FF:11363-117I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004755 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004755 | ||
|accession_numbers=CAGE;DRX008487;DRR009359;DRZ000784;DRZ002169;DRZ012134;DRZ013519 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037201;DRR041567;DRZ007209 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor2.CNhs11987.11363-117I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11363-117I4 | |id=FF:11363-117I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |||
|library_id=CNhs11987 | |||
|library_id_phase_based=2:CNhs11987 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11363 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GAGTGG.11363 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11363 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GAGTGG.11363 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor2 | |name=Smooth Muscle Cells - Coronary Artery, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11987,LSID836,release011,COMPLETED | |profile_hcage=CNhs11987,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,1.05721910895173,0.465151290063124,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18125823079682,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,1.33327274336432,0,0,0,0,0,0,0,0,0.182023922503502,0,0,0,0,0,0,0,0.768728125389701,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145369952352104,0,0,0,-0.0584468268118252,0.168836944105207,0,0.412477887232674,0,0,-0.0980353512377064,0.171601575648918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109865349693876,0,0,0,1.01138797115366,1.32763350945243,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA350-R10a | |rna_catalog_number=CA350-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I4 | |rna_tube_id=117I4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GAGTGG | |||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.78201227049554e-241!GO:0005737;cytoplasm;3.96590266727552e-205!GO:0044444;cytoplasmic part;4.86940538491687e-159!GO:0043226;organelle;3.32183418016975e-125!GO:0043229;intracellular organelle;6.12198122306288e-125!GO:0043231;intracellular membrane-bound organelle;1.29519944549447e-119!GO:0043227;membrane-bound organelle;2.36115360674813e-119!GO:0044422;organelle part;2.55715759763443e-118!GO:0044446;intracellular organelle part;3.3048784843798e-117!GO:0032991;macromolecular complex;2.72376875419456e-85!GO:0005739;mitochondrion;4.11258672395318e-81!GO:0030529;ribonucleoprotein complex;3.76371912277255e-76!GO:0005515;protein binding;2.16976359798087e-70!GO:0031090;organelle membrane;3.19689917933895e-58!GO:0043233;organelle lumen;2.84581074161671e-57!GO:0031974;membrane-enclosed lumen;2.84581074161671e-57!GO:0044238;primary metabolic process;4.22105412941287e-57!GO:0044237;cellular metabolic process;6.36062984409962e-57!GO:0005840;ribosome;6.87366563282201e-56!GO:0044429;mitochondrial part;6.14424854797661e-55!GO:0019538;protein metabolic process;1.15190452236641e-54!GO:0009058;biosynthetic process;2.63804407191241e-53!GO:0006412;translation;2.63804407191241e-53!GO:0003723;RNA binding;1.41767950209015e-50!GO:0003735;structural constituent of ribosome;8.3404772798344e-50!GO:0044260;cellular macromolecule metabolic process;2.4675318708229e-48!GO:0044249;cellular biosynthetic process;2.60264571919148e-48!GO:0044267;cellular protein metabolic process;1.74805844752688e-47!GO:0009059;macromolecule biosynthetic process;1.1479733800977e-45!GO:0043170;macromolecule metabolic process;1.92095882980746e-45!GO:0043234;protein complex;2.92615654061306e-43!GO:0005829;cytosol;1.02756359871529e-42!GO:0044428;nuclear part;1.15702075560217e-41!GO:0033279;ribosomal subunit;1.25050467668139e-41!GO:0031967;organelle envelope;1.82694484841803e-41!GO:0031975;envelope;3.97865809050117e-41!GO:0015031;protein transport;1.89261485939426e-39!GO:0016043;cellular component organization and biogenesis;1.89261485939426e-39!GO:0005740;mitochondrial envelope;1.00089102050505e-37!GO:0033036;macromolecule localization;3.31454949167199e-37!GO:0045184;establishment of protein localization;3.70570533523271e-37!GO:0008104;protein localization;1.76548441508473e-36!GO:0031966;mitochondrial membrane;2.22570002622137e-35!GO:0019866;organelle inner membrane;5.35936695473817e-32!GO:0005743;mitochondrial inner membrane;9.33792083446262e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.23607916239541e-31!GO:0006396;RNA processing;4.10794011561452e-31!GO:0046907;intracellular transport;9.11917348067731e-29!GO:0031981;nuclear lumen;3.62990355149467e-27!GO:0044445;cytosolic part;1.55005869625265e-26!GO:0065003;macromolecular complex assembly;3.00322728933972e-26!GO:0005783;endoplasmic reticulum;7.00872488427842e-26!GO:0006886;intracellular protein transport;9.74644643807468e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.68201854767006e-25!GO:0006119;oxidative phosphorylation;2.57177398254886e-25!GO:0022607;cellular component assembly;3.37179655403119e-23!GO:0044455;mitochondrial membrane part;1.01938547630293e-22!GO:0043228;non-membrane-bound organelle;2.65553614621298e-22!GO:0043232;intracellular non-membrane-bound organelle;2.65553614621298e-22!GO:0031980;mitochondrial lumen;6.52122076110178e-22!GO:0005759;mitochondrial matrix;6.52122076110178e-22!GO:0016071;mRNA metabolic process;1.26245131792465e-21!GO:0015934;large ribosomal subunit;2.34804523024364e-21!GO:0015935;small ribosomal subunit;3.18408564220368e-21!GO:0005634;nucleus;5.87265463478023e-21!GO:0012505;endomembrane system;9.11297539220689e-21!GO:0006996;organelle organization and biogenesis;9.16509224746954e-21!GO:0008380;RNA splicing;2.26630847506729e-20!GO:0005746;mitochondrial respiratory chain;2.50112030452114e-20!GO:0044432;endoplasmic reticulum part;8.89573899933028e-20!GO:0006457;protein folding;1.30917969352394e-19!GO:0051649;establishment of cellular localization;7.72726816749783e-19!GO:0016462;pyrophosphatase activity;8.86515585738834e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.26262170308677e-18!GO:0051641;cellular localization;1.26262170308677e-18!GO:0006397;mRNA processing;1.45272748240687e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.49020274793857e-18!GO:0017111;nucleoside-triphosphatase activity;1.56188125738516e-18!GO:0051186;cofactor metabolic process;1.63773865755422e-18!GO:0005794;Golgi apparatus;6.01908226594312e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.55929336757254e-17!GO:0050136;NADH dehydrogenase (quinone) activity;6.73294884006156e-17!GO:0003954;NADH dehydrogenase activity;6.73294884006156e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.73294884006156e-17!GO:0048770;pigment granule;2.82564826818956e-16!GO:0042470;melanosome;2.82564826818956e-16!GO:0000166;nucleotide binding;3.90985692309525e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.19988126033318e-16!GO:0016491;oxidoreductase activity;1.4260466319874e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.52553161285569e-15!GO:0042775;organelle ATP synthesis coupled electron transport;2.59021206574091e-15!GO:0042773;ATP synthesis coupled electron transport;2.59021206574091e-15!GO:0016874;ligase activity;2.95445750585369e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.2923523276721e-15!GO:0022618;protein-RNA complex assembly;3.89220593126546e-15!GO:0030964;NADH dehydrogenase complex (quinone);6.02074848677282e-15!GO:0045271;respiratory chain complex I;6.02074848677282e-15!GO:0005747;mitochondrial respiratory chain complex I;6.02074848677282e-15!GO:0005761;mitochondrial ribosome;6.18192572262565e-15!GO:0000313;organellar ribosome;6.18192572262565e-15!GO:0005681;spliceosome;7.0349647553499e-15!GO:0005654;nucleoplasm;7.24273111356296e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.24273111356296e-15!GO:0005730;nucleolus;8.52517617644759e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.76842535843493e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.27433829094824e-14!GO:0016192;vesicle-mediated transport;2.38184904386943e-14!GO:0005789;endoplasmic reticulum membrane;3.94084323366435e-14!GO:0051082;unfolded protein binding;3.99251233161186e-14!GO:0009055;electron carrier activity;4.74806932366681e-14!GO:0044248;cellular catabolic process;6.49195909233452e-14!GO:0006605;protein targeting;7.24356663968246e-14!GO:0008135;translation factor activity, nucleic acid binding;8.63141283630516e-14!GO:0048193;Golgi vesicle transport;1.85346456521015e-13!GO:0006732;coenzyme metabolic process;1.95276814710087e-13!GO:0044265;cellular macromolecule catabolic process;3.81133495175485e-13!GO:0009057;macromolecule catabolic process;5.85584394219971e-13!GO:0044451;nucleoplasm part;9.18762015505712e-13!GO:0043283;biopolymer metabolic process;9.66805836608938e-13!GO:0008134;transcription factor binding;1.52359027713353e-12!GO:0017076;purine nucleotide binding;1.78098366213551e-12!GO:0043285;biopolymer catabolic process;2.22523586222511e-12!GO:0010467;gene expression;2.95784366456095e-12!GO:0032553;ribonucleotide binding;4.2504697187209e-12!GO:0032555;purine ribonucleotide binding;4.2504697187209e-12!GO:0006512;ubiquitin cycle;5.30040688792314e-12!GO:0012501;programmed cell death;6.75055687796875e-12!GO:0006915;apoptosis;1.19741486184729e-11!GO:0009259;ribonucleotide metabolic process;1.83504563497384e-11!GO:0043412;biopolymer modification;2.26196555272876e-11!GO:0005793;ER-Golgi intermediate compartment;3.67854863727024e-11!GO:0006091;generation of precursor metabolites and energy;4.08136596495938e-11!GO:0003743;translation initiation factor activity;4.65742284114516e-11!GO:0009150;purine ribonucleotide metabolic process;4.97784871323497e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.5484690732539e-11!GO:0042254;ribosome biogenesis and assembly;8.85881756969367e-11!GO:0006163;purine nucleotide metabolic process;9.00511630924025e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;9.61868816456225e-11!GO:0008219;cell death;1.39352686837385e-10!GO:0016265;death;1.39352686837385e-10!GO:0044257;cellular protein catabolic process;1.50574845016504e-10!GO:0019941;modification-dependent protein catabolic process;1.60964039907909e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.60964039907909e-10!GO:0006464;protein modification process;1.9401685525542e-10!GO:0009260;ribonucleotide biosynthetic process;2.54313234309964e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.14313473752625e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.40115704683092e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.49536558546243e-10!GO:0006259;DNA metabolic process;4.71050585266136e-10!GO:0006413;translational initiation;4.86919000292569e-10!GO:0030163;protein catabolic process;5.87536603670208e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.89382966990162e-10!GO:0009141;nucleoside triphosphate metabolic process;6.03610017604538e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.14577946981594e-10!GO:0009144;purine nucleoside triphosphate metabolic process;6.14577946981594e-10!GO:0006164;purine nucleotide biosynthetic process;6.6244193921161e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.69584939927429e-10!GO:0000375;RNA splicing, via transesterification reactions;7.69584939927429e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.69584939927429e-10!GO:0005524;ATP binding;1.05007313669502e-09!GO:0030554;adenyl nucleotide binding;1.08728586877127e-09!GO:0030120;vesicle coat;1.52362055999401e-09!GO:0030662;coated vesicle membrane;1.52362055999401e-09!GO:0032559;adenyl ribonucleotide binding;1.88114668391908e-09!GO:0051188;cofactor biosynthetic process;2.34645105152551e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.58204113922355e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.58204113922355e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.58204113922355e-09!GO:0009056;catabolic process;2.81953709917934e-09!GO:0015986;ATP synthesis coupled proton transport;2.87878068658223e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.87878068658223e-09!GO:0019829;cation-transporting ATPase activity;3.42547496034705e-09!GO:0016887;ATPase activity;3.54222341154957e-09!GO:0046034;ATP metabolic process;4.0815090984646e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.11558675896741e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.11558675896741e-09!GO:0042623;ATPase activity, coupled;6.15728852242271e-09!GO:0008639;small protein conjugating enzyme activity;6.57251519436034e-09!GO:0048475;coated membrane;7.25481571700043e-09!GO:0030117;membrane coat;7.25481571700043e-09!GO:0006446;regulation of translational initiation;7.92248652397629e-09!GO:0006461;protein complex assembly;8.92816893659423e-09!GO:0004842;ubiquitin-protein ligase activity;1.04574014293076e-08!GO:0019787;small conjugating protein ligase activity;1.20727676842583e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.34079595689771e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.41022981518523e-08!GO:0006913;nucleocytoplasmic transport;1.44571947686808e-08!GO:0003712;transcription cofactor activity;1.47397381743962e-08!GO:0009060;aerobic respiration;1.69539519494092e-08!GO:0008565;protein transporter activity;1.7576819586191e-08!GO:0048523;negative regulation of cellular process;1.89266860246928e-08!GO:0006754;ATP biosynthetic process;2.91572832928992e-08!GO:0006753;nucleoside phosphate metabolic process;2.91572832928992e-08!GO:0051246;regulation of protein metabolic process;2.97881449068288e-08!GO:0051169;nuclear transport;2.97881449068288e-08!GO:0017038;protein import;3.59225676067487e-08!GO:0006399;tRNA metabolic process;4.06158119713208e-08!GO:0043687;post-translational protein modification;4.31486733013776e-08!GO:0044431;Golgi apparatus part;4.51731317071442e-08!GO:0043067;regulation of programmed cell death;4.75725414942553e-08!GO:0045333;cellular respiration;5.3265155756434e-08!GO:0016881;acid-amino acid ligase activity;5.91539846625641e-08!GO:0042981;regulation of apoptosis;6.31548878447951e-08!GO:0003924;GTPase activity;6.78880516351588e-08!GO:0007049;cell cycle;8.67695340776104e-08!GO:0016787;hydrolase activity;1.19979863438195e-07!GO:0009117;nucleotide metabolic process;1.28719315315205e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38744333245161e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.43588516625604e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.71140644195659e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.71140644195659e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.71140644195659e-07!GO:0005768;endosome;2.43336748469684e-07!GO:0005788;endoplasmic reticulum lumen;2.50226084710597e-07!GO:0048519;negative regulation of biological process;2.50823599174748e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.72025597178864e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.03861592704916e-07!GO:0006752;group transfer coenzyme metabolic process;3.04715608646492e-07!GO:0007005;mitochondrion organization and biogenesis;3.43567818248158e-07!GO:0043038;amino acid activation;4.33273350474965e-07!GO:0006418;tRNA aminoacylation for protein translation;4.33273350474965e-07!GO:0043039;tRNA aminoacylation;4.33273350474965e-07!GO:0006364;rRNA processing;4.56749227945901e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.24649072273691e-07!GO:0016072;rRNA metabolic process;5.83412088782954e-07!GO:0016740;transferase activity;6.8308712212159e-07!GO:0030532;small nuclear ribonucleoprotein complex;7.05473136506855e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.32109467979369e-07!GO:0015399;primary active transmembrane transporter activity;7.32109467979369e-07!GO:0031988;membrane-bound vesicle;9.10729612581221e-07!GO:0045259;proton-transporting ATP synthase complex;9.9256622919788e-07!GO:0009108;coenzyme biosynthetic process;1.07932284107142e-06!GO:0043069;negative regulation of programmed cell death;1.1387345676081e-06!GO:0005635;nuclear envelope;1.42072612538395e-06!GO:0006916;anti-apoptosis;1.53440059762247e-06!GO:0006118;electron transport;1.62701062163311e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.7854476221454e-06!GO:0043066;negative regulation of apoptosis;1.9077439198396e-06!GO:0051187;cofactor catabolic process;1.9218716121741e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.93365904104245e-06!GO:0044262;cellular carbohydrate metabolic process;2.01840269833021e-06!GO:0008026;ATP-dependent helicase activity;2.07992729235038e-06!GO:0044440;endosomal part;2.31904285808671e-06!GO:0010008;endosome membrane;2.31904285808671e-06!GO:0005770;late endosome;2.44488692610791e-06!GO:0045454;cell redox homeostasis;2.47266545888324e-06!GO:0031982;vesicle;2.48765477619807e-06!GO:0031965;nuclear membrane;2.49170788304922e-06!GO:0031968;organelle outer membrane;2.6326121657068e-06!GO:0031410;cytoplasmic vesicle;2.65528503933225e-06!GO:0006099;tricarboxylic acid cycle;2.73188895305778e-06!GO:0046356;acetyl-CoA catabolic process;2.73188895305778e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;2.99123213657123e-06!GO:0005798;Golgi-associated vesicle;3.57397338643169e-06!GO:0000139;Golgi membrane;4.06786305879259e-06!GO:0044453;nuclear membrane part;4.27905301651564e-06!GO:0006084;acetyl-CoA metabolic process;4.32280683034046e-06!GO:0005762;mitochondrial large ribosomal subunit;4.89497820615994e-06!GO:0000315;organellar large ribosomal subunit;4.89497820615994e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.518198670814e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.66321278221616e-06!GO:0065002;intracellular protein transport across a membrane;6.12728244171415e-06!GO:0009109;coenzyme catabolic process;6.65076617118294e-06!GO:0005741;mitochondrial outer membrane;6.65111547180227e-06!GO:0005905;coated pit;7.29827439208748e-06!GO:0005773;vacuole;7.29827439208748e-06!GO:0043492;ATPase activity, coupled to movement of substances;7.89204574926244e-06!GO:0019867;outer membrane;7.98231798482546e-06!GO:0006323;DNA packaging;8.26141253418461e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;8.39127621847055e-06!GO:0006082;organic acid metabolic process;9.01215779747753e-06!GO:0051726;regulation of cell cycle;1.10327231692698e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;1.10713834035709e-05!GO:0022402;cell cycle process;1.10713834035709e-05!GO:0019752;carboxylic acid metabolic process;1.24581117514787e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.34907766290602e-05!GO:0000278;mitotic cell cycle;1.37325986087601e-05!GO:0000074;regulation of progression through cell cycle;1.43292819336502e-05!GO:0006793;phosphorus metabolic process;1.50665281860588e-05!GO:0006796;phosphate metabolic process;1.50665281860588e-05!GO:0004298;threonine endopeptidase activity;1.52232975480629e-05!GO:0008654;phospholipid biosynthetic process;1.7441298714974e-05!GO:0031252;leading edge;1.78639596310902e-05!GO:0003714;transcription corepressor activity;1.83091630935926e-05!GO:0019843;rRNA binding;1.93788828945408e-05!GO:0004386;helicase activity;2.0223849007598e-05!GO:0016604;nuclear body;2.39006777484303e-05!GO:0016044;membrane organization and biogenesis;2.46669728975485e-05!GO:0048522;positive regulation of cellular process;2.50237832025228e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.66626173894124e-05!GO:0016310;phosphorylation;2.89609341457037e-05!GO:0051170;nuclear import;2.95547990497909e-05!GO:0065004;protein-DNA complex assembly;3.15919571169267e-05!GO:0006606;protein import into nucleus;3.19234371765232e-05!GO:0016779;nucleotidyltransferase activity;3.218088357271e-05!GO:0005643;nuclear pore;4.14179012942286e-05!GO:0008361;regulation of cell size;4.3930290346846e-05!GO:0051789;response to protein stimulus;4.58083051363108e-05!GO:0006986;response to unfolded protein;4.58083051363108e-05!GO:0016853;isomerase activity;4.85454197665855e-05!GO:0005667;transcription factor complex;5.08053763343706e-05!GO:0016049;cell growth;5.11694221061117e-05!GO:0000245;spliceosome assembly;6.44893244491604e-05!GO:0005525;GTP binding;6.59770346387197e-05!GO:0005048;signal sequence binding;6.97057328797069e-05!GO:0046930;pore complex;7.01940366030481e-05!GO:0001558;regulation of cell growth;7.2535657089102e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.4409564532236e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.11787924334465e-05!GO:0008610;lipid biosynthetic process;8.21064025794462e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.22077386053924e-05!GO:0006414;translational elongation;8.39922452643304e-05!GO:0016567;protein ubiquitination;8.93225990070825e-05!GO:0030867;rough endoplasmic reticulum membrane;9.15208878406656e-05!GO:0009165;nucleotide biosynthetic process;9.70397380066184e-05!GO:0000323;lytic vacuole;0.000109229402775274!GO:0005764;lysosome;0.000109229402775274!GO:0030133;transport vesicle;0.000109938414872898!GO:0006366;transcription from RNA polymerase II promoter;0.000132175543910365!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000143295984962847!GO:0032446;protein modification by small protein conjugation;0.000145605889602868!GO:0006974;response to DNA damage stimulus;0.000155600656497274!GO:0003899;DNA-directed RNA polymerase activity;0.000160231731567841!GO:0043284;biopolymer biosynthetic process;0.000160261382603357!GO:0003724;RNA helicase activity;0.000188924383583244!GO:0000314;organellar small ribosomal subunit;0.000195775884433559!GO:0005763;mitochondrial small ribosomal subunit;0.000195775884433559!GO:0032561;guanyl ribonucleotide binding;0.00020799159504302!GO:0019001;guanyl nucleotide binding;0.00020799159504302!GO:0016563;transcription activator activity;0.000211597564551174!GO:0006613;cotranslational protein targeting to membrane;0.000220947302212869!GO:0000151;ubiquitin ligase complex;0.00022376213385675!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000226501476980461!GO:0065009;regulation of a molecular function;0.000254187642559283!GO:0016564;transcription repressor activity;0.00025654871858804!GO:0016568;chromatin modification;0.000275572388784129!GO:0030659;cytoplasmic vesicle membrane;0.000278139749606658!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000310988197577365!GO:0006333;chromatin assembly or disassembly;0.000311469763327385!GO:0022890;inorganic cation transmembrane transporter activity;0.000335211990747281!GO:0007006;mitochondrial membrane organization and biogenesis;0.000359410192574374!GO:0043681;protein import into mitochondrion;0.000359410192574374!GO:0016859;cis-trans isomerase activity;0.00036808527296697!GO:0030663;COPI coated vesicle membrane;0.000377264073909859!GO:0030126;COPI vesicle coat;0.000377264073909859!GO:0003697;single-stranded DNA binding;0.000383260180250899!GO:0006334;nucleosome assembly;0.000387425052629203!GO:0003713;transcription coactivator activity;0.000400151977904163!GO:0030658;transport vesicle membrane;0.000410630553922417!GO:0051276;chromosome organization and biogenesis;0.00042885655722129!GO:0043623;cellular protein complex assembly;0.000432224607459335!GO:0046474;glycerophospholipid biosynthetic process;0.000449056001992499!GO:0030118;clathrin coat;0.000454584811711713!GO:0015992;proton transport;0.000465206261507126!GO:0030176;integral to endoplasmic reticulum membrane;0.000474960961051067!GO:0030137;COPI-coated vesicle;0.00048877108357197!GO:0006818;hydrogen transport;0.000494474433579928!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000494692406322789!GO:0030132;clathrin coat of coated pit;0.000499980326042864!GO:0009719;response to endogenous stimulus;0.000505541690606625!GO:0030029;actin filament-based process;0.000523131487281893!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000523131487281893!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000526099637061896!GO:0015002;heme-copper terminal oxidase activity;0.000526099637061896!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000526099637061896!GO:0004129;cytochrome-c oxidase activity;0.000526099637061896!GO:0043021;ribonucleoprotein binding;0.000543102373555673!GO:0031497;chromatin assembly;0.00054419612782202!GO:0005885;Arp2/3 protein complex;0.000592784971075175!GO:0006626;protein targeting to mitochondrion;0.000643539891996727!GO:0031072;heat shock protein binding;0.000722362319411469!GO:0006778;porphyrin metabolic process;0.000758478257340849!GO:0033013;tetrapyrrole metabolic process;0.000758478257340849!GO:0044433;cytoplasmic vesicle part;0.000761106242260862!GO:0006807;nitrogen compound metabolic process;0.000773032373305232!GO:0007243;protein kinase cascade;0.00082815736700193!GO:0045786;negative regulation of progression through cell cycle;0.00088589994818367!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000887985709224559!GO:0048518;positive regulation of biological process;0.000927918735594635!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000959088279972225!GO:0050662;coenzyme binding;0.000986907764173442!GO:0051920;peroxiredoxin activity;0.00104827847930483!GO:0008632;apoptotic program;0.00105629276112922!GO:0030660;Golgi-associated vesicle membrane;0.00115158318228466!GO:0046467;membrane lipid biosynthetic process;0.00119900737271345!GO:0048468;cell development;0.00131087966360867!GO:0040008;regulation of growth;0.0013330177672497!GO:0031324;negative regulation of cellular metabolic process;0.00137439018501822!GO:0030125;clathrin vesicle coat;0.00150917252119109!GO:0030665;clathrin coated vesicle membrane;0.00150917252119109!GO:0046483;heterocycle metabolic process;0.00151376744851583!GO:0046489;phosphoinositide biosynthetic process;0.0015825309096625!GO:0006839;mitochondrial transport;0.00159804373045268!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00159804373045268!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00159804373045268!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00159804373045268!GO:0042168;heme metabolic process;0.00166540463328849!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00167356780145664!GO:0006979;response to oxidative stress;0.00169428482093988!GO:0016607;nuclear speck;0.00177899253467261!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00183883895468725!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00183883895468725!GO:0030119;AP-type membrane coat adaptor complex;0.00190927161878629!GO:0005769;early endosome;0.00197737309548062!GO:0006281;DNA repair;0.00200917012142784!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00205179511666699!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00205179511666699!GO:0007067;mitosis;0.00214103485710092!GO:0048471;perinuclear region of cytoplasm;0.00220150279027978!GO:0006612;protein targeting to membrane;0.00221497394670629!GO:0008092;cytoskeletal protein binding;0.00221497394670629!GO:0042802;identical protein binding;0.00221497394670629!GO:0009308;amine metabolic process;0.00222892390118946!GO:0005774;vacuolar membrane;0.00223513797177078!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0022787933171421!GO:0008186;RNA-dependent ATPase activity;0.00228416527389561!GO:0031902;late endosome membrane;0.00232896197948269!GO:0046519;sphingoid metabolic process;0.00233798960200514!GO:0006383;transcription from RNA polymerase III promoter;0.00238175279684294!GO:0004177;aminopeptidase activity;0.00243031552927807!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00251070708759064!GO:0000087;M phase of mitotic cell cycle;0.00251230220500077!GO:0030880;RNA polymerase complex;0.0025238273034558!GO:0009892;negative regulation of metabolic process;0.00266788625074868!GO:0005791;rough endoplasmic reticulum;0.00269999976962515!GO:0006779;porphyrin biosynthetic process;0.00272935011378927!GO:0033014;tetrapyrrole biosynthetic process;0.00272935011378927!GO:0006066;alcohol metabolic process;0.00280353145799233!GO:0006007;glucose catabolic process;0.00280613202879121!GO:0019899;enzyme binding;0.00303089480390424!GO:0012506;vesicle membrane;0.00309259265532663!GO:0045045;secretory pathway;0.00320760308840435!GO:0043433;negative regulation of transcription factor activity;0.0033810709968895!GO:0030131;clathrin adaptor complex;0.0033810709968895!GO:0000785;chromatin;0.0033810709968895!GO:0006891;intra-Golgi vesicle-mediated transport;0.00350187397956062!GO:0016126;sterol biosynthetic process;0.00357078895752933!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00368435921340188!GO:0005975;carbohydrate metabolic process;0.0039009180793438!GO:0007264;small GTPase mediated signal transduction;0.00410629120234658!GO:0015630;microtubule cytoskeleton;0.00410629120234658!GO:0019318;hexose metabolic process;0.00473147840473789!GO:0044437;vacuolar part;0.00473147840473789!GO:0006509;membrane protein ectodomain proteolysis;0.00477291716100899!GO:0033619;membrane protein proteolysis;0.00477291716100899!GO:0004004;ATP-dependent RNA helicase activity;0.00480778700513539!GO:0044255;cellular lipid metabolic process;0.00480778700513539!GO:0005996;monosaccharide metabolic process;0.00481578411291074!GO:0008250;oligosaccharyl transferase complex;0.00491726229325311!GO:0048037;cofactor binding;0.00508394064509653!GO:0006595;polyamine metabolic process;0.00539733167923032!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00542043791325293!GO:0008139;nuclear localization sequence binding;0.00542043791325293!GO:0051087;chaperone binding;0.00544212713916539!GO:0008243;plasminogen activator activity;0.00551944417852903!GO:0017166;vinculin binding;0.00570512256389824!GO:0043566;structure-specific DNA binding;0.005834606002036!GO:0030134;ER to Golgi transport vesicle;0.00586931100074129!GO:0006783;heme biosynthetic process;0.00587116541119331!GO:0008047;enzyme activator activity;0.00591348161040646!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00604243748217977!GO:0000428;DNA-directed RNA polymerase complex;0.00604243748217977!GO:0006897;endocytosis;0.00610671092634933!GO:0010324;membrane invagination;0.00610671092634933!GO:0006520;amino acid metabolic process;0.00617845939770287!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00636020564968851!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00650333297168116!GO:0030027;lamellipodium;0.00655822233389785!GO:0004576;oligosaccharyl transferase activity;0.00658352359158836!GO:0000049;tRNA binding;0.00658452803515375!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00671886710653034!GO:0006635;fatty acid beta-oxidation;0.00684204933412038!GO:0007033;vacuole organization and biogenesis;0.00714288666152142!GO:0006672;ceramide metabolic process;0.00714288666152142!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0077429868669052!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00792451221228677!GO:0051427;hormone receptor binding;0.00807518756629119!GO:0008180;signalosome;0.00807530876011769!GO:0030127;COPII vesicle coat;0.00811362807155!GO:0012507;ER to Golgi transport vesicle membrane;0.00811362807155!GO:0050790;regulation of catalytic activity;0.00863720428986453!GO:0031418;L-ascorbic acid binding;0.00885524725427808!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00892995609906941!GO:0007040;lysosome organization and biogenesis;0.00893080915084861!GO:0005684;U2-dependent spliceosome;0.00905570851322222!GO:0005765;lysosomal membrane;0.00906503546618395!GO:0018196;peptidyl-asparagine modification;0.00923532784534265!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00923532784534265!GO:0030308;negative regulation of cell growth;0.00936993197548507!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00989277211192418!GO:0005862;muscle thin filament tropomyosin;0.0101052370025767!GO:0045792;negative regulation of cell size;0.0103445525332951!GO:0008033;tRNA processing;0.0106157483044957!GO:0003746;translation elongation factor activity;0.0107841642641085!GO:0051329;interphase of mitotic cell cycle;0.0108869977902593!GO:0051540;metal cluster binding;0.0109120441060115!GO:0051536;iron-sulfur cluster binding;0.0109120441060115!GO:0006950;response to stress;0.0111474821648896!GO:0006519;amino acid and derivative metabolic process;0.0114217764037532!GO:0005869;dynactin complex;0.0115397427886921!GO:0006629;lipid metabolic process;0.0117123183655409!GO:0006650;glycerophospholipid metabolic process;0.0117950091181141!GO:0044427;chromosomal part;0.0119388151851406!GO:0044452;nucleolar part;0.0119388151851406!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0120222860550669!GO:0032940;secretion by cell;0.0120451399206534!GO:0006260;DNA replication;0.0123242283956572!GO:0009967;positive regulation of signal transduction;0.0123341926893685!GO:0048487;beta-tubulin binding;0.0123696375188541!GO:0051287;NAD binding;0.0123696375188541!GO:0016272;prefoldin complex;0.0123777774005916!GO:0006497;protein amino acid lipidation;0.0125128480182398!GO:0051301;cell division;0.0128805108814194!GO:0000030;mannosyltransferase activity;0.0130636787741708!GO:0006695;cholesterol biosynthetic process;0.0135942928154717!GO:0031301;integral to organelle membrane;0.0136346205247436!GO:0051539;4 iron, 4 sulfur cluster binding;0.0136692805464968!GO:0035257;nuclear hormone receptor binding;0.0136714773095837!GO:0006096;glycolysis;0.0141405810705835!GO:0048500;signal recognition particle;0.0149090048672891!GO:0006506;GPI anchor biosynthetic process;0.0153819752066184!GO:0008154;actin polymerization and/or depolymerization;0.0155777187172903!GO:0018193;peptidyl-amino acid modification;0.0155891730159965!GO:0051168;nuclear export;0.0156242047981557!GO:0005694;chromosome;0.0161877854620973!GO:0043022;ribosome binding;0.0163862506941515!GO:0005758;mitochondrial intermembrane space;0.0164208925486804!GO:0006417;regulation of translation;0.0166938341757676!GO:0001666;response to hypoxia;0.0169577859263688!GO:0031543;peptidyl-proline dioxygenase activity;0.0170048464483977!GO:0043488;regulation of mRNA stability;0.0173338764460798!GO:0043487;regulation of RNA stability;0.0173338764460798!GO:0005813;centrosome;0.01751661819074!GO:0045941;positive regulation of transcription;0.0175265463597838!GO:0051252;regulation of RNA metabolic process;0.0175265463597838!GO:0009889;regulation of biosynthetic process;0.0180478095402856!GO:0007010;cytoskeleton organization and biogenesis;0.0181780821185018!GO:0046365;monosaccharide catabolic process;0.0187674915507774!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0188124229832756!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0189069699525852!GO:0006740;NADPH regeneration;0.0193370292876!GO:0006098;pentose-phosphate shunt;0.0193370292876!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0194122852219909!GO:0019206;nucleoside kinase activity;0.0197887582257707!GO:0006643;membrane lipid metabolic process;0.0197887582257707!GO:0005832;chaperonin-containing T-complex;0.0201609722858808!GO:0022403;cell cycle phase;0.0202030089685556!GO:0051325;interphase;0.0205070733831394!GO:0030503;regulation of cell redox homeostasis;0.02067254370019!GO:0043068;positive regulation of programmed cell death;0.0207126195036372!GO:0043065;positive regulation of apoptosis;0.0208072316217813!GO:0000096;sulfur amino acid metabolic process;0.0213640936743589!GO:0006505;GPI anchor metabolic process;0.0216867152415803!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0222880190973631!GO:0030384;phosphoinositide metabolic process;0.0228134178021997!GO:0019798;procollagen-proline dioxygenase activity;0.0230092463542046!GO:0035035;histone acetyltransferase binding;0.0231512036129916!GO:0030041;actin filament polymerization;0.0233095469704302!GO:0000786;nucleosome;0.0233795313740541!GO:0016197;endosome transport;0.0240462188816675!GO:0000287;magnesium ion binding;0.0241303404536202!GO:0005100;Rho GTPase activator activity;0.0245719579608665!GO:0051098;regulation of binding;0.024754260701853!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.024754260701853!GO:0000059;protein import into nucleus, docking;0.0249803080601569!GO:0045893;positive regulation of transcription, DNA-dependent;0.0257954592025132!GO:0031529;ruffle organization and biogenesis;0.0264182781907693!GO:0003711;transcription elongation regulator activity;0.0264182781907693!GO:0035258;steroid hormone receptor binding;0.0264799538755487!GO:0019320;hexose catabolic process;0.0264996619809287!GO:0008538;proteasome activator activity;0.0272209859679067!GO:0050178;phenylpyruvate tautomerase activity;0.0274954362435509!GO:0030128;clathrin coat of endocytic vesicle;0.0280889829300638!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0280889829300638!GO:0030122;AP-2 adaptor complex;0.0280889829300638!GO:0001726;ruffle;0.0289891859972963!GO:0031272;regulation of pseudopodium formation;0.0289891859972963!GO:0031269;pseudopodium formation;0.0289891859972963!GO:0031344;regulation of cell projection organization and biogenesis;0.0289891859972963!GO:0031268;pseudopodium organization and biogenesis;0.0289891859972963!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0289891859972963!GO:0031274;positive regulation of pseudopodium formation;0.0289891859972963!GO:0007021;tubulin folding;0.0290489389781074!GO:0031970;organelle envelope lumen;0.0291443055920486!GO:0008637;apoptotic mitochondrial changes;0.0294700411350666!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0295242647764487!GO:0006308;DNA catabolic process;0.029614765914664!GO:0031326;regulation of cellular biosynthetic process;0.0301466081878266!GO:0003729;mRNA binding;0.0301466081878266!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0310239049078507!GO:0042158;lipoprotein biosynthetic process;0.031143247787164!GO:0005096;GTPase activator activity;0.0312497506047238!GO:0000209;protein polyubiquitination;0.0312823940441405!GO:0007030;Golgi organization and biogenesis;0.0318196897293011!GO:0007242;intracellular signaling cascade;0.0321155013492635!GO:0048144;fibroblast proliferation;0.0324307035141462!GO:0048145;regulation of fibroblast proliferation;0.0324307035141462!GO:0008312;7S RNA binding;0.0325715037984362!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.032999059851081!GO:0045047;protein targeting to ER;0.032999059851081!GO:0003756;protein disulfide isomerase activity;0.0331156769232086!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0331156769232086!GO:0005815;microtubule organizing center;0.0331156769232086!GO:0006892;post-Golgi vesicle-mediated transport;0.033741679916711!GO:0005092;GDP-dissociation inhibitor activity;0.0338155862498307!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0338508573451054!GO:0010257;NADH dehydrogenase complex assembly;0.0338508573451054!GO:0033108;mitochondrial respiratory chain complex assembly;0.0338508573451054!GO:0006289;nucleotide-excision repair;0.0339233973931768!GO:0006790;sulfur metabolic process;0.0340250078813579!GO:0051128;regulation of cellular component organization and biogenesis;0.0341166716665995!GO:0006403;RNA localization;0.0341166716665995!GO:0000339;RNA cap binding;0.036501764622463!GO:0050811;GABA receptor binding;0.0370308949345212!GO:0051059;NF-kappaB binding;0.0370308949345212!GO:0050657;nucleic acid transport;0.0381454939184092!GO:0051236;establishment of RNA localization;0.0381454939184092!GO:0050658;RNA transport;0.0381454939184092!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0382473821503303!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0384032913639207!GO:0045926;negative regulation of growth;0.0384967921401271!GO:0046822;regulation of nucleocytoplasmic transport;0.0387082886198931!GO:0046164;alcohol catabolic process;0.0387286700495948!GO:0016125;sterol metabolic process;0.0398990134447014!GO:0030433;ER-associated protein catabolic process;0.0402513905386642!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0402513905386642!GO:0007050;cell cycle arrest;0.0405927308423822!GO:0006458;'de novo' protein folding;0.0415834448143413!GO:0051084;'de novo' posttranslational protein folding;0.0415834448143413!GO:0045334;clathrin-coated endocytic vesicle;0.0416490675605894!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.042430177967311!GO:0030032;lamellipodium biogenesis;0.0428235667013895!GO:0006984;ER-nuclear signaling pathway;0.0428235667013895!GO:0007265;Ras protein signal transduction;0.0437067788594993!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0439618436357701!GO:0006749;glutathione metabolic process;0.0442313146974856!GO:0005099;Ras GTPase activator activity;0.0451428539266902!GO:0006401;RNA catabolic process;0.0451428539266902!GO:0006354;RNA elongation;0.04524738653226!GO:0006518;peptide metabolic process;0.0461629450383062!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0461629450383062!GO:0006352;transcription initiation;0.0462611672076888!GO:0000082;G1/S transition of mitotic cell cycle;0.0465018136690251!GO:0030911;TPR domain binding;0.0466256199579484!GO:0016481;negative regulation of transcription;0.0467436610190145!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.04680414999281!GO:0016860;intramolecular oxidoreductase activity;0.0471272189587268!GO:0001516;prostaglandin biosynthetic process;0.0471272189587268!GO:0046457;prostanoid biosynthetic process;0.0471272189587268!GO:0051101;regulation of DNA binding;0.0471272189587268!GO:0030145;manganese ion binding;0.0471272189587268!GO:0006607;NLS-bearing substrate import into nucleus;0.0474977668267891!GO:0008147;structural constituent of bone;0.0483120286606335!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0491622017294266!GO:0008629;induction of apoptosis by intracellular signals;0.0491622017294266!GO:0009303;rRNA transcription;0.0496226603598488!GO:0016363;nuclear matrix;0.0496829439365751!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0497610032819766 | |||
|sample_id=11363 | |sample_id=11363 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=coronary artery | |sample_tissue=coronary artery | ||
|top_motifs=PPARG:2.00824986977;GLI1..3:1.58833419998;GTF2A1,2:1.48506982573;POU3F1..4:1.40899676245;ZIC1..3:1.22472631874;CRX:1.2003623937;HES1:1.19239473146;IKZF1:1.18288618494;ALX4:1.1460542915;ZBTB6:1.14604098197;ONECUT1,2:1.11144269368;EBF1:1.09359667127;NR5A1,2:1.05776992243;HMX1:1.0324530927;HOXA9_MEIS1:1.00888197739;ZNF238:1.00645620757;ZNF423:0.92980130128;LHX3,4:0.898736611028;NKX2-2,8:0.881673758539;ATF6:0.870707647081;HIF1A:0.869793792319;TLX1..3_NFIC{dimer}:0.830919623217;AR:0.817825917466;GZF1:0.803004067233;NKX3-1:0.783728318456;XBP1:0.780912963637;TFAP4:0.778961291903;NFE2L1:0.778544439065;MAFB:0.754738868945;GCM1,2:0.717445931316;POU6F1:0.698884629279;TBP:0.6842316743;PAX1,9:0.681031033557;RXR{A,B,G}:0.667555159477;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653886127386;NR3C1:0.584116150435;SRF:0.547205219102;STAT5{A,B}:0.546998607886;SMAD1..7,9:0.528123822873;TEAD1:0.524760086517;TP53:0.521041648976;HOX{A5,B5}:0.514537707447;ZNF148:0.512515795756;TFAP2{A,C}:0.510851340479;TFCP2:0.46733832546;UFEwm:0.459831950354;FOX{I1,J2}:0.457214997038;TBX4,5:0.451933144249;REST:0.436244901436;TEF:0.395115162648;NANOG:0.387983252737;NKX3-2:0.387121687181;NFE2L2:0.382749279634;CDC5L:0.377049553124;bHLH_family:0.373768707652;FOSL2:0.366607718156;HOX{A6,A7,B6,B7}:0.353072620047;RXRA_VDR{dimer}:0.347441873629;LMO2:0.281972773709;TAL1_TCF{3,4,12}:0.27963423489;LEF1_TCF7_TCF7L1,2:0.277127514453;NR6A1:0.272615133999;HLF:0.24560158801;ESRRA:0.238704980857;PBX1:0.230370847097;GATA6:0.219253835161;NANOG{mouse}:0.210304893999;EN1,2:0.207499918598;POU2F1..3:0.20406027601;NHLH1,2:0.193832600186;BACH2:0.175310067581;HNF1A:0.158996741939;HIC1:0.141773719218;AIRE:0.141471965207;FOS_FOS{B,L1}_JUN{B,D}:0.108295642245;TLX2:0.106152816363;NFATC1..3:0.0965736366788;MYBL2:0.0939007696207;GTF2I:0.0769706638324;SPZ1:0.0598795113573;KLF4:0.0578979955486;PAX5:0.0285260047135;HAND1,2:0.0218982211304;GFI1B:0.0170649636795;FOXL1:-0.00923709451954;MYFfamily:-0.0110147010029;MEF2{A,B,C,D}:-0.0120054149059;ESR1:-0.0205118464982;POU1F1:-0.0378364816847;SOX{8,9,10}:-0.0389548034082;STAT2,4,6:-0.039786116222;ARID5B:-0.0465711201347;MYOD1:-0.0478572789981;HBP1_HMGB_SSRP1_UBTF:-0.0499564518211;JUN:-0.065272056137;FOXQ1:-0.0707675930997;SOX17:-0.0814989862209;MTE{core}:-0.102226109411;ELK1,4_GABP{A,B1}:-0.110940332431;HMGA1,2:-0.112188266816;RUNX1..3:-0.114347275671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.126452471306;SOX2:-0.128726446052;HSF1,2:-0.153332558553;NFKB1_REL_RELA:-0.159098353232;XCPE1{core}:-0.188501428722;NFE2:-0.19261625059;ALX1:-0.195638329066;ZEB1:-0.218927102556;PAX8:-0.226134223513;TOPORS:-0.239177924838;CEBPA,B_DDIT3:-0.257649694596;ZBTB16:-0.268243831335;ATF2:-0.268442141619;MTF1:-0.274602125261;VSX1,2:-0.28285586394;TGIF1:-0.296447662746;YY1:-0.305160064647;HOX{A4,D4}:-0.322240810274;PAX6:-0.323383642608;SPIB:-0.32565088371;ETS1,2:-0.352003452926;SNAI1..3:-0.37466152496;PAX2:-0.383303160091;TFAP2B:-0.384072445011;RFX1:-0.395774365387;NFIX:-0.397219556222;ZNF143:-0.410961326583;PITX1..3:-0.413417807446;NFIL3:-0.442330225339;SOX5:-0.445384390662;FOXA2:-0.451297145371;NKX2-3_NKX2-5:-0.452390319604;HNF4A_NR2F1,2:-0.474125560621;OCT4_SOX2{dimer}:-0.499286941463;GATA4:-0.499731128278;PRRX1,2:-0.509709166886;MAZ:-0.51063979183;FOX{F1,F2,J1}:-0.520795638082;T:-0.523545446316;SPI1:-0.534853054037;ZFP161:-0.541358994451;EVI1:-0.548444221522;ADNP_IRX_SIX_ZHX:-0.548950836809;RREB1:-0.566849598594;PAX3,7:-0.573472969217;AHR_ARNT_ARNT2:-0.580985517003;NR1H4:-0.589189722246;DMAP1_NCOR{1,2}_SMARC:-0.593320250814;FOXM1:-0.605787002913;ELF1,2,4:-0.613124245241;SP1:-0.625535320243;PATZ1:-0.651071586837;CUX2:-0.652264525092;MED-1{core}:-0.678844000059;MZF1:-0.706784583977;PDX1:-0.714337928128;MYB:-0.734262163798;CDX1,2,4:-0.735670642117;EGR1..3:-0.740689839762;PRDM1:-0.758283772113;RORA:-0.768267460529;EP300:-0.784130835306;NRF1:-0.787635559024;ATF4:-0.794715232267;FOX{D1,D2}:-0.814091910169;IKZF2:-0.826108374;FOXO1,3,4:-0.828756151312;FOXN1:-0.85471022769;RFX2..5_RFXANK_RFXAP:-0.924059599892;ATF5_CREB3:-0.925920957517;IRF1,2:-0.944188732132;POU5F1:-0.981053511574;PAX4:-1.00466326411;ZNF384:-1.00938570399;CREB1:-1.01235419038;DBP:-1.01252345297;IRF7:-1.03856048311;GFI1:-1.1733606594;NFY{A,B,C}:-1.25296271887;E2F1..5:-1.27793247042;FOXP3:-1.31709973307;FOXP1:-1.39661550863;NKX6-1,2:-1.41215775573;SREBF1,2:-1.47447584857;BPTF:-1.50379103346;BREu{core}:-1.55101837718;TFDP1:-1.65302976465;RBPJ:-1.70801181629;FOXD3:-1.80847733231;NKX2-1,4:-1.91566474243;STAT1,3:-2.63105126998 | |top_motifs=PPARG:2.00824986977;GLI1..3:1.58833419998;GTF2A1,2:1.48506982573;POU3F1..4:1.40899676245;ZIC1..3:1.22472631874;CRX:1.2003623937;HES1:1.19239473146;IKZF1:1.18288618494;ALX4:1.1460542915;ZBTB6:1.14604098197;ONECUT1,2:1.11144269368;EBF1:1.09359667127;NR5A1,2:1.05776992243;HMX1:1.0324530927;HOXA9_MEIS1:1.00888197739;ZNF238:1.00645620757;ZNF423:0.92980130128;LHX3,4:0.898736611028;NKX2-2,8:0.881673758539;ATF6:0.870707647081;HIF1A:0.869793792319;TLX1..3_NFIC{dimer}:0.830919623217;AR:0.817825917466;GZF1:0.803004067233;NKX3-1:0.783728318456;XBP1:0.780912963637;TFAP4:0.778961291903;NFE2L1:0.778544439065;MAFB:0.754738868945;GCM1,2:0.717445931316;POU6F1:0.698884629279;TBP:0.6842316743;PAX1,9:0.681031033557;RXR{A,B,G}:0.667555159477;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.653886127386;NR3C1:0.584116150435;SRF:0.547205219102;STAT5{A,B}:0.546998607886;SMAD1..7,9:0.528123822873;TEAD1:0.524760086517;TP53:0.521041648976;HOX{A5,B5}:0.514537707447;ZNF148:0.512515795756;TFAP2{A,C}:0.510851340479;TFCP2:0.46733832546;UFEwm:0.459831950354;FOX{I1,J2}:0.457214997038;TBX4,5:0.451933144249;REST:0.436244901436;TEF:0.395115162648;NANOG:0.387983252737;NKX3-2:0.387121687181;NFE2L2:0.382749279634;CDC5L:0.377049553124;bHLH_family:0.373768707652;FOSL2:0.366607718156;HOX{A6,A7,B6,B7}:0.353072620047;RXRA_VDR{dimer}:0.347441873629;LMO2:0.281972773709;TAL1_TCF{3,4,12}:0.27963423489;LEF1_TCF7_TCF7L1,2:0.277127514453;NR6A1:0.272615133999;HLF:0.24560158801;ESRRA:0.238704980857;PBX1:0.230370847097;GATA6:0.219253835161;NANOG{mouse}:0.210304893999;EN1,2:0.207499918598;POU2F1..3:0.20406027601;NHLH1,2:0.193832600186;BACH2:0.175310067581;HNF1A:0.158996741939;HIC1:0.141773719218;AIRE:0.141471965207;FOS_FOS{B,L1}_JUN{B,D}:0.108295642245;TLX2:0.106152816363;NFATC1..3:0.0965736366788;MYBL2:0.0939007696207;GTF2I:0.0769706638324;SPZ1:0.0598795113573;KLF4:0.0578979955486;PAX5:0.0285260047135;HAND1,2:0.0218982211304;GFI1B:0.0170649636795;FOXL1:-0.00923709451954;MYFfamily:-0.0110147010029;MEF2{A,B,C,D}:-0.0120054149059;ESR1:-0.0205118464982;POU1F1:-0.0378364816847;SOX{8,9,10}:-0.0389548034082;STAT2,4,6:-0.039786116222;ARID5B:-0.0465711201347;MYOD1:-0.0478572789981;HBP1_HMGB_SSRP1_UBTF:-0.0499564518211;JUN:-0.065272056137;FOXQ1:-0.0707675930997;SOX17:-0.0814989862209;MTE{core}:-0.102226109411;ELK1,4_GABP{A,B1}:-0.110940332431;HMGA1,2:-0.112188266816;RUNX1..3:-0.114347275671;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.126452471306;SOX2:-0.128726446052;HSF1,2:-0.153332558553;NFKB1_REL_RELA:-0.159098353232;XCPE1{core}:-0.188501428722;NFE2:-0.19261625059;ALX1:-0.195638329066;ZEB1:-0.218927102556;PAX8:-0.226134223513;TOPORS:-0.239177924838;CEBPA,B_DDIT3:-0.257649694596;ZBTB16:-0.268243831335;ATF2:-0.268442141619;MTF1:-0.274602125261;VSX1,2:-0.28285586394;TGIF1:-0.296447662746;YY1:-0.305160064647;HOX{A4,D4}:-0.322240810274;PAX6:-0.323383642608;SPIB:-0.32565088371;ETS1,2:-0.352003452926;SNAI1..3:-0.37466152496;PAX2:-0.383303160091;TFAP2B:-0.384072445011;RFX1:-0.395774365387;NFIX:-0.397219556222;ZNF143:-0.410961326583;PITX1..3:-0.413417807446;NFIL3:-0.442330225339;SOX5:-0.445384390662;FOXA2:-0.451297145371;NKX2-3_NKX2-5:-0.452390319604;HNF4A_NR2F1,2:-0.474125560621;OCT4_SOX2{dimer}:-0.499286941463;GATA4:-0.499731128278;PRRX1,2:-0.509709166886;MAZ:-0.51063979183;FOX{F1,F2,J1}:-0.520795638082;T:-0.523545446316;SPI1:-0.534853054037;ZFP161:-0.541358994451;EVI1:-0.548444221522;ADNP_IRX_SIX_ZHX:-0.548950836809;RREB1:-0.566849598594;PAX3,7:-0.573472969217;AHR_ARNT_ARNT2:-0.580985517003;NR1H4:-0.589189722246;DMAP1_NCOR{1,2}_SMARC:-0.593320250814;FOXM1:-0.605787002913;ELF1,2,4:-0.613124245241;SP1:-0.625535320243;PATZ1:-0.651071586837;CUX2:-0.652264525092;MED-1{core}:-0.678844000059;MZF1:-0.706784583977;PDX1:-0.714337928128;MYB:-0.734262163798;CDX1,2,4:-0.735670642117;EGR1..3:-0.740689839762;PRDM1:-0.758283772113;RORA:-0.768267460529;EP300:-0.784130835306;NRF1:-0.787635559024;ATF4:-0.794715232267;FOX{D1,D2}:-0.814091910169;IKZF2:-0.826108374;FOXO1,3,4:-0.828756151312;FOXN1:-0.85471022769;RFX2..5_RFXANK_RFXAP:-0.924059599892;ATF5_CREB3:-0.925920957517;IRF1,2:-0.944188732132;POU5F1:-0.981053511574;PAX4:-1.00466326411;ZNF384:-1.00938570399;CREB1:-1.01235419038;DBP:-1.01252345297;IRF7:-1.03856048311;GFI1:-1.1733606594;NFY{A,B,C}:-1.25296271887;E2F1..5:-1.27793247042;FOXP3:-1.31709973307;FOXP1:-1.39661550863;NKX6-1,2:-1.41215775573;SREBF1,2:-1.47447584857;BPTF:-1.50379103346;BREu{core}:-1.55101837718;TFDP1:-1.65302976465;RBPJ:-1.70801181629;FOXD3:-1.80847733231;NKX2-1,4:-1.91566474243;STAT1,3:-2.63105126998 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11363-117I4;search_select_hide=table117:FF:11363-117I4 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Smooth Muscle Cells - Coronary Artery, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11987 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11987
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11987
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.104 |
| 10 | 10 | 0.801 |
| 100 | 100 | 0.891 |
| 101 | 101 | 0.704 |
| 102 | 102 | 0.765 |
| 103 | 103 | 0.161 |
| 104 | 104 | 0.364 |
| 105 | 105 | 0.966 |
| 106 | 106 | 0.011 |
| 107 | 107 | 0.0524 |
| 108 | 108 | 0.304 |
| 109 | 109 | 0.0987 |
| 11 | 11 | 0.0452 |
| 110 | 110 | 0.305 |
| 111 | 111 | 0.878 |
| 112 | 112 | 0.259 |
| 113 | 113 | 0.225 |
| 114 | 114 | 0.0296 |
| 115 | 115 | 0.299 |
| 116 | 116 | 0.149 |
| 117 | 117 | 0.313 |
| 118 | 118 | 0.585 |
| 119 | 119 | 0.167 |
| 12 | 12 | 0.912 |
| 120 | 120 | 0.242 |
| 121 | 121 | 0.648 |
| 122 | 122 | 1 |
| 123 | 123 | 0.909 |
| 124 | 124 | 0.891 |
| 125 | 125 | 0.116 |
| 126 | 126 | 0.709 |
| 127 | 127 | 0.0459 |
| 128 | 128 | 0.0695 |
| 129 | 129 | 0.575 |
| 13 | 13 | 0.536 |
| 130 | 130 | 0.512 |
| 131 | 131 | 0.161 |
| 132 | 132 | 0.87 |
| 133 | 133 | 0.756 |
| 134 | 134 | 0.841 |
| 135 | 135 | 0.413 |
| 136 | 136 | 0.953 |
| 137 | 137 | 0.926 |
| 138 | 138 | 0.384 |
| 139 | 139 | 0.0126 |
| 14 | 14 | 0.873 |
| 140 | 140 | 0.69 |
| 141 | 141 | 0.35 |
| 142 | 142 | 0.708 |
| 143 | 143 | 0.00346 |
| 144 | 144 | 0.936 |
| 145 | 145 | 0.2 |
| 146 | 146 | 0.353 |
| 147 | 147 | 0.159 |
| 148 | 148 | 0.501 |
| 149 | 149 | 0.056 |
| 15 | 15 | 0.0912 |
| 150 | 150 | 0.341 |
| 151 | 151 | 0.288 |
| 152 | 152 | 0.0354 |
| 153 | 153 | 0.973 |
| 154 | 154 | 0.803 |
| 155 | 155 | 0.543 |
| 156 | 156 | 0.618 |
| 157 | 157 | 0.76 |
| 158 | 158 | 0.346 |
| 159 | 159 | 0.533 |
| 16 | 16 | 0.0904 |
| 160 | 160 | 0.0393 |
| 161 | 161 | 0.308 |
| 162 | 162 | 0.81 |
| 163 | 163 | 0.596 |
| 164 | 164 | 0.231 |
| 165 | 165 | 0.707 |
| 166 | 166 | 0.667 |
| 167 | 167 | 0.366 |
| 168 | 168 | 0.778 |
| 169 | 169 | 0.0226 |
| 17 | 17 | 0.22 |
| 18 | 18 | 0.0636 |
| 19 | 19 | 0.0863 |
| 2 | 2 | 0.534 |
| 20 | 20 | 0.621 |
| 21 | 21 | 0.475 |
| 22 | 22 | 0.211 |
| 23 | 23 | 0.106 |
| 24 | 24 | 0.433 |
| 25 | 25 | 0.885 |
| 26 | 26 | 0.0308 |
| 27 | 27 | 0.442 |
| 28 | 28 | 0.467 |
| 29 | 29 | 0.261 |
| 3 | 3 | 0.229 |
| 30 | 30 | 0.847 |
| 31 | 31 | 0.419 |
| 32 | 32 | 2.49955e-4 |
| 33 | 33 | 0.824 |
| 34 | 34 | 0.639 |
| 35 | 35 | 0.301 |
| 36 | 36 | 0.847 |
| 37 | 37 | 0.0537 |
| 38 | 38 | 0.485 |
| 39 | 39 | 0.33 |
| 4 | 4 | 0.453 |
| 40 | 40 | 0.377 |
| 41 | 41 | 0.668 |
| 42 | 42 | 0.434 |
| 43 | 43 | 0.194 |
| 44 | 44 | 0.118 |
| 45 | 45 | 0.514 |
| 46 | 46 | 0.0437 |
| 47 | 47 | 0.121 |
| 48 | 48 | 0.118 |
| 49 | 49 | 0.299 |
| 5 | 5 | 0.495 |
| 50 | 50 | 0.606 |
| 51 | 51 | 0.469 |
| 52 | 52 | 0.623 |
| 53 | 53 | 0.813 |
| 54 | 54 | 0.618 |
| 55 | 55 | 0.174 |
| 56 | 56 | 0.387 |
| 57 | 57 | 0.163 |
| 58 | 58 | 0.942 |
| 59 | 59 | 0.0356 |
| 6 | 6 | 0.764 |
| 60 | 60 | 0.302 |
| 61 | 61 | 0.831 |
| 62 | 62 | 0.432 |
| 63 | 63 | 0.0726 |
| 64 | 64 | 0.164 |
| 65 | 65 | 0.101 |
| 66 | 66 | 0.84 |
| 67 | 67 | 0.227 |
| 68 | 68 | 0.16 |
| 69 | 69 | 0.0325 |
| 7 | 7 | 0.756 |
| 70 | 70 | 0.00631 |
| 71 | 71 | 0.173 |
| 72 | 72 | 0.904 |
| 73 | 73 | 0.0212 |
| 74 | 74 | 0.385 |
| 75 | 75 | 0.331 |
| 76 | 76 | 0.972 |
| 77 | 77 | 0.0203 |
| 78 | 78 | 0.325 |
| 79 | 79 | 0.0471 |
| 8 | 8 | 0.0124 |
| 80 | 80 | 0.919 |
| 81 | 81 | 0.228 |
| 82 | 82 | 0.25 |
| 83 | 83 | 0.344 |
| 84 | 84 | 0.618 |
| 85 | 85 | 0.0288 |
| 86 | 86 | 0.559 |
| 87 | 87 | 0.0828 |
| 88 | 88 | 0.0715 |
| 89 | 89 | 0.0502 |
| 9 | 9 | 0.555 |
| 90 | 90 | 0.669 |
| 91 | 91 | 0.254 |
| 92 | 92 | 0.23 |
| 93 | 93 | 0.806 |
| 94 | 94 | 0.0935 |
| 95 | 95 | 0.225 |
| 96 | 96 | 0.513 |
| 97 | 97 | 0.442 |
| 98 | 98 | 0.17 |
| 99 | 99 | 0.0493 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11987
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
