NHLH1,2:-0.854091706187;JUN:-0.856545979513;PATZ1:-0.863261821278;RREB1:-0.863773643307;BREu{core}:-0.867613960654;NFIL3:-0.885811746537;MTE{core}:-0.910073134158;SOX2:-0.911784662737;MED-1{core}:-0.912927143652;ZNF148:-0.936612361056;FOXM1:-0.94404922398;ZEB1:-0.945028193288;TGIF1:-0.973437640167;FOXA2:-0.974840418949;LMO2:-1.0052907817;EGR1..3:-1.04446706308;NKX6-1,2:-1.06439705604;FOX{D1,D2}:-1.0745394864;CRX:-1.08624161742;FOXP1:-1.09604889966;MAZ:-1.10360723609;FOX{F1,F2,J1}:-1.13481618491;NANOG:-1.15451304301;ATF4:-1.18182604272;FOX{I1,J2}:-1.22128534174;SP1:-1.26423515951;ADNP_IRX_SIX_ZHX:-1.27183017944;MYOD1:-1.33239804836;SREBF1,2:-1.36722637871;STAT1,3:-1.50090781052;FOXN1:-1.54464811792;FOXO1,3,4:-1.70590015274;EP300:-1.73474337432 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11698-123A6;search_select_hide=table117:FF:11698-123A6 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Mesenchymal Stem Cells - adipose, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12922 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12922
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12922
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0214 |
| 10 | 10 | 0.0663 |
| 100 | 100 | 0.153 |
| 101 | 101 | 0.891 |
| 102 | 102 | 0.908 |
| 103 | 103 | 0.107 |
| 104 | 104 | 0.456 |
| 105 | 105 | 0.0975 |
| 106 | 106 | 0.0723 |
| 107 | 107 | 0.029 |
| 108 | 108 | 0.313 |
| 109 | 109 | 0.0482 |
| 11 | 11 | 0.0528 |
| 110 | 110 | 0.0527 |
| 111 | 111 | 0.0635 |
| 112 | 112 | 0.132 |
| 113 | 113 | 0.136 |
| 114 | 114 | 0.0986 |
| 115 | 115 | 0.0872 |
| 116 | 116 | 0.0489 |
| 117 | 117 | 0.139 |
| 118 | 118 | 0.46 |
| 119 | 119 | 0.238 |
| 12 | 12 | 0.406 |
| 120 | 120 | 0.0757 |
| 121 | 121 | 0.999 |
| 122 | 122 | 0.192 |
| 123 | 123 | 0.872 |
| 124 | 124 | 0.696 |
| 125 | 125 | 0.0473 |
| 126 | 126 | 0.641 |
| 127 | 127 | 0.104 |
| 128 | 128 | 0.14 |
| 129 | 129 | 0.905 |
| 13 | 13 | 0.0939 |
| 130 | 130 | 0.329 |
| 131 | 131 | 0.833 |
| 132 | 132 | 0.607 |
| 133 | 133 | 0.471 |
| 134 | 134 | 0.551 |
| 135 | 135 | 0.961 |
| 136 | 136 | 0.744 |
| 137 | 137 | 0.264 |
| 138 | 138 | 0.886 |
| 139 | 139 | 0.473 |
| 14 | 14 | 0.391 |
| 140 | 140 | 0.145 |
| 141 | 141 | 0.259 |
| 142 | 142 | 0.794 |
| 143 | 143 | 0.0782 |
| 144 | 144 | 0.688 |
| 145 | 145 | 0.0765 |
| 146 | 146 | 0.708 |
| 147 | 147 | 0.0664 |
| 148 | 148 | 0.041 |
| 149 | 149 | 0.399 |
| 15 | 15 | 0.186 |
| 150 | 150 | 0.174 |
| 151 | 151 | 0.505 |
| 152 | 152 | 0.21 |
| 153 | 153 | 0.955 |
| 154 | 154 | 0.918 |
| 155 | 155 | 0.669 |
| 156 | 156 | 0.561 |
| 157 | 157 | 0.21 |
| 158 | 158 | 0.345 |
| 159 | 159 | 0.272 |
| 16 | 16 | 0.028 |
| 160 | 160 | 0.0253 |
| 161 | 161 | 0.883 |
| 162 | 162 | 0.281 |
| 163 | 163 | 0.751 |
| 164 | 164 | 0.249 |
| 165 | 165 | 0.601 |
| 166 | 166 | 0.166 |
| 167 | 167 | 0.174 |
| 168 | 168 | 0.297 |
| 169 | 169 | 0.00401 |
| 17 | 17 | 0.186 |
| 18 | 18 | 0.068 |
| 19 | 19 | 0.0433 |
| 2 | 2 | 0.649 |
| 20 | 20 | 0.675 |
| 21 | 21 | 0.061 |
| 22 | 22 | 0.281 |
| 23 | 23 | 0.417 |
| 24 | 24 | 0.41 |
| 25 | 25 | 0.989 |
| 26 | 26 | 0.0186 |
| 27 | 27 | 0.428 |
| 28 | 28 | 0.293 |
| 29 | 29 | 0.0881 |
| 3 | 3 | 0.0761 |
| 30 | 30 | 0.856 |
| 31 | 31 | 0.725 |
| 32 | 32 | 1.95583e-7 |
| 33 | 33 | 0.211 |
| 34 | 34 | 0.629 |
| 35 | 35 | 0.271 |
| 36 | 36 | 0.0619 |
| 37 | 37 | 0.047 |
| 38 | 38 | 0.338 |
| 39 | 39 | 0.266 |
| 4 | 4 | 0.861 |
| 40 | 40 | 0.197 |
| 41 | 41 | 0.589 |
| 42 | 42 | 0.365 |
| 43 | 43 | 0.124 |
| 44 | 44 | 0.0167 |
| 45 | 45 | 0.93 |
| 46 | 46 | 0.0328 |
| 47 | 47 | 0.094 |
| 48 | 48 | 0.105 |
| 49 | 49 | 0.205 |
| 5 | 5 | 0.481 |
| 50 | 50 | 0.683 |
| 51 | 51 | 0.472 |
| 52 | 52 | 0.903 |
| 53 | 53 | 0.555 |
| 54 | 54 | 0.768 |
| 55 | 55 | 0.761 |
| 56 | 56 | 0.59 |
| 57 | 57 | 0.11 |
| 58 | 58 | 0.683 |
| 59 | 59 | 0.0714 |
| 6 | 6 | 0.499 |
| 60 | 60 | 0.47 |
| 61 | 61 | 0.676 |
| 62 | 62 | 0.274 |
| 63 | 63 | 0.12 |
| 64 | 64 | 0.293 |
| 65 | 65 | 0.146 |
| 66 | 66 | 0.89 |
| 67 | 67 | 0.318 |
| 68 | 68 | 0.586 |
| 69 | 69 | 0.164 |
| 7 | 7 | 0.641 |
| 70 | 70 | 0.124 |
| 71 | 71 | 0.0226 |
| 72 | 72 | 0.827 |
| 73 | 73 | 0.076 |
| 74 | 74 | 0.101 |
| 75 | 75 | 0.127 |
| 76 | 76 | 0.726 |
| 77 | 77 | 0.0621 |
| 78 | 78 | 0.536 |
| 79 | 79 | 0.0202 |
| 8 | 8 | 0.00295 |
| 80 | 80 | 0.303 |
| 81 | 81 | 0.253 |
| 82 | 82 | 0.466 |
| 83 | 83 | 0.569 |
| 84 | 84 | 0.389 |
| 85 | 85 | 0.132 |
| 86 | 86 | 0.768 |
| 87 | 87 | 0.148 |
| 88 | 88 | 0.584 |
| 89 | 89 | 0.154 |
| 9 | 9 | 0.381 |
| 90 | 90 | 0.286 |
| 91 | 91 | 0.562 |
| 92 | 92 | 0.15 |
| 93 | 93 | 0.71 |
| 94 | 94 | 0.0521 |
| 95 | 95 | 0.107 |
| 96 | 96 | 0.19 |
| 97 | 97 | 0.462 |
| 98 | 98 | 0.149 |
| 99 | 99 | 0.0164 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12922
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000096 human mesenchymal stem cell of adipose sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)
UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000096 (human mesenchymal stem cell of adipose sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
