FF:10153-102I9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005074 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10025;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/hippocampus%252c%2520adult%252c%2520donor10252.NCig10025.10153-102I9.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008668;DRR009540;DRZ000965;DRZ002350;DRZ012315;DRZ013700 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010153 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%252c%2520adult%252c%2520donor10252.CNhs12312.10153-102I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10153-102I9 | |id=FF:10153-102I9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0010153 | ||
|is_obsolete= | |||
|library_id=CNhs12312 | |||
|library_id_phase_based=2:CNhs12312 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10153 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10153 | |||
|name=hippocampus, adult, donor10252 | |name=hippocampus, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=NCig10025,,, | |profile_cagescan=NCig10025,,, | ||
|profile_hcage=CNhs12312,LSID913,release011,COMPLETED | |profile_hcage=CNhs12312,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=62.1315 | |rna_weight_ug=62.1315 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.62475724189019e-280!GO:0005737;cytoplasm;4.41331463175832e-145!GO:0043226;organelle;2.64663253737799e-98!GO:0043229;intracellular organelle;7.12469575222791e-98!GO:0043227;membrane-bound organelle;1.48063692665291e-91!GO:0043231;intracellular membrane-bound organelle;2.14940933365904e-91!GO:0044444;cytoplasmic part;7.7943353712635e-87!GO:0005515;protein binding;7.89946300415534e-76!GO:0044422;organelle part;7.635150753606e-58!GO:0044446;intracellular organelle part;6.9486788934183e-57!GO:0032991;macromolecular complex;7.43369382588216e-53!GO:0016043;cellular component organization and biogenesis;1.61384143821077e-46!GO:0003723;RNA binding;1.8782649855498e-36!GO:0030529;ribonucleoprotein complex;7.60470738238709e-36!GO:0033036;macromolecule localization;1.58897259814175e-35!GO:0015031;protein transport;2.26560785515297e-34!GO:0005739;mitochondrion;3.81135507851299e-33!GO:0008104;protein localization;5.04782559463396e-32!GO:0045184;establishment of protein localization;3.5987659808121e-31!GO:0044428;nuclear part;9.79968580737796e-31!GO:0043233;organelle lumen;1.01576175518412e-30!GO:0031974;membrane-enclosed lumen;1.01576175518412e-30!GO:0031090;organelle membrane;1.13816454782364e-30!GO:0043234;protein complex;4.42748896159672e-29!GO:0046907;intracellular transport;2.25912245275881e-28!GO:0005634;nucleus;1.27614675537491e-26!GO:0044238;primary metabolic process;2.25664806232916e-26!GO:0016192;vesicle-mediated transport;2.29988581424909e-26!GO:0016071;mRNA metabolic process;5.80856030195699e-26!GO:0051649;establishment of cellular localization;1.04444590388266e-25!GO:0051641;cellular localization;2.2528879007674e-25!GO:0043170;macromolecule metabolic process;6.60716277059e-25!GO:0044237;cellular metabolic process;1.28062099166398e-24!GO:0044429;mitochondrial part;1.65311645516851e-24!GO:0008380;RNA splicing;5.6302815913018e-23!GO:0031975;envelope;8.44709512487852e-23!GO:0031967;organelle envelope;1.19989804546126e-22!GO:0019538;protein metabolic process;1.52295582083519e-22!GO:0005829;cytosol;1.56899485324452e-22!GO:0006396;RNA processing;4.28871142498644e-22!GO:0006397;mRNA processing;6.17008345970982e-21!GO:0006886;intracellular protein transport;1.44997656773654e-20!GO:0031981;nuclear lumen;2.64575141131492e-19!GO:0044260;cellular macromolecule metabolic process;3.28521416522747e-19!GO:0006996;organelle organization and biogenesis;4.56532908509978e-19!GO:0044267;cellular protein metabolic process;1.43245332737054e-18!GO:0006119;oxidative phosphorylation;2.87899140501248e-18!GO:0005794;Golgi apparatus;4.4215796543022e-18!GO:0005840;ribosome;5.69685510189189e-18!GO:0005740;mitochondrial envelope;7.87747001910687e-18!GO:0031966;mitochondrial membrane;1.52390413924703e-17!GO:0000166;nucleotide binding;5.05510221782204e-17!GO:0031982;vesicle;1.00075373964157e-16!GO:0043283;biopolymer metabolic process;2.01854516417009e-16!GO:0065003;macromolecular complex assembly;2.30685790497065e-16!GO:0019866;organelle inner membrane;3.11617275620334e-16!GO:0031410;cytoplasmic vesicle;5.31918860976402e-16!GO:0031988;membrane-bound vesicle;1.42445121524629e-15!GO:0005681;spliceosome;1.48723229364406e-15!GO:0005743;mitochondrial inner membrane;1.61480557455478e-15!GO:0016023;cytoplasmic membrane-bound vesicle;6.7817553442527e-15!GO:0022607;cellular component assembly;1.71783034759408e-14!GO:0006412;translation;2.02446341645093e-14!GO:0003735;structural constituent of ribosome;1.13571574624342e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.12638016369731e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;3.56673160141916e-13!GO:0044455;mitochondrial membrane part;3.56673160141916e-13!GO:0016462;pyrophosphatase activity;3.73546936368818e-13!GO:0005654;nucleoplasm;4.76419405386463e-13!GO:0048770;pigment granule;6.68727311828754e-13!GO:0042470;melanosome;6.68727311828754e-13!GO:0043412;biopolymer modification;7.84357396580972e-13!GO:0043687;post-translational protein modification;8.27200354861812e-13!GO:0005746;mitochondrial respiratory chain;9.86240364266806e-13!GO:0010467;gene expression;1.05246102653657e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.19573031812455e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.20388309051553e-12!GO:0003954;NADH dehydrogenase activity;1.20388309051553e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.20388309051553e-12!GO:0006512;ubiquitin cycle;1.487660994284e-12!GO:0017111;nucleoside-triphosphatase activity;1.57825017194991e-12!GO:0032553;ribonucleotide binding;1.58622151986668e-12!GO:0032555;purine ribonucleotide binding;1.58622151986668e-12!GO:0006464;protein modification process;2.67615214102325e-12!GO:0030695;GTPase regulator activity;3.22246221237615e-12!GO:0044451;nucleoplasm part;3.34179140530131e-12!GO:0007264;small GTPase mediated signal transduction;3.77935319140379e-12!GO:0008134;transcription factor binding;4.03624530387403e-12!GO:0033279;ribosomal subunit;5.39056681028893e-12!GO:0017076;purine nucleotide binding;1.52732644409186e-11!GO:0045045;secretory pathway;1.75863652033613e-11!GO:0009058;biosynthetic process;2.99189961446705e-11!GO:0006793;phosphorus metabolic process;3.39352073561603e-11!GO:0006796;phosphate metabolic process;3.39352073561603e-11!GO:0012505;endomembrane system;4.88792261210661e-11!GO:0006457;protein folding;5.27908614963711e-11!GO:0008092;cytoskeletal protein binding;7.18831527825971e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.00437002530449e-10!GO:0045271;respiratory chain complex I;1.00437002530449e-10!GO:0005747;mitochondrial respiratory chain complex I;1.00437002530449e-10!GO:0043228;non-membrane-bound organelle;1.10480328087094e-10!GO:0043232;intracellular non-membrane-bound organelle;1.10480328087094e-10!GO:0016874;ligase activity;1.5239232603089e-10!GO:0005083;small GTPase regulator activity;1.87370444911269e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.11989006210797e-10!GO:0042773;ATP synthesis coupled electron transport;2.11989006210797e-10!GO:0009059;macromolecule biosynthetic process;2.37397173419824e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.88722401933094e-10!GO:0048193;Golgi vesicle transport;3.24954942029731e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;5.54643508052123e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.02074622371805e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.05373539485868e-10!GO:0007399;nervous system development;6.97719231801608e-10!GO:0044445;cytosolic part;8.03435694841309e-10!GO:0019941;modification-dependent protein catabolic process;8.22734040946057e-10!GO:0043632;modification-dependent macromolecule catabolic process;8.22734040946057e-10!GO:0044257;cellular protein catabolic process;1.20779466329045e-09!GO:0044249;cellular biosynthetic process;1.22887786901507e-09!GO:0016044;membrane organization and biogenesis;1.59787338606652e-09!GO:0022618;protein-RNA complex assembly;2.52403851933943e-09!GO:0007010;cytoskeleton organization and biogenesis;2.5861545260063e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.83323072452849e-09!GO:0006605;protein targeting;3.35202210141899e-09!GO:0051082;unfolded protein binding;4.45888389606603e-09!GO:0031980;mitochondrial lumen;5.03413209257518e-09!GO:0005759;mitochondrial matrix;5.03413209257518e-09!GO:0030036;actin cytoskeleton organization and biogenesis;5.08371016702824e-09!GO:0003924;GTPase activity;5.91572216211646e-09!GO:0005768;endosome;6.42369823493029e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.24284588064533e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.04170293263561e-09!GO:0016604;nuclear body;8.9036356590566e-09!GO:0044265;cellular macromolecule catabolic process;9.54636638233764e-09!GO:0019829;cation-transporting ATPase activity;1.11674353817198e-08!GO:0008565;protein transporter activity;1.88149766363613e-08!GO:0006461;protein complex assembly;1.89577200506927e-08!GO:0000502;proteasome complex (sensu Eukaryota);2.03564595330353e-08!GO:0019899;enzyme binding;2.32345958499336e-08!GO:0005525;GTP binding;2.37942707856747e-08!GO:0016607;nuclear speck;2.80452904628938e-08!GO:0008135;translation factor activity, nucleic acid binding;3.06441296548033e-08!GO:0006810;transport;3.44376658992858e-08!GO:0016310;phosphorylation;3.67798832361242e-08!GO:0030135;coated vesicle;5.03994364892761e-08!GO:0043285;biopolymer catabolic process;5.04630756759944e-08!GO:0048523;negative regulation of cellular process;8.55292983966037e-08!GO:0030029;actin filament-based process;9.03043718817916e-08!GO:0030163;protein catabolic process;1.08501299555874e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.15201970446016e-07!GO:0032940;secretion by cell;1.22355257792723e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.41705851096956e-07!GO:0031252;leading edge;1.53027852450581e-07!GO:0032559;adenyl ribonucleotide binding;1.87346831644053e-07!GO:0044431;Golgi apparatus part;2.02263971662196e-07!GO:0051179;localization;3.34078316172613e-07!GO:0015986;ATP synthesis coupled proton transport;3.45348775343212e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.45348775343212e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;3.70067726519431e-07!GO:0000375;RNA splicing, via transesterification reactions;3.70067726519431e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.70067726519431e-07!GO:0006913;nucleocytoplasmic transport;4.43165914202269e-07!GO:0015935;small ribosomal subunit;4.71773300542981e-07!GO:0007242;intracellular signaling cascade;4.71773300542981e-07!GO:0032561;guanyl ribonucleotide binding;4.71773300542981e-07!GO:0019001;guanyl nucleotide binding;4.71773300542981e-07!GO:0008639;small protein conjugating enzyme activity;5.07198674905649e-07!GO:0008287;protein serine/threonine phosphatase complex;5.13137409031144e-07!GO:0005783;endoplasmic reticulum;5.23053389065113e-07!GO:0005524;ATP binding;5.30144018426516e-07!GO:0004842;ubiquitin-protein ligase activity;6.66133487908027e-07!GO:0051169;nuclear transport;7.38595056392642e-07!GO:0003712;transcription cofactor activity;1.07486497106658e-06!GO:0008047;enzyme activator activity;1.1632136807999e-06!GO:0019717;synaptosome;1.19136530399234e-06!GO:0015630;microtubule cytoskeleton;1.21570344543318e-06!GO:0003779;actin binding;1.24938375837676e-06!GO:0030554;adenyl nucleotide binding;1.28780928831691e-06!GO:0019787;small conjugating protein ligase activity;1.32152171649497e-06!GO:0006446;regulation of translational initiation;1.37931476340826e-06!GO:0009057;macromolecule catabolic process;1.48455099228164e-06!GO:0007265;Ras protein signal transduction;1.50639041856424e-06!GO:0006897;endocytosis;1.71497574428987e-06!GO:0010324;membrane invagination;1.71497574428987e-06!GO:0044248;cellular catabolic process;1.77681767174205e-06!GO:0048519;negative regulation of biological process;2.62136552584267e-06!GO:0016070;RNA metabolic process;2.70426027431358e-06!GO:0016564;transcription repressor activity;2.94879323190111e-06!GO:0051234;establishment of localization;3.77113978246038e-06!GO:0043005;neuron projection;4.3888963635436e-06!GO:0051186;cofactor metabolic process;5.28392708120589e-06!GO:0044440;endosomal part;5.33147804406168e-06!GO:0010008;endosome membrane;5.33147804406168e-06!GO:0000902;cell morphogenesis;5.42812366913214e-06!GO:0032989;cellular structure morphogenesis;5.42812366913214e-06!GO:0005096;GTPase activator activity;5.66490734064269e-06!GO:0048475;coated membrane;5.68009792502675e-06!GO:0030117;membrane coat;5.68009792502675e-06!GO:0031965;nuclear membrane;5.72097826391352e-06!GO:0005730;nucleolus;5.82788402369869e-06!GO:0046034;ATP metabolic process;6.2761765328946e-06!GO:0005635;nuclear envelope;6.8461871386722e-06!GO:0015631;tubulin binding;7.44179380762051e-06!GO:0003743;translation initiation factor activity;7.44179380762051e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.44179380762051e-06!GO:0006413;translational initiation;8.11562645506092e-06!GO:0006754;ATP biosynthetic process;9.69072102877412e-06!GO:0006753;nucleoside phosphate metabolic process;9.69072102877412e-06!GO:0015934;large ribosomal subunit;9.74921545730648e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.10698069451164e-05!GO:0005905;coated pit;1.1350875084138e-05!GO:0051056;regulation of small GTPase mediated signal transduction;1.15280407573672e-05!GO:0048471;perinuclear region of cytoplasm;1.18623946941261e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.18623946941261e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.18623946941261e-05!GO:0016881;acid-amino acid ligase activity;1.2107381766586e-05!GO:0030027;lamellipodium;1.33075307706529e-05!GO:0009060;aerobic respiration;1.40143225486699e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.4990936795565e-05!GO:0050789;regulation of biological process;1.52657420687207e-05!GO:0016568;chromatin modification;1.65330220811026e-05!GO:0000139;Golgi membrane;1.72453995272209e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.76996276949167e-05!GO:0045333;cellular respiration;2.12886256455164e-05!GO:0009150;purine ribonucleotide metabolic process;2.1311504357165e-05!GO:0050794;regulation of cellular process;2.15152198633845e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.17599912865926e-05!GO:0017038;protein import;2.19264646805973e-05!GO:0009141;nucleoside triphosphate metabolic process;2.32990775088309e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.32990775088309e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.53088315895386e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.53088315895386e-05!GO:0006163;purine nucleotide metabolic process;2.86170013691648e-05!GO:0006366;transcription from RNA polymerase II promoter;2.93780363123438e-05!GO:0045786;negative regulation of progression through cell cycle;2.95015629267308e-05!GO:0042623;ATPase activity, coupled;3.09341704098781e-05!GO:0030136;clathrin-coated vesicle;3.09341704098781e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.13441798687546e-05!GO:0016887;ATPase activity;3.22128752988974e-05!GO:0006164;purine nucleotide biosynthetic process;3.36413101670604e-05!GO:0005769;early endosome;3.49835361387107e-05!GO:0005770;late endosome;3.78051993162753e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.87615940703546e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.87615940703546e-05!GO:0009055;electron carrier activity;4.09781397818152e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.13179610142244e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.46025803287604e-05!GO:0005874;microtubule;5.09604591699743e-05!GO:0032446;protein modification by small protein conjugation;5.81767596903335e-05!GO:0045259;proton-transporting ATP synthase complex;6.19710627773127e-05!GO:0051246;regulation of protein metabolic process;6.41320490597562e-05!GO:0005761;mitochondrial ribosome;6.80452096469604e-05!GO:0000313;organellar ribosome;6.80452096469604e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.96006858169227e-05!GO:0006323;DNA packaging;7.38570826788274e-05!GO:0009259;ribonucleotide metabolic process;8.97863912035418e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.07458018131981e-05!GO:0005085;guanyl-nucleotide exchange factor activity;9.50528186891142e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.9053991237775e-05!GO:0016567;protein ubiquitination;0.000105294841806404!GO:0006099;tricarboxylic acid cycle;0.000113568095276346!GO:0046356;acetyl-CoA catabolic process;0.000113568095276346!GO:0003714;transcription corepressor activity;0.000120319921284031!GO:0009966;regulation of signal transduction;0.000130706477309157!GO:0008219;cell death;0.000136758835897607!GO:0016265;death;0.000136758835897607!GO:0004721;phosphoprotein phosphatase activity;0.000160765011105748!GO:0005793;ER-Golgi intermediate compartment;0.000164611771276099!GO:0000245;spliceosome assembly;0.000164611771276099!GO:0030120;vesicle coat;0.000180516267133932!GO:0030662;coated vesicle membrane;0.000180516267133932!GO:0009260;ribonucleotide biosynthetic process;0.0001966818643476!GO:0000159;protein phosphatase type 2A complex;0.000198218917834721!GO:0006732;coenzyme metabolic process;0.000198218917834721!GO:0009109;coenzyme catabolic process;0.000226470615503998!GO:0012501;programmed cell death;0.000228097211599902!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000242631592967307!GO:0005798;Golgi-associated vesicle;0.000252745082441007!GO:0008017;microtubule binding;0.00025476078911135!GO:0006915;apoptosis;0.000270418521115892!GO:0044432;endoplasmic reticulum part;0.000284299467254091!GO:0016311;dephosphorylation;0.000294350870141298!GO:0048468;cell development;0.000310145476774557!GO:0016301;kinase activity;0.000315063251925515!GO:0030425;dendrite;0.000320227973358318!GO:0000151;ubiquitin ligase complex;0.00036030405280822!GO:0005773;vacuole;0.00036030405280822!GO:0016791;phosphoric monoester hydrolase activity;0.000376397089546481!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000379050479556817!GO:0015399;primary active transmembrane transporter activity;0.000379050479556817!GO:0009892;negative regulation of metabolic process;0.000386671019935327!GO:0019208;phosphatase regulator activity;0.000402568596261985!GO:0006613;cotranslational protein targeting to membrane;0.000432149850883081!GO:0043492;ATPase activity, coupled to movement of substances;0.000438250953995342!GO:0006606;protein import into nucleus;0.000467874550734218!GO:0004674;protein serine/threonine kinase activity;0.000505132606010808!GO:0051187;cofactor catabolic process;0.000516446644977891!GO:0006403;RNA localization;0.000516446644977891!GO:0044453;nuclear membrane part;0.000521633642237729!GO:0006084;acetyl-CoA metabolic process;0.000521986186873405!GO:0048489;synaptic vesicle transport;0.000529413398065696!GO:0008154;actin polymerization and/or depolymerization;0.000542144641957028!GO:0050767;regulation of neurogenesis;0.00054408488106033!GO:0043623;cellular protein complex assembly;0.000556084611706778!GO:0006259;DNA metabolic process;0.000556144240722584!GO:0003729;mRNA binding;0.000569836612249452!GO:0031901;early endosome membrane;0.000615011017582928!GO:0046578;regulation of Ras protein signal transduction;0.000623362340721438!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000632174499668742!GO:0051170;nuclear import;0.000637602730624921!GO:0016481;negative regulation of transcription;0.000647575223483838!GO:0007266;Rho protein signal transduction;0.00065859348244439!GO:0050657;nucleic acid transport;0.000660703949839531!GO:0051236;establishment of RNA localization;0.000660703949839531!GO:0050658;RNA transport;0.000660703949839531!GO:0008601;protein phosphatase type 2A regulator activity;0.000673173887015622!GO:0019904;protein domain specific binding;0.000690202508411993!GO:0006470;protein amino acid dephosphorylation;0.000706091756009986!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000741933627215887!GO:0016197;endosome transport;0.000799950645584375!GO:0003676;nucleic acid binding;0.000889417997294684!GO:0031072;heat shock protein binding;0.000915153966898238!GO:0006888;ER to Golgi vesicle-mediated transport;0.00094460263966372!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103062566910661!GO:0005643;nuclear pore;0.00106952576223641!GO:0030867;rough endoplasmic reticulum membrane;0.00109548003346868!GO:0022890;inorganic cation transmembrane transporter activity;0.0010978469228308!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00121000488897484!GO:0030133;transport vesicle;0.00128171338946176!GO:0004722;protein serine/threonine phosphatase activity;0.00130113899373248!GO:0006607;NLS-bearing substrate import into nucleus;0.00132327525054025!GO:0016050;vesicle organization and biogenesis;0.00133859050424928!GO:0001726;ruffle;0.00138205045063905!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00138924630998762!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00141444112381205!GO:0003724;RNA helicase activity;0.001417387503754!GO:0005741;mitochondrial outer membrane;0.00142950134207917!GO:0030118;clathrin coat;0.00147013983787161!GO:0006752;group transfer coenzyme metabolic process;0.00150237708140338!GO:0007019;microtubule depolymerization;0.00150237708140338!GO:0019888;protein phosphatase regulator activity;0.00153295973996504!GO:0043566;structure-specific DNA binding;0.00153421819715415!GO:0019902;phosphatase binding;0.00156427379216593!GO:0005100;Rho GTPase activator activity;0.0016747648344064!GO:0009056;catabolic process;0.00172718835159313!GO:0005938;cell cortex;0.00178192561550107!GO:0008026;ATP-dependent helicase activity;0.0018224421585843!GO:0006916;anti-apoptosis;0.0018224421585843!GO:0043069;negative regulation of programmed cell death;0.00187052578806428!GO:0030426;growth cone;0.00209897367402455!GO:0043066;negative regulation of apoptosis;0.00211151902931028!GO:0005791;rough endoplasmic reticulum;0.00211156026721669!GO:0022406;membrane docking;0.00212185464601214!GO:0048278;vesicle docking;0.00212185464601214!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00213494634620838!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00215591209294034!GO:0031324;negative regulation of cellular metabolic process;0.00221934861970543!GO:0030427;site of polarized growth;0.00228289428809208!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00229470552941001!GO:0000323;lytic vacuole;0.0023527636994426!GO:0005764;lysosome;0.0023527636994426!GO:0048699;generation of neurons;0.00249474964593405!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00251670042966357!GO:0006904;vesicle docking during exocytosis;0.00254926049641776!GO:0003713;transcription coactivator activity;0.00258675747330191!GO:0005789;endoplasmic reticulum membrane;0.00260553663400701!GO:0008286;insulin receptor signaling pathway;0.0026624994500742!GO:0045055;regulated secretory pathway;0.00267712534811664!GO:0042802;identical protein binding;0.0027398457277815!GO:0005875;microtubule associated complex;0.00274232924856547!GO:0030532;small nuclear ribonucleoprotein complex;0.00275202512006419!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00285461609617596!GO:0022008;neurogenesis;0.00302178181813205!GO:0031968;organelle outer membrane;0.00307687837678641!GO:0045892;negative regulation of transcription, DNA-dependent;0.00308258044418048!GO:0051087;chaperone binding;0.00308258044418048!GO:0006402;mRNA catabolic process;0.00312049513581786!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00312999424203103!GO:0008361;regulation of cell size;0.00328521589478007!GO:0051726;regulation of cell cycle;0.00345647184102783!GO:0004386;helicase activity;0.00345987828690446!GO:0019867;outer membrane;0.00345987828690446!GO:0007272;ensheathment of neurons;0.00371081031104066!GO:0008366;axon ensheathment;0.00371081031104066!GO:0008654;phospholipid biosynthetic process;0.00373673685332089!GO:0006650;glycerophospholipid metabolic process;0.00385733290040302!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00396049997718546!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00396049997718546!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00396049997718546!GO:0015980;energy derivation by oxidation of organic compounds;0.00408261677684239!GO:0031114;regulation of microtubule depolymerization;0.00408261677684239!GO:0007026;negative regulation of microtubule depolymerization;0.00408261677684239!GO:0051188;cofactor biosynthetic process;0.00418010769852972!GO:0065007;biological regulation;0.00418702925200861!GO:0008139;nuclear localization sequence binding;0.00423573696852137!GO:0030041;actin filament polymerization;0.00430611384763338!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0043337147035965!GO:0005099;Ras GTPase activator activity;0.0043773721039408!GO:0051261;protein depolymerization;0.00457094654343982!GO:0000074;regulation of progression through cell cycle;0.00470648104728672!GO:0005813;centrosome;0.00499247682704138!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00502857981793873!GO:0004812;aminoacyl-tRNA ligase activity;0.00502857981793873!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00502857981793873!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00553797677735684!GO:0051028;mRNA transport;0.0056187898167363!GO:0001508;regulation of action potential;0.00578175821110857!GO:0003697;single-stranded DNA binding;0.00578175821110857!GO:0051276;chromosome organization and biogenesis;0.00581099028551919!GO:0005048;signal sequence binding;0.00618812505143203!GO:0007269;neurotransmitter secretion;0.00646792473476187!GO:0033673;negative regulation of kinase activity;0.00646792473476187!GO:0006469;negative regulation of protein kinase activity;0.00646792473476187!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00653361633463667!GO:0007049;cell cycle;0.00660197886349922!GO:0016049;cell growth;0.00660197886349922!GO:0030030;cell projection organization and biogenesis;0.00666476856022019!GO:0048858;cell projection morphogenesis;0.00666476856022019!GO:0032990;cell part morphogenesis;0.00666476856022019!GO:0005839;proteasome core complex (sensu Eukaryota);0.00689514990832779!GO:0008021;synaptic vesicle;0.00734289111160519!GO:0051168;nuclear export;0.00737953608949387!GO:0030182;neuron differentiation;0.0075127034304621!GO:0007243;protein kinase cascade;0.00752576633411003!GO:0050811;GABA receptor binding;0.00752668737789438!GO:0006612;protein targeting to membrane;0.00759640781977036!GO:0031902;late endosome membrane;0.00788544623334179!GO:0016740;transferase activity;0.00807611936609205!GO:0043087;regulation of GTPase activity;0.00823541846636429!GO:0012506;vesicle membrane;0.00823541846636429!GO:0044448;cell cortex part;0.00878699323814101!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00878709960294255!GO:0004667;prostaglandin-D synthase activity;0.00878709960294255!GO:0050802;circadian sleep/wake cycle, sleep;0.00878709960294255!GO:0022410;circadian sleep/wake cycle process;0.00878709960294255!GO:0042749;regulation of circadian sleep/wake cycle;0.00878709960294255!GO:0043038;amino acid activation;0.00889059262249709!GO:0006418;tRNA aminoacylation for protein translation;0.00889059262249709!GO:0043039;tRNA aminoacylation;0.00889059262249709!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00906165861424152!GO:0006891;intra-Golgi vesicle-mediated transport;0.00912919263787891!GO:0051920;peroxiredoxin activity;0.00946385537508091!GO:0042578;phosphoric ester hydrolase activity;0.00946385537508091!GO:0051427;hormone receptor binding;0.00947622783226999!GO:0005815;microtubule organizing center;0.00986057455017748!GO:0006414;translational elongation;0.00999289381442787!GO:0016363;nuclear matrix;0.0100161968271576!GO:0046467;membrane lipid biosynthetic process;0.0101777502692045!GO:0043209;myelin sheath;0.0101794045815805!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0101794045815805!GO:0055083;monovalent inorganic anion homeostasis;0.0101794045815805!GO:0055064;chloride ion homeostasis;0.0101794045815805!GO:0030644;cellular chloride ion homeostasis;0.0101794045815805!GO:0032011;ARF protein signal transduction;0.0105585523758634!GO:0032012;regulation of ARF protein signal transduction;0.0105585523758634!GO:0051789;response to protein stimulus;0.0110885031115814!GO:0006986;response to unfolded protein;0.0110885031115814!GO:0008186;RNA-dependent ATPase activity;0.0111725949546089!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0113102448861974!GO:0005869;dynactin complex;0.0116232873272868!GO:0051348;negative regulation of transferase activity;0.0117376623015994!GO:0007017;microtubule-based process;0.0117852485855526!GO:0019887;protein kinase regulator activity;0.0118907090346227!GO:0051020;GTPase binding;0.0119449187399918!GO:0048487;beta-tubulin binding;0.0122765038366747!GO:0006887;exocytosis;0.0123751202534154!GO:0009108;coenzyme biosynthetic process;0.0125497163674619!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0128499481417093!GO:0065009;regulation of a molecular function;0.0130112814514721!GO:0006892;post-Golgi vesicle-mediated transport;0.0145623990118604!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.014565303452558!GO:0033043;regulation of organelle organization and biogenesis;0.014565303452558!GO:0043021;ribonucleoprotein binding;0.0147004730748542!GO:0015629;actin cytoskeleton;0.0150522176681358!GO:0035257;nuclear hormone receptor binding;0.0156368480065387!GO:0005885;Arp2/3 protein complex;0.0161045376097897!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0161970289727229!GO:0048500;signal recognition particle;0.0173663377857361!GO:0006643;membrane lipid metabolic process;0.0176747864368147!GO:0001666;response to hypoxia;0.0176747864368147!GO:0044433;cytoplasmic vesicle part;0.0176747864368147!GO:0030742;GTP-dependent protein binding;0.0176747864368147!GO:0035035;histone acetyltransferase binding;0.0179066947428626!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0179755507935178!GO:0019198;transmembrane receptor protein phosphatase activity;0.0179755507935178!GO:0004672;protein kinase activity;0.0182140537883234!GO:0046488;phosphatidylinositol metabolic process;0.0187744407876642!GO:0004183;carboxypeptidase E activity;0.0188208197385433!GO:0030070;insulin processing;0.0188208197385433!GO:0051252;regulation of RNA metabolic process;0.0197210693049754!GO:0006333;chromatin assembly or disassembly;0.0197210693049754!GO:0000118;histone deacetylase complex;0.0197330603203455!GO:0005667;transcription factor complex;0.0199831347051324!GO:0030660;Golgi-associated vesicle membrane;0.0199831347051324!GO:0005774;vacuolar membrane;0.0206514905699571!GO:0050839;cell adhesion molecule binding;0.0210664044360061!GO:0006468;protein amino acid phosphorylation;0.0212388510356748!GO:0000059;protein import into nucleus, docking;0.0212388510356748!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0212388510356748!GO:0017166;vinculin binding;0.0212388510356748!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0215310379854744!GO:0030384;phosphoinositide metabolic process;0.0219639412000646!GO:0019903;protein phosphatase binding;0.022236955186094!GO:0007050;cell cycle arrest;0.0227352544914544!GO:0003746;translation elongation factor activity;0.0238479036197191!GO:0005868;cytoplasmic dynein complex;0.0238479036197191!GO:0030132;clathrin coat of coated pit;0.0241351810769779!GO:0000904;cellular morphogenesis during differentiation;0.0243328344375971!GO:0000062;acyl-CoA binding;0.0249541814495834!GO:0043086;negative regulation of catalytic activity;0.0250278507465076!GO:0030424;axon;0.0251742079825992!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0254406622572524!GO:0019894;kinesin binding;0.0255765408910893!GO:0004298;threonine endopeptidase activity;0.0255765408910893!GO:0042026;protein refolding;0.0262171109675427!GO:0031124;mRNA 3'-end processing;0.0264206909951685!GO:0043488;regulation of mRNA stability;0.0264206909951685!GO:0043487;regulation of RNA stability;0.0264206909951685!GO:0048666;neuron development;0.0271318630306404!GO:0004004;ATP-dependent RNA helicase activity;0.0271351203375577!GO:0030258;lipid modification;0.0271994771319953!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0273043089117301!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0273043089117301!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0274204818412412!GO:0030137;COPI-coated vesicle;0.0275498290189484!GO:0007034;vacuolar transport;0.0275994209803909!GO:0048667;neuron morphogenesis during differentiation;0.02801418625048!GO:0048812;neurite morphogenesis;0.02801418625048!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0285441679714316!GO:0006401;RNA catabolic process;0.0285441679714316!GO:0019207;kinase regulator activity;0.0290742415406657!GO:0031267;small GTPase binding;0.0296870084356936!GO:0005516;calmodulin binding;0.0305182812757085!GO:0030658;transport vesicle membrane;0.0305641401024536!GO:0003690;double-stranded DNA binding;0.031116035664768!GO:0005092;GDP-dissociation inhibitor activity;0.0315454285543059!GO:0008022;protein C-terminus binding;0.0327634972835022!GO:0046930;pore complex;0.0328588889243824!GO:0016859;cis-trans isomerase activity;0.032903289558996!GO:0043407;negative regulation of MAP kinase activity;0.0345882286102955!GO:0001505;regulation of neurotransmitter levels;0.0346520153669707!GO:0042552;myelination;0.0347455360768217!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0350622030829342!GO:0019911;structural constituent of myelin sheath;0.0350622030829342!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0351598697181497!GO:0042995;cell projection;0.035809072988882!GO:0031371;ubiquitin conjugating enzyme complex;0.0371041185050348!GO:0008088;axon cargo transport;0.0378161566379128!GO:0003711;transcription elongation regulator activity;0.0381762344175434!GO:0032535;regulation of cellular component size;0.0384625905364562!GO:0031175;neurite development;0.0388442219390147!GO:0006376;mRNA splice site selection;0.0392650062749402!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0392650062749402!GO:0005765;lysosomal membrane;0.0397017300810713!GO:0048167;regulation of synaptic plasticity;0.0397574922795793!GO:0043681;protein import into mitochondrion;0.0399079583908398!GO:0042254;ribosome biogenesis and assembly;0.0400137718340128!GO:0030911;TPR domain binding;0.0401319790873542!GO:0001558;regulation of cell growth;0.0402640874581742!GO:0035023;regulation of Rho protein signal transduction;0.0410869308895382!GO:0051287;NAD binding;0.0410869308895382!GO:0030659;cytoplasmic vesicle membrane;0.041209425090602!GO:0030031;cell projection biogenesis;0.0416520110244305!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.042349664026879!GO:0030832;regulation of actin filament length;0.0427683480136392!GO:0051540;metal cluster binding;0.0434058854846264!GO:0051536;iron-sulfur cluster binding;0.0434058854846264!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0445344348918272!GO:0045047;protein targeting to ER;0.0445344348918272!GO:0004423;iduronate-2-sulfatase activity;0.0456573577878133!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0460594395271917!GO:0065002;intracellular protein transport across a membrane;0.0460785922466728!GO:0008250;oligosaccharyl transferase complex;0.0460832009329844!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0469813325322547!GO:0017016;Ras GTPase binding;0.0470447782650381!GO:0009117;nucleotide metabolic process;0.0480666484330918!GO:0030119;AP-type membrane coat adaptor complex;0.0491089214797834!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0495260177225652!GO:0000287;magnesium ion binding;0.049984090765054 | |||
|sample_id=10153 | |sample_id=10153 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=hippocampus | |sample_tissue=hippocampus | ||
|top_motifs=DBP:3.75729266515;HBP1_HMGB_SSRP1_UBTF:3.63197516257;RREB1:3.38330996847;ZFP161:3.35470630331;REST:3.34216664679;NHLH1,2:3.29017586802;OCT4_SOX2{dimer}:3.27825972769;CUX2:3.27336129986;PRDM1:3.22446564282;HOXA9_MEIS1:3.16901630452;SOX2:3.15243781181;MYFfamily:3.13065927488;FOXD3:3.09424626996;EGR1..3:3.07150329539;PRRX1,2:3.06875178361;RFX2..5_RFXANK_RFXAP:2.99440200203;GATA4:2.97218317674;MED-1{core}:2.92558988028;POU5F1:2.83523036742;NKX3-2:2.82006267749;MZF1:2.81643289038;GTF2I:2.80392442351;RFX1:2.78998255566;ATF2:2.78150966064;ZBTB6:2.7484871801;PATZ1:2.72095986506;TFAP2B:2.67151630585;SOX5:2.65588361984;MTE{core}:2.62247254905;ZNF384:2.57424085361;POU6F1:2.49321385364;AHR_ARNT_ARNT2:2.45714582221;MTF1:2.41227347589;SOX{8,9,10}:2.20785179369;PAX6:2.19217616371;FOXP1:2.17328541812;HOX{A4,D4}:2.15988277447;PAX4:2.15682591118;HIC1:2.12650745238;BPTF:2.10385712463;NFIX:2.07738796807;TGIF1:2.04857454667;PAX5:2.0116421911;MAZ:2.01139809661;IKZF2:2.01050881809;HMGA1,2:1.95445553849;FOXM1:1.95054894532;BREu{core}:1.89873018142;KLF4:1.87406459864;NKX6-1,2:1.84944207106;NANOG:1.82880512187;POU3F1..4:1.8161566507;RBPJ:1.81351647365;LMO2:1.75675686113;EP300:1.69734447119;GFI1B:1.68844725766;TEF:1.6266455882;FOXP3:1.60939961241;AR:1.59376872252;SMAD1..7,9:1.58764776322;SP1:1.4923991167;ARID5B:1.47801217295;NFIL3:1.3970264747;T:1.37547986457;NRF1:1.36905918354;POU1F1:1.35869926794;CDC5L:1.31972660082;GTF2A1,2:1.31375303466;GCM1,2:1.31250006342;HMX1:1.2810299517;EBF1:1.26366390243;MAFB:1.25788456074;SOX17:1.25209297129;ZIC1..3:1.24294437779;TLX2:1.23749255042;HAND1,2:1.23295541486;ZNF423:1.23198871244;FOX{F1,F2,J1}:1.23111505724;ZBTB16:1.23034530077;ADNP_IRX_SIX_ZHX:1.21922665643;NR3C1:1.18387521933;FOXQ1:1.17272977598;TOPORS:1.07590883311;TFDP1:1.07354436496;FOX{D1,D2}:1.02733092823;TFAP2{A,C}:1.01701147127;MYBL2:0.988185084686;FOXO1,3,4:0.957494183972;ONECUT1,2:0.954245350148;XBP1:0.927307342668;TLX1..3_NFIC{dimer}:0.924006185392;LEF1_TCF7_TCF7L1,2:0.906465038043;ZNF143:0.856068512817;FOX{I1,J2}:0.79437146398;ALX1:0.698231564393;GFI1:0.645408672458;JUN:0.582213109817;CRX:0.571965065097;STAT2,4,6:0.566066686194;STAT1,3:0.539577639733;SPZ1:0.533117976808;MYOD1:0.517100372374;SREBF1,2:0.505809433467;NKX2-3_NKX2-5:0.489716466588;GZF1:0.487151390468;PDX1:0.482127878773;HSF1,2:0.407331559244;FOXA2:0.377460265402;ZNF238:0.357725966882;CREB1:0.334135491909;ZEB1:0.314990615991;XCPE1{core}:0.307785326906;FOXN1:0.28766741952;UFEwm:0.282465296707;HOX{A6,A7,B6,B7}:0.28219618596;IRF7:0.239322040439;IRF1,2:0.228931401843;LHX3,4:0.177069848861;MEF2{A,B,C,D}:0.17497880858;FOXL1:0.161207598156;VSX1,2:0.158941994541;IKZF1:0.0801394736387;DMAP1_NCOR{1,2}_SMARC:0.0669198478902;AIRE:0.0465621950959;PAX2:0.0331521487943;ESRRA:-0.0216974126387;YY1:-0.0278283796391;RORA:-0.096912155155;ATF5_CREB3:-0.113283684577;NFY{A,B,C}:-0.134458625682;PITX1..3:-0.168183489619;PBX1:-0.208808331097;NFATC1..3:-0.223882736243;CDX1,2,4:-0.258260189681;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278755460435;SPI1:-0.303462004619;ATF4:-0.348363658509;PAX1,9:-0.373982939646;NKX2-2,8:-0.441266842302;NFE2L2:-0.477168568381;SPIB:-0.523663398903;bHLH_family:-0.538610535474;CEBPA,B_DDIT3:-0.561556496041;SNAI1..3:-0.616191606479;PAX3,7:-0.642118046108;EVI1:-0.666398642261;NANOG{mouse}:-0.688382449498;PAX8:-0.760535649637;TFAP4:-0.788339700071;ETS1,2:-0.791960669916;TFCP2:-0.81817971579;HNF4A_NR2F1,2:-0.823780546484;GATA6:-0.82584679122;NFE2:-0.838919766361;TEAD1:-0.901130340975;ATF6:-0.911213131129;HNF1A:-0.911262345479;TP53:-1.01376943982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05971280084;TBX4,5:-1.10157872677;NKX3-1:-1.11528019443;HIF1A:-1.14823587653;RUNX1..3:-1.1554437644;ZNF148:-1.16942200489;RXR{A,B,G}:-1.17568428715;POU2F1..3:-1.19178824593;NFE2L1:-1.21528059516;NFKB1_REL_RELA:-1.23565978591;BACH2:-1.24135610574;TAL1_TCF{3,4,12}:-1.26282222752;E2F1..5:-1.30260110448;FOS_FOS{B,L1}_JUN{B,D}:-1.3118737746;ESR1:-1.35511035014;FOSL2:-1.35706216675;ALX4:-1.38818512737;GLI1..3:-1.39107400061;ELK1,4_GABP{A,B1}:-1.39383050136;ELF1,2,4:-1.39405455696;TBP:-1.43818770784;NR5A1,2:-1.493650727;RXRA_VDR{dimer}:-1.56720444913;NKX2-1,4:-1.58883698495;MYB:-1.64059356415;HLF:-1.67374014623;NR1H4:-1.69888039273;SRF:-1.77289776924;NR6A1:-1.81051581083;PPARG:-1.89854391911;HOX{A5,B5}:-2.53507935642;STAT5{A,B}:-2.55486792004;EN1,2:-2.62734708095;HES1:-2.69129760201 | |top_motifs=DBP:3.75729266515;HBP1_HMGB_SSRP1_UBTF:3.63197516257;RREB1:3.38330996847;ZFP161:3.35470630331;REST:3.34216664679;NHLH1,2:3.29017586802;OCT4_SOX2{dimer}:3.27825972769;CUX2:3.27336129986;PRDM1:3.22446564282;HOXA9_MEIS1:3.16901630452;SOX2:3.15243781181;MYFfamily:3.13065927488;FOXD3:3.09424626996;EGR1..3:3.07150329539;PRRX1,2:3.06875178361;RFX2..5_RFXANK_RFXAP:2.99440200203;GATA4:2.97218317674;MED-1{core}:2.92558988028;POU5F1:2.83523036742;NKX3-2:2.82006267749;MZF1:2.81643289038;GTF2I:2.80392442351;RFX1:2.78998255566;ATF2:2.78150966064;ZBTB6:2.7484871801;PATZ1:2.72095986506;TFAP2B:2.67151630585;SOX5:2.65588361984;MTE{core}:2.62247254905;ZNF384:2.57424085361;POU6F1:2.49321385364;AHR_ARNT_ARNT2:2.45714582221;MTF1:2.41227347589;SOX{8,9,10}:2.20785179369;PAX6:2.19217616371;FOXP1:2.17328541812;HOX{A4,D4}:2.15988277447;PAX4:2.15682591118;HIC1:2.12650745238;BPTF:2.10385712463;NFIX:2.07738796807;TGIF1:2.04857454667;PAX5:2.0116421911;MAZ:2.01139809661;IKZF2:2.01050881809;HMGA1,2:1.95445553849;FOXM1:1.95054894532;BREu{core}:1.89873018142;KLF4:1.87406459864;NKX6-1,2:1.84944207106;NANOG:1.82880512187;POU3F1..4:1.8161566507;RBPJ:1.81351647365;LMO2:1.75675686113;EP300:1.69734447119;GFI1B:1.68844725766;TEF:1.6266455882;FOXP3:1.60939961241;AR:1.59376872252;SMAD1..7,9:1.58764776322;SP1:1.4923991167;ARID5B:1.47801217295;NFIL3:1.3970264747;T:1.37547986457;NRF1:1.36905918354;POU1F1:1.35869926794;CDC5L:1.31972660082;GTF2A1,2:1.31375303466;GCM1,2:1.31250006342;HMX1:1.2810299517;EBF1:1.26366390243;MAFB:1.25788456074;SOX17:1.25209297129;ZIC1..3:1.24294437779;TLX2:1.23749255042;HAND1,2:1.23295541486;ZNF423:1.23198871244;FOX{F1,F2,J1}:1.23111505724;ZBTB16:1.23034530077;ADNP_IRX_SIX_ZHX:1.21922665643;NR3C1:1.18387521933;FOXQ1:1.17272977598;TOPORS:1.07590883311;TFDP1:1.07354436496;FOX{D1,D2}:1.02733092823;TFAP2{A,C}:1.01701147127;MYBL2:0.988185084686;FOXO1,3,4:0.957494183972;ONECUT1,2:0.954245350148;XBP1:0.927307342668;TLX1..3_NFIC{dimer}:0.924006185392;LEF1_TCF7_TCF7L1,2:0.906465038043;ZNF143:0.856068512817;FOX{I1,J2}:0.79437146398;ALX1:0.698231564393;GFI1:0.645408672458;JUN:0.582213109817;CRX:0.571965065097;STAT2,4,6:0.566066686194;STAT1,3:0.539577639733;SPZ1:0.533117976808;MYOD1:0.517100372374;SREBF1,2:0.505809433467;NKX2-3_NKX2-5:0.489716466588;GZF1:0.487151390468;PDX1:0.482127878773;HSF1,2:0.407331559244;FOXA2:0.377460265402;ZNF238:0.357725966882;CREB1:0.334135491909;ZEB1:0.314990615991;XCPE1{core}:0.307785326906;FOXN1:0.28766741952;UFEwm:0.282465296707;HOX{A6,A7,B6,B7}:0.28219618596;IRF7:0.239322040439;IRF1,2:0.228931401843;LHX3,4:0.177069848861;MEF2{A,B,C,D}:0.17497880858;FOXL1:0.161207598156;VSX1,2:0.158941994541;IKZF1:0.0801394736387;DMAP1_NCOR{1,2}_SMARC:0.0669198478902;AIRE:0.0465621950959;PAX2:0.0331521487943;ESRRA:-0.0216974126387;YY1:-0.0278283796391;RORA:-0.096912155155;ATF5_CREB3:-0.113283684577;NFY{A,B,C}:-0.134458625682;PITX1..3:-0.168183489619;PBX1:-0.208808331097;NFATC1..3:-0.223882736243;CDX1,2,4:-0.258260189681;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.278755460435;SPI1:-0.303462004619;ATF4:-0.348363658509;PAX1,9:-0.373982939646;NKX2-2,8:-0.441266842302;NFE2L2:-0.477168568381;SPIB:-0.523663398903;bHLH_family:-0.538610535474;CEBPA,B_DDIT3:-0.561556496041;SNAI1..3:-0.616191606479;PAX3,7:-0.642118046108;EVI1:-0.666398642261;NANOG{mouse}:-0.688382449498;PAX8:-0.760535649637;TFAP4:-0.788339700071;ETS1,2:-0.791960669916;TFCP2:-0.81817971579;HNF4A_NR2F1,2:-0.823780546484;GATA6:-0.82584679122;NFE2:-0.838919766361;TEAD1:-0.901130340975;ATF6:-0.911213131129;HNF1A:-0.911262345479;TP53:-1.01376943982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05971280084;TBX4,5:-1.10157872677;NKX3-1:-1.11528019443;HIF1A:-1.14823587653;RUNX1..3:-1.1554437644;ZNF148:-1.16942200489;RXR{A,B,G}:-1.17568428715;POU2F1..3:-1.19178824593;NFE2L1:-1.21528059516;NFKB1_REL_RELA:-1.23565978591;BACH2:-1.24135610574;TAL1_TCF{3,4,12}:-1.26282222752;E2F1..5:-1.30260110448;FOS_FOS{B,L1}_JUN{B,D}:-1.3118737746;ESR1:-1.35511035014;FOSL2:-1.35706216675;ALX4:-1.38818512737;GLI1..3:-1.39107400061;ELK1,4_GABP{A,B1}:-1.39383050136;ELF1,2,4:-1.39405455696;TBP:-1.43818770784;NR5A1,2:-1.493650727;RXRA_VDR{dimer}:-1.56720444913;NKX2-1,4:-1.58883698495;MYB:-1.64059356415;HLF:-1.67374014623;NR1H4:-1.69888039273;SRF:-1.77289776924;NR6A1:-1.81051581083;PPARG:-1.89854391911;HOX{A5,B5}:-2.53507935642;STAT5{A,B}:-2.55486792004;EN1,2:-2.62734708095;HES1:-2.69129760201 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10153-102I9;search_select_hide=table117:FF:10153-102I9 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | hippocampus, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12312 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12312
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12312
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0445 |
| 10 | 10 | 0.05 |
| 100 | 100 | 0.369 |
| 101 | 101 | 0.503 |
| 102 | 102 | 0.983 |
| 103 | 103 | 0.116 |
| 104 | 104 | 0.107 |
| 105 | 105 | 0.16 |
| 106 | 106 | 0.0475 |
| 107 | 107 | 0.141 |
| 108 | 108 | 0.881 |
| 109 | 109 | 0.00128 |
| 11 | 11 | 0.01 |
| 110 | 110 | 0.0501 |
| 111 | 111 | 0.0881 |
| 112 | 112 | 0.281 |
| 113 | 113 | 0.656 |
| 114 | 114 | 0.104 |
| 115 | 115 | 0.974 |
| 116 | 116 | 0.182 |
| 117 | 117 | 0.0123 |
| 118 | 118 | 0.139 |
| 119 | 119 | 0.215 |
| 12 | 12 | 0.587 |
| 120 | 120 | 0.208 |
| 121 | 121 | 0.335 |
| 122 | 122 | 0.737 |
| 123 | 123 | 0.977 |
| 124 | 124 | 0.39 |
| 125 | 125 | 0.318 |
| 126 | 126 | 0.0413 |
| 127 | 127 | 0.405 |
| 128 | 128 | 0.244 |
| 129 | 129 | 0.546 |
| 13 | 13 | 0.00261 |
| 130 | 130 | 0.304 |
| 131 | 131 | 0.0603 |
| 132 | 132 | 0.491 |
| 133 | 133 | 0.113 |
| 134 | 134 | 0.577 |
| 135 | 135 | 0.481 |
| 136 | 136 | 0.00235 |
| 137 | 137 | 0.724 |
| 138 | 138 | 0.807 |
| 139 | 139 | 0.168 |
| 14 | 14 | 0.819 |
| 140 | 140 | 0.744 |
| 141 | 141 | 0.385 |
| 142 | 142 | 0.601 |
| 143 | 143 | 0.0334 |
| 144 | 144 | 0.992 |
| 145 | 145 | 0.185 |
| 146 | 146 | 0.543 |
| 147 | 147 | 0.899 |
| 148 | 148 | 0.212 |
| 149 | 149 | 0.275 |
| 15 | 15 | 0.0736 |
| 150 | 150 | 0.164 |
| 151 | 151 | 0.565 |
| 152 | 152 | 0.0954 |
| 153 | 153 | 0.996 |
| 154 | 154 | 0.54 |
| 155 | 155 | 0.583 |
| 156 | 156 | 0.339 |
| 157 | 157 | 0.44 |
| 158 | 158 | 0.405 |
| 159 | 159 | 0.0271 |
| 16 | 16 | 0.0432 |
| 160 | 160 | 0.218 |
| 161 | 161 | 0.198 |
| 162 | 162 | 0.745 |
| 163 | 163 | 0.896 |
| 164 | 164 | 0.0354 |
| 165 | 165 | 0.0959 |
| 166 | 166 | 0.713 |
| 167 | 167 | 0.734 |
| 168 | 168 | 0.459 |
| 169 | 169 | 0.00981 |
| 17 | 17 | 0.107 |
| 18 | 18 | 0.0817 |
| 19 | 19 | 0.197 |
| 2 | 2 | 0.847 |
| 20 | 20 | 0.204 |
| 21 | 21 | 0.0456 |
| 22 | 22 | 0.224 |
| 23 | 23 | 0.412 |
| 24 | 24 | 0.0517 |
| 25 | 25 | 0.42 |
| 26 | 26 | 9.72582e-4 |
| 27 | 27 | 0.702 |
| 28 | 28 | 0.674 |
| 29 | 29 | 0.00663 |
| 3 | 3 | 0.0464 |
| 30 | 30 | 0.849 |
| 31 | 31 | 0.858 |
| 32 | 32 | 0.0256 |
| 33 | 33 | 0.0466 |
| 34 | 34 | 0.684 |
| 35 | 35 | 0.582 |
| 36 | 36 | 0.136 |
| 37 | 37 | 0.0353 |
| 38 | 38 | 0.353 |
| 39 | 39 | 0.33 |
| 4 | 4 | 0.635 |
| 40 | 40 | 0.0278 |
| 41 | 41 | 0.272 |
| 42 | 42 | 0.199 |
| 43 | 43 | 0.126 |
| 44 | 44 | 0.151 |
| 45 | 45 | 0.696 |
| 46 | 46 | 0.0729 |
| 47 | 47 | 0.058 |
| 48 | 48 | 0.0518 |
| 49 | 49 | 0.214 |
| 5 | 5 | 0.62 |
| 50 | 50 | 0.384 |
| 51 | 51 | 0.373 |
| 52 | 52 | 0.546 |
| 53 | 53 | 0.874 |
| 54 | 54 | 0.369 |
| 55 | 55 | 0.725 |
| 56 | 56 | 0.503 |
| 57 | 57 | 0.348 |
| 58 | 58 | 0.292 |
| 59 | 59 | 0.0644 |
| 6 | 6 | 0.909 |
| 60 | 60 | 0.0682 |
| 61 | 61 | 0.0988 |
| 62 | 62 | 0.185 |
| 63 | 63 | 0.196 |
| 64 | 64 | 0.154 |
| 65 | 65 | 0.248 |
| 66 | 66 | 0.117 |
| 67 | 67 | 0.257 |
| 68 | 68 | 0.173 |
| 69 | 69 | 0.342 |
| 7 | 7 | 0.0554 |
| 70 | 70 | 0.0497 |
| 71 | 71 | 0.0109 |
| 72 | 72 | 0.39 |
| 73 | 73 | 0.0295 |
| 74 | 74 | 0.97 |
| 75 | 75 | 0.0259 |
| 76 | 76 | 0.352 |
| 77 | 77 | 0.171 |
| 78 | 78 | 0.00124 |
| 79 | 79 | 0.271 |
| 8 | 8 | 0.0782 |
| 80 | 80 | 0.439 |
| 81 | 81 | 0.606 |
| 82 | 82 | 0.608 |
| 83 | 83 | 0.017 |
| 84 | 84 | 0.556 |
| 85 | 85 | 0.242 |
| 86 | 86 | 0.209 |
| 87 | 87 | 1.81986e-4 |
| 88 | 88 | 0.807 |
| 89 | 89 | 0.279 |
| 9 | 9 | 0.413 |
| 90 | 90 | 0.105 |
| 91 | 91 | 0.875 |
| 92 | 92 | 0.486 |
| 93 | 93 | 0.977 |
| 94 | 94 | 0.184 |
| 95 | 95 | 0.00919 |
| 96 | 96 | 0.909 |
| 97 | 97 | 0.796 |
| 98 | 98 | 0.252 |
| 99 | 99 | 0.567 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12312
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0010153 hippocampus - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010153 (hippocampus - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
