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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000119,UBERON:0000383,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001558,UBERON:0002036,UBERON:0002050,UBERON:0002185,UBERON:0002204,UBERON:0002224,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004290,UBERON:0005178,UBERON:0005181,UBERON:0005291,UBERON:0005423,UBERON:0007023,UBERON:0007196,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005960
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002598
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005960
|accession_numbers=CAGE;DRX008478;DRR009350;DRZ000775;DRZ002160;DRZ012125;DRZ013510
|accession_numbers_RNASeq=sRNA-Seq;DRX037040;DRR041406;DRZ007048
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000167,FF:0000004,FF:0000179
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.51!325.50!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.85!69.86!HOXB5;;chr2:19558373..19558392,-!p1@OSR1!1.64!111.83!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.59!37.62!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.06!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.33!TBX2;;chr17:46675420..46675465,-!p3@HOXB6!1.48!33.52!HOXB6;;chr16:86544113..86544145,+!p1@FOXF1!1.47!34.80!FOXF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.46!137.67!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.46!46.32!CREB3L1;;chr6:34204921..34204939,+!p3@HMGA1!1.41!717.54!HMGA1;;chr12:66218255..66218304,+!p3@HMGA2!1.33!54.25!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.32!73.70!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!1.32!34.55!DRAP1;;chr17:46675539..46675551,-!p7@HOXB6!1.32!19.96!HOXB6;;chr17:59477275..59477286,+!p3@TBX2!1.25!22.26!TBX2;;chr11:65687362..65687436,+!p3@DRAP1!1.21!68.58!DRAP1;;chr17:59477197..59477212,+!p2@TBX2!1.21!25.85!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!1.21!22.77!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.17!20.47!NFIX;;chr17:46622070..46622109,-!p1@HOXB2!1.16!29.68!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.91!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.13!40.43!TWIST2;;chr17:59529743..59529798,+!p1@TBX4!1.12!12.28!TBX4;;chr11:65686732..65686756,+!p2@DRAP1!1.11!49.90!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!1.08!49.90!NR2F1;;chr2:239756739..239756755,+!p2@TWIST2!1.08!18.94!TWIST2;;chr17:46675469..46675481,-!p4@HOXB6!1.08!11.00!HOXB6;;chr5:72744594..72744609,-!p1@FOXD1!1.07!49.39!FOXD1;;chr17:46675586..46675600,-!p6@HOXB6!1.05!10.24!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!1.04!262.81!FOSL1;;chr6:34204672..34204692,+!p1@HMGA1!1.01!1055.58!HMGA1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!84.45!HMGA2;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.70!TBX5;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.59!FOXD1;;chr11:65687222..65687240,+!p7@DRAP1!0.96!10.49!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.95!37.11!TOX2;;chr6:34205372..34205412,+!p5@HMGA1!0.94!40.18!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.94!10.24!PRRX2;;chr12:115122318..115122331,-!p2@TBX3!0.94!7.68!TBX3;;chr12:66218598..66218645,+!p2@HMGA2!0.93!36.08!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.92!9.98!DRAP1;;chr17:46621101..46621143,-!p7@HOXB2!0.91!9.72!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.91!7.17!HOXB5;;chr11:65687158..65687216,+!p4@DRAP1!0.90!41.20!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!27.89!FOSL1;;chr17:46621937..46621966,-!p2@HOXB2!0.90!19.45!HOXB2;;chr5:134369905..134369972,-!p1@PITX1!0.90!11.00!PITX1;;chr2:5832508..5832524,+!p1@SOX11!0.90!6.91!SOX11;;chr16:86612320..86612394,+!p1@FOXL1!0.90!6.91!FOXL1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!18.94!TWIST1;;chr16:86600426..86600441,+!p1@FOXC2!0.88!17.15!FOXC2;;chr17:46667594..46667619,-!p1@HOXB3!0.88!6.65!HOXB3;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.65!HOXA7;;chr8:128748308..128748324,+!p2@MYC!0.87!188.08!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.73!SNAI2;;chr17:46667628..46667642,-!p2@HOXB3!0.87!6.40!HOXB3;;chr4:174451370..174451387,-!p1@HAND2!0.87!6.40!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!0.86!13.82!C11orf9;;chr11:47279248..47279264,+!p3@NR1H3!0.86!7.17!NR1H3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!16.12!TWIST1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.47!HOXB2;;chr11:65686952..65686975,+!p5@DRAP1!0.84!35.06!DRAP1;;chr12:66218904..66218913,+!p11@HMGA2!0.84!5.89!HMGA2;;chr11:46299186..46299195,+!p3@CREB3L1!0.82!6.40!CREB3L1;;chr11:46299443..46299459,+!p4@CREB3L1!0.82!5.63!CREB3L1;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.63!FOXC2;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.63!SIM2;;chr9:132427883..132427951,+!p2@PRRX2!0.82!5.63!PRRX2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.19!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.80!7.17!BCL3;;chr15:96876966..96877017,+!p12@NR2F2!0.79!7.68!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.79!5.12!ZNF668;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.12!HOXB2;;chr14:29235961..29236008,+!p1@FOXG1!0.77!4.86!FOXG1;;chr11:47279504..47279563,+!p1@NR1H3!0.76!11.52!NR1H3;;chr15:96874012..96874042,+!p2@NR2F2!0.75!45.55!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!0.75!13.31!HIC1;;chr20:42543506..42543549,+!p2@TOX2!0.75!12.03!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.75!6.91!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.65!HOXB7;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.61!TBX2;;chr4:174450089..174450153,-!p2@HAND2!0.75!4.61!HAND2;;chr12:54447599..54447630,+!p3@HOXC4!0.74!5.63!HOXC4;;chr19:13106214..13106382,+!p1@NFIX!0.73!114.13!NFIX;;chr17:46655672..46655697,-!p3@HOXB4!0.73!4.35!HOXB4;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.35!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.73!4.35!GATA4;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.43!TBX3;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.91!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.72!5.12!DRAP1;;chr17:46671154..46671167,-!p4@HOXB5!0.71!4.09!HOXB5;;chr17:46655730..46655791,-!p1@HOXB4!0.70!11.00!HOXB4;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.63!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.69!27.89!HIC1;;chr1:8483878..8483907,-!p4@RERE!0.68!16.63!RERE;;chr7:27183291..27183324,-!p1@HOXA5!0.68!3.84!HOXA5;;chr17:41623009..41623053,-!p4@ETV4!0.67!6.40!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.66!21.75!RARG;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.84!GLIS1;;chr3:150126759..150126784,+!p2@TSC22D2!0.65!18.42!TSC22D2;;chr2:46524537..46524553,+!p1@EPAS1!0.64!393.06!EPAS1;;chr11:65686855..65686946,+!p1@DRAP1!0.64!300.94!DRAP1;;chr6:34204973..34204990,+!p4@HMGA1!0.64!53.23!HMGA1;;chr18:19749386..19749404,+!p2@GATA6!0.64!5.12!GATA6;;chr17:46675619..46675642,-!p5@HOXB6!0.64!3.33!HOXB6;;chr11:65668011..65668020,-!p3@FOSL1!0.64!3.33!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.64!3.33!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.63!279.70!TAX1BP3;;chr19:3366570..3366619,+!p1@NFIC!0.63!123.34!NFIC;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.15!NR2F2;;chr15:96874145..96874166,+!p7@NR2F2!0.63!6.91!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.63!6.40!ZFP106;;chr3:141105705..141105770,+!p4@ZBTB38!0.63!4.09!ZBTB38;;chr20:39946361..39946379,-!p2@ZHX3!0.62!10.75!ZHX3;;chr7:150946015..150946070,-!p3@SMARCD3!0.62!7.68!SMARCD3;;chr5:72743793..72743855,-!p4@FOXD1!0.62!3.84!FOXD1;;chr8:49833978..49833996,-!p1@SNAI2!0.61!76.26!SNAI2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.61!41.20!TAX1BP3;;chrX:48900782..48900793,-!p3@TFE3!0.61!6.40!TFE3;;chr17:46675344..46675355,-!p9@HOXB6!0.61!3.07!HOXB6;;chr17:59477266..59477273,+!p6@TBX2!0.61!3.07!TBX2;;chr12:54447637..54447659,+!p4@HOXC4!0.61!3.07!HOXC4;;chr6:1389824..1389840,+!p3@FOXF2!0.61!3.07!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.61!3.07!CUX1;;chr2:19558327..19558334,-!p2@OSR1!0.61!3.07!OSR1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.19!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.86!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.60!3.84!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.59!242.85!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.59!46.57!CREB3;;chr15:96869255..96869291,+!p6@NR2F2!0.59!5.89!NR2F2;;chr19:38720294..38720348,-!p1@DPF1!0.59!3.84!DPF1;;chr1:170632285..170632309,+!p1@PRRX1!0.59!3.33!PRRX1;;chr19:3359591..3359667,+!p2@NFIC!0.58!39.41!NFIC;;chr20:42295713..42295738,+!p2@MYBL2!0.58!19.96!MYBL2;;chr1:221052700..221052730,+!p5@HLX!0.58!4.61!HLX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.81!ARNT2;;chr2:96012397..96012417,+!p3@KCNIP3!0.58!2.81!KCNIP3;;chr4:57522598..57522664,-!p3@HOPX!0.58!2.81!HOPX;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.81!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.58!2.81!IRX2;;chr20:42295745..42295765,+!p1@MYBL2!0.57!55.02!MYBL2;;chr7:28448965..28448994,+!p2@CREB5!0.57!11.52!CREB5;;chr14:21994337..21994442,-!p1@SALL2!0.57!8.70!SALL2;;chr12:66218183..66218209,+!p4@HMGA2!0.57!5.89!HMGA2;;chr19:13134457..13134462,+!p5@NFIX!0.57!5.37!NFIX;;chr5:92918956..92918969,+!p4@NR2F1!0.57!3.07!NR2F1;;chr20:306489..306564,+!p1@SOX12!0.56!35.83!SOX12;;chr19:18392250..18392260,-!p4@JUND!0.56!9.98!JUND;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.58!HMGA2;;chr12:115122005..115122016,-!p3@TBX3!0.56!3.33!TBX3;;chr15:96873861..96873872,+!p9@NR2F2!0.55!6.14!NR2F2;;chr16:8962202..8962222,-!p3@CARHSP1!0.55!5.12!CARHSP1;;chr9:16870659..16870675,-!p2@BNC2!0.55!3.33!BNC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.55!2.56!PKNOX2;;chr12:115122262..115122271,-!p7@TBX3!0.55!2.56!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.55!2.56!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.55!2.56!PITX1;;chr15:96869165..96869183,+!p20@NR2F2!0.55!2.56!NR2F2;;chr17:41622731..41622764,-!p5@ETV4!0.55!2.56!ETV4;;chr15:96873921..96873946,+!p1@NR2F2!0.54!88.54!NR2F2;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.01!PCBP4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.54!31.22!GLIS2;;chr19:49865646..49865718,-!p1@TEAD2!0.54!26.61!TEAD2;;chr21:47063625..47063658,+!p1@PCBP3!0.54!13.31!PCBP3;;chr6:35310395..35310410,+!p2@PPARD!0.54!11.77!PPARD;;chr17:61919985..61920012,-!p3@SMARCD2!0.54!7.17!SMARCD2;;chr20:50721803..50721857,-!p2@ZFP64!0.54!4.35!ZFP64;;chr2:28616337..28616355,+!p2@FOSL2!0.53!53.99!FOSL2;;chr16:4322832..4322907,-!p1@TFAP4!0.53!22.77!TFAP4;;chr17:17726907..17726958,-!p2@SREBF1!0.53!18.42!SREBF1;;chr19:49864746..49864780,-!p2@TEAD2!0.53!3.58!TEAD2;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.38!CREB3;;chr12:57504975..57505019,-!p2@STAT6!0.52!11.77!STAT6;;chr14:73360799..73360817,-!p1@DPF3!0.52!9.98!DPF3;;chr12:115121802..115121814,-!p5@TBX3!0.52!2.30!TBX3;;chr14:29234581..29234601,+!p2@FOXG1!0.52!2.30!FOXG1;;chr19:46800289..46800327,+!p2@HIF3A!0.52!2.30!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.52!2.30!HOXA2;;chr7:27169801..27169844,-!p2@HOXA4!0.52!2.30!HOXA4;;chr6:31126291..31126399,+!p1@TCF19!0.51!27.64!TCF19;;chr11:113930291..113930339,+!p2@ZBTB16!0.51!4.09!ZBTB16;;chr16:8962853..8962878,-!p1@CARHSP1!0.50!168.12!CARHSP1;;chr6:35464817..35464894,-!p1@TEAD3!0.50!44.01!TEAD3;;chr18:19749541..19749557,+!p1@GATA6!0.50!8.44!GATA6;;chr17:7492684..7492778,-!p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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
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Line 34: Line 44:
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor1.CNhs11328.11512-119G9.hg38.nobarcode.ctss.bed.gz
|id=FF:11512-119G9
|id=FF:11512-119G9
|is_a=EFO:0002091;;FF:0000002;;FF:0000179;;FF:0000210;;FF:0000998
|is_a=EFO:0002091;;FF:0000179;;FF:0000998
|is_obsolete=
|library_id=CNhs11328
|library_id_phase_based=2:CNhs11328
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11512
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TAGCTT.11512
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11512
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TAGCTT.11512
|name=Smooth Muscle Cells - Bronchial, donor1
|name=Smooth Muscle Cells - Bronchial, donor1
|namespace=
|namespace=
Line 41: Line 65:
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|profile_hcage=CNhs11328,LSID768,release014,COMPLETED
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|rna_box=119
|rna_box=119
|rna_catalog_number=SC3405
|rna_catalog_number=SC3405
Line 55: Line 82:
|rna_tube_id=119G9
|rna_tube_id=119G9
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.TAGCTT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.85863478702461e-217!GO:0005737;cytoplasm;2.16386631397125e-178!GO:0043231;intracellular membrane-bound organelle;5.2046583163741e-159!GO:0043227;membrane-bound organelle;1.38863386119613e-158!GO:0043226;organelle;3.61698191834536e-155!GO:0043229;intracellular organelle;4.85506197048986e-155!GO:0044444;cytoplasmic part;2.29279502413612e-137!GO:0044422;organelle part;1.0805172840728e-119!GO:0044446;intracellular organelle part;1.05082304173219e-118!GO:0005739;mitochondrion;3.09681806035676e-76!GO:0032991;macromolecular complex;4.46674568164871e-74!GO:0030529;ribonucleoprotein complex;2.78516941138813e-72!GO:0044237;cellular metabolic process;1.24856875847696e-70!GO:0044238;primary metabolic process;2.16234395372639e-70!GO:0005515;protein binding;1.35847581193996e-63!GO:0043170;macromolecule metabolic process;5.1644694467442e-59!GO:0043233;organelle lumen;7.73962485828058e-59!GO:0031974;membrane-enclosed lumen;7.73962485828058e-59!GO:0005840;ribosome;1.79291273539026e-51!GO:0044429;mitochondrial part;1.05639094032973e-50!GO:0031090;organelle membrane;2.32809157106976e-50!GO:0044428;nuclear part;7.9244093119179e-49!GO:0005634;nucleus;7.41968208715576e-48!GO:0003735;structural constituent of ribosome;9.83178531764754e-47!GO:0003723;RNA binding;4.09070827498668e-46!GO:0009058;biosynthetic process;2.81486115462507e-43!GO:0006412;translation;3.76842905195532e-42!GO:0019538;protein metabolic process;1.39050986889749e-40!GO:0033279;ribosomal subunit;7.93653866114676e-40!GO:0031967;organelle envelope;1.18227107216909e-39!GO:0031975;envelope;2.12478458100526e-39!GO:0044249;cellular biosynthetic process;6.30714616687804e-39!GO:0016043;cellular component organization and biogenesis;1.14181861101674e-38!GO:0044260;cellular macromolecule metabolic process;1.31566755086722e-36!GO:0043234;protein complex;1.82762562728675e-35!GO:0009059;macromolecule biosynthetic process;2.25157167244591e-35!GO:0044267;cellular protein metabolic process;2.3259860294314e-35!GO:0005829;cytosol;3.02348867732565e-35!GO:0005740;mitochondrial envelope;1.36240541992035e-34!GO:0015031;protein transport;2.04728071633578e-33!GO:0006396;RNA processing;2.04728071633578e-33!GO:0031966;mitochondrial membrane;2.25223846307727e-32!GO:0033036;macromolecule localization;5.76426562874501e-32!GO:0031981;nuclear lumen;7.21657500933117e-31!GO:0045184;establishment of protein localization;1.44737827408683e-30!GO:0019866;organelle inner membrane;1.58574383671504e-30!GO:0008104;protein localization;2.68234009865024e-30!GO:0005743;mitochondrial inner membrane;1.11903290665183e-29!GO:0043283;biopolymer metabolic process;8.95641157893655e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.70368344443655e-28!GO:0006996;organelle organization and biogenesis;6.15549632148161e-27!GO:0010467;gene expression;4.45557353084542e-26!GO:0046907;intracellular transport;1.15520330837261e-25!GO:0065003;macromolecular complex assembly;2.20402863232447e-24!GO:0016071;mRNA metabolic process;2.4561232270144e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.95556593121276e-24!GO:0043228;non-membrane-bound organelle;3.82149174290938e-23!GO:0043232;intracellular non-membrane-bound organelle;3.82149174290938e-23!GO:0044445;cytosolic part;6.64004870337253e-23!GO:0006886;intracellular protein transport;1.13782935519913e-22!GO:0008380;RNA splicing;4.07492517453154e-22!GO:0022607;cellular component assembly;7.50770136052214e-22!GO:0015934;large ribosomal subunit;2.48842930949021e-21!GO:0044455;mitochondrial membrane part;7.68977222643195e-21!GO:0006119;oxidative phosphorylation;1.0867687321454e-20!GO:0006397;mRNA processing;1.10848780677545e-20!GO:0005783;endoplasmic reticulum;2.4189656309831e-20!GO:0006259;DNA metabolic process;4.30483718177791e-20!GO:0031980;mitochondrial lumen;7.54079858658406e-20!GO:0005759;mitochondrial matrix;7.54079858658406e-20!GO:0015935;small ribosomal subunit;1.37779285496108e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.82095736635756e-19!GO:0005654;nucleoplasm;2.0954642787996e-17!GO:0005746;mitochondrial respiratory chain;2.72117312969787e-17!GO:0012505;endomembrane system;2.86628657181572e-17!GO:0044432;endoplasmic reticulum part;3.66039874917262e-17!GO:0006457;protein folding;6.40148681042357e-17!GO:0048770;pigment granule;1.53455789998876e-16!GO:0042470;melanosome;1.53455789998876e-16!GO:0005681;spliceosome;2.26675338011709e-16!GO:0051186;cofactor metabolic process;5.01379646783738e-16!GO:0051649;establishment of cellular localization;1.43957869117453e-15!GO:0051641;cellular localization;2.56291240221532e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.70465165036169e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.71945701774066e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.71945701774066e-15!GO:0003954;NADH dehydrogenase activity;4.71945701774066e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.71945701774066e-15!GO:0005761;mitochondrial ribosome;5.7178696007875e-15!GO:0000313;organellar ribosome;5.7178696007875e-15!GO:0007049;cell cycle;5.7178696007875e-15!GO:0044451;nucleoplasm part;7.95441494877763e-15!GO:0005730;nucleolus;9.00691446569425e-15!GO:0008134;transcription factor binding;4.93710016256365e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17574940083464e-13!GO:0016874;ligase activity;1.21436961068216e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.21436961068216e-13!GO:0042773;ATP synthesis coupled electron transport;1.21436961068216e-13!GO:0005794;Golgi apparatus;2.63438612463399e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.05581537635156e-13!GO:0045271;respiratory chain complex I;3.05581537635156e-13!GO:0005747;mitochondrial respiratory chain complex I;3.05581537635156e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.00815523194438e-12!GO:0006512;ubiquitin cycle;1.62430019041087e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.91158414321585e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.79946019153565e-12!GO:0000166;nucleotide binding;3.04078858479693e-12!GO:0005789;endoplasmic reticulum membrane;3.51468615445263e-12!GO:0016462;pyrophosphatase activity;3.77298052166256e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.90659689756837e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;4.34072308439622e-12!GO:0009055;electron carrier activity;4.50976369140693e-12!GO:0022402;cell cycle process;5.05639644607805e-12!GO:0051082;unfolded protein binding;7.41817045714073e-12!GO:0012501;programmed cell death;7.70706859858448e-12!GO:0000502;proteasome complex (sensu Eukaryota);9.08010197483897e-12!GO:0006732;coenzyme metabolic process;9.69956092570812e-12!GO:0017111;nucleoside-triphosphatase activity;1.35600443347526e-11!GO:0006915;apoptosis;1.36254794554129e-11!GO:0044265;cellular macromolecule catabolic process;1.6475917942852e-11!GO:0000278;mitotic cell cycle;2.1482886238326e-11!GO:0044248;cellular catabolic process;2.59197745098796e-11!GO:0006605;protein targeting;2.60544423562566e-11!GO:0043285;biopolymer catabolic process;3.70106384915852e-11!GO:0043412;biopolymer modification;5.46479895136859e-11!GO:0008219;cell death;1.68145976204929e-10!GO:0016265;death;1.68145976204929e-10!GO:0009057;macromolecule catabolic process;2.07386531278064e-10!GO:0022618;protein-RNA complex assembly;2.41892155228101e-10!GO:0048193;Golgi vesicle transport;3.97115786082305e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;4.43126817918916e-10!GO:0005793;ER-Golgi intermediate compartment;5.23637418742831e-10!GO:0019941;modification-dependent protein catabolic process;5.55062982826164e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.55062982826164e-10!GO:0006464;protein modification process;6.88180640976826e-10!GO:0044257;cellular protein catabolic process;7.27193769393156e-10!GO:0006511;ubiquitin-dependent protein catabolic process;9.06658405859428e-10!GO:0016491;oxidoreductase activity;1.19999340760597e-09!GO:0003712;transcription cofactor activity;1.4054734838416e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.46145870111833e-09!GO:0008135;translation factor activity, nucleic acid binding;1.65421913980541e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.96493989830492e-09!GO:0000375;RNA splicing, via transesterification reactions;1.96493989830492e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.96493989830492e-09!GO:0003676;nucleic acid binding;2.1573938331393e-09!GO:0042254;ribosome biogenesis and assembly;2.74447554728649e-09!GO:0006163;purine nucleotide metabolic process;4.62652243814259e-09!GO:0006974;response to DNA damage stimulus;4.88297197903956e-09!GO:0030163;protein catabolic process;4.88297197903956e-09!GO:0051276;chromosome organization and biogenesis;5.1890097154206e-09!GO:0006323;DNA packaging;5.89833198626283e-09!GO:0016192;vesicle-mediated transport;5.89833198626283e-09!GO:0009259;ribonucleotide metabolic process;6.58181263719741e-09!GO:0009150;purine ribonucleotide metabolic process;6.81344998937692e-09!GO:0006399;tRNA metabolic process;8.4575766118304e-09!GO:0051188;cofactor biosynthetic process;1.14327932839351e-08!GO:0048523;negative regulation of cellular process;1.22132908384734e-08!GO:0007005;mitochondrion organization and biogenesis;1.51583629362155e-08!GO:0032553;ribonucleotide binding;1.85602887144897e-08!GO:0032555;purine ribonucleotide binding;1.85602887144897e-08!GO:0042981;regulation of apoptosis;1.85602887144897e-08!GO:0043067;regulation of programmed cell death;2.3282134143326e-08!GO:0051726;regulation of cell cycle;2.33255265213964e-08!GO:0006164;purine nucleotide biosynthetic process;2.48069843438734e-08!GO:0017076;purine nucleotide binding;2.81573592647125e-08!GO:0000074;regulation of progression through cell cycle;2.82085130144132e-08!GO:0016070;RNA metabolic process;2.92717839939054e-08!GO:0044427;chromosomal part;3.11830361034069e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.18178434097018e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.61207397614131e-08!GO:0005694;chromosome;4.12828298535471e-08!GO:0043687;post-translational protein modification;4.34560865872135e-08!GO:0009260;ribonucleotide biosynthetic process;4.65357426873888e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.74889243163927e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.11278197905758e-08!GO:0005768;endosome;7.02253625167841e-08!GO:0009141;nucleoside triphosphate metabolic process;7.40361291850033e-08!GO:0065004;protein-DNA complex assembly;7.72054766432959e-08!GO:0016740;transferase activity;7.72054766432959e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.22990578986147e-08!GO:0022403;cell cycle phase;9.46400753172659e-08!GO:0006461;protein complex assembly;9.80865947252644e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.01546431004465e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.01546431004465e-07!GO:0006333;chromatin assembly or disassembly;1.13514565009919e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.41482194264863e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.63819122080901e-07!GO:0009719;response to endogenous stimulus;1.67264757160053e-07!GO:0048519;negative regulation of biological process;2.434936151024e-07!GO:0000785;chromatin;2.46457024037569e-07!GO:0005635;nuclear envelope;2.67679785358919e-07!GO:0031497;chromatin assembly;2.75020149659763e-07!GO:0008639;small protein conjugating enzyme activity;3.08838105968021e-07!GO:0006334;nucleosome assembly;3.19475099865793e-07!GO:0006281;DNA repair;3.26034797952387e-07!GO:0007067;mitosis;3.57748392072807e-07!GO:0000087;M phase of mitotic cell cycle;3.70049153169399e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.02838377152734e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.02838377152734e-07!GO:0006091;generation of precursor metabolites and energy;5.04712505829775e-07!GO:0004842;ubiquitin-protein ligase activity;6.37005988960417e-07!GO:0006913;nucleocytoplasmic transport;6.58276301848389e-07!GO:0005788;endoplasmic reticulum lumen;6.71946153148223e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.03871375774776e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.21890744657061e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.21890744657061e-07!GO:0015986;ATP synthesis coupled proton transport;7.5758782250174e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.5758782250174e-07!GO:0003743;translation initiation factor activity;7.5758782250174e-07!GO:0009060;aerobic respiration;7.5758782250174e-07!GO:0019787;small conjugating protein ligase activity;8.15512780055424e-07!GO:0005524;ATP binding;8.62515768354453e-07!GO:0032559;adenyl ribonucleotide binding;9.64690555397571e-07!GO:0031965;nuclear membrane;1.02761134488518e-06!GO:0006260;DNA replication;1.0989554362859e-06!GO:0046034;ATP metabolic process;1.0989554362859e-06!GO:0017038;protein import;1.11876549426526e-06!GO:0051169;nuclear transport;1.22344545509282e-06!GO:0009056;catabolic process;1.28103434778789e-06!GO:0006364;rRNA processing;1.37957833043491e-06!GO:0009117;nucleotide metabolic process;1.42135838408666e-06!GO:0045333;cellular respiration;1.43315062046494e-06!GO:0008565;protein transporter activity;1.50394877841937e-06!GO:0030554;adenyl nucleotide binding;1.75903332561894e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.82543798747488e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.82543798747488e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.82543798747488e-06!GO:0008654;phospholipid biosynthetic process;2.26205178452128e-06!GO:0006366;transcription from RNA polymerase II promoter;2.27573062650863e-06!GO:0006916;anti-apoptosis;2.37338115501419e-06!GO:0065002;intracellular protein transport across a membrane;2.51757970043942e-06!GO:0016072;rRNA metabolic process;2.60506494978769e-06!GO:0016881;acid-amino acid ligase activity;2.68608772404276e-06!GO:0045259;proton-transporting ATP synthase complex;2.73713639693653e-06!GO:0016604;nuclear body;2.73905222279181e-06!GO:0005773;vacuole;2.88574019922284e-06!GO:0030120;vesicle coat;2.96793051024517e-06!GO:0030662;coated vesicle membrane;2.96793051024517e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.08812307319579e-06!GO:0009108;coenzyme biosynthetic process;3.28318153883908e-06!GO:0043069;negative regulation of programmed cell death;3.36380073320556e-06!GO:0016564;transcription repressor activity;3.43463735495364e-06!GO:0006413;translational initiation;3.56338865721911e-06!GO:0043066;negative regulation of apoptosis;4.00313904187326e-06!GO:0003714;transcription corepressor activity;4.29237513133366e-06!GO:0003924;GTPase activity;4.29299160482661e-06!GO:0005762;mitochondrial large ribosomal subunit;4.5148381883146e-06!GO:0000315;organellar large ribosomal subunit;4.5148381883146e-06!GO:0044431;Golgi apparatus part;4.69067133870193e-06!GO:0006446;regulation of translational initiation;5.0044917196582e-06!GO:0043038;amino acid activation;5.0044917196582e-06!GO:0006418;tRNA aminoacylation for protein translation;5.0044917196582e-06!GO:0043039;tRNA aminoacylation;5.0044917196582e-06!GO:0048475;coated membrane;5.7565581833714e-06!GO:0030117;membrane coat;5.7565581833714e-06!GO:0031988;membrane-bound vesicle;5.92360562589808e-06!GO:0016853;isomerase activity;6.67704393736101e-06!GO:0006754;ATP biosynthetic process;7.15764906104453e-06!GO:0006753;nucleoside phosphate metabolic process;7.15764906104453e-06!GO:0019829;cation-transporting ATPase activity;7.19683025057305e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.82730414830585e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.82730414830585e-06!GO:0051329;interphase of mitotic cell cycle;8.47967001769438e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.07431344668705e-06!GO:0044440;endosomal part;9.94681972223211e-06!GO:0010008;endosome membrane;9.94681972223211e-06!GO:0044453;nuclear membrane part;1.02545547614826e-05!GO:0051301;cell division;1.02545547614826e-05!GO:0016779;nucleotidyltransferase activity;1.24047658013055e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.27276214237122e-05!GO:0008610;lipid biosynthetic process;1.34515270999314e-05!GO:0005905;coated pit;1.38415123956531e-05!GO:0016049;cell growth;1.6122555730128e-05!GO:0031324;negative regulation of cellular metabolic process;1.7555707425313e-05!GO:0008361;regulation of cell size;1.81540348847488e-05!GO:0051246;regulation of protein metabolic process;1.85206782454994e-05!GO:0005667;transcription factor complex;2.24803179988588e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.32922160647632e-05!GO:0051325;interphase;2.47444087916032e-05!GO:0006099;tricarboxylic acid cycle;2.63144753017932e-05!GO:0046356;acetyl-CoA catabolic process;2.63144753017932e-05!GO:0005770;late endosome;2.77704017880915e-05!GO:0000323;lytic vacuole;2.84222224849631e-05!GO:0005764;lysosome;2.84222224849631e-05!GO:0016563;transcription activator activity;2.98488838911082e-05!GO:0006084;acetyl-CoA metabolic process;3.41232618595629e-05!GO:0050794;regulation of cellular process;3.4874831718195e-05!GO:0003899;DNA-directed RNA polymerase activity;3.4874831718195e-05!GO:0051187;cofactor catabolic process;3.52090564053523e-05!GO:0045454;cell redox homeostasis;3.60007888896012e-05!GO:0042623;ATPase activity, coupled;4.02569468591022e-05!GO:0000279;M phase;4.39906658160985e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.44386263566779e-05!GO:0016568;chromatin modification;4.78885681160552e-05!GO:0046474;glycerophospholipid biosynthetic process;5.14618913293334e-05!GO:0003697;single-stranded DNA binding;5.14618913293334e-05!GO:0006752;group transfer coenzyme metabolic process;5.18963984375327e-05!GO:0031252;leading edge;5.54401096887559e-05!GO:0004298;threonine endopeptidase activity;6.06414568290749e-05!GO:0031410;cytoplasmic vesicle;6.42689074142116e-05!GO:0000314;organellar small ribosomal subunit;7.50301550383394e-05!GO:0005763;mitochondrial small ribosomal subunit;7.50301550383394e-05!GO:0009109;coenzyme catabolic process;7.99731806488375e-05!GO:0045786;negative regulation of progression through cell cycle;7.99874355382038e-05!GO:0016126;sterol biosynthetic process;7.99874355382038e-05!GO:0005791;rough endoplasmic reticulum;8.0093451596623e-05!GO:0031982;vesicle;8.13335662797625e-05!GO:0044262;cellular carbohydrate metabolic process;8.31254786244587e-05!GO:0001558;regulation of cell growth;8.61845806266014e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.61845806266014e-05!GO:0043623;cellular protein complex assembly;9.48020377068281e-05!GO:0015630;microtubule cytoskeleton;9.55311264490066e-05!GO:0032446;protein modification by small protein conjugation;0.000108720451654753!GO:0016887;ATPase activity;0.000126287596391398!GO:0016859;cis-trans isomerase activity;0.00013079763476187!GO:0016567;protein ubiquitination;0.000133533498791938!GO:0048522;positive regulation of cellular process;0.000135165498487265!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000136190674897172!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000137829962046271!GO:0000139;Golgi membrane;0.000143468080055516!GO:0030133;transport vesicle;0.000146686560201992!GO:0003713;transcription coactivator activity;0.000154463740959117!GO:0006793;phosphorus metabolic process;0.000169091974385117!GO:0006796;phosphate metabolic process;0.000169091974385117!GO:0051427;hormone receptor binding;0.000181172856677721!GO:0033116;ER-Golgi intermediate compartment membrane;0.000188672261266086!GO:0005643;nuclear pore;0.000194246643547252!GO:0016607;nuclear speck;0.000194246643547252!GO:0030176;integral to endoplasmic reticulum membrane;0.000194246643547252!GO:0030867;rough endoplasmic reticulum membrane;0.000203229471879778!GO:0009892;negative regulation of metabolic process;0.000205647363913265!GO:0019899;enzyme binding;0.000219843826410106!GO:0000245;spliceosome assembly;0.000232902117792142!GO:0006626;protein targeting to mitochondrion;0.000243556934216085!GO:0016310;phosphorylation;0.0002707095917955!GO:0000786;nucleosome;0.000275844641303319!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000279785125268934!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000279858243500057!GO:0031968;organelle outer membrane;0.000281457450241921!GO:0043284;biopolymer biosynthetic process;0.000285931741686265!GO:0016787;hydrolase activity;0.000313545438786349!GO:0019867;outer membrane;0.000327750848367818!GO:0035257;nuclear hormone receptor binding;0.000329182012586063!GO:0046930;pore complex;0.000373408142728486!GO:0043681;protein import into mitochondrion;0.000376972478896171!GO:0005525;GTP binding;0.000376972478896171!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0003916924665026!GO:0005798;Golgi-associated vesicle;0.00040039714346397!GO:0051789;response to protein stimulus;0.00041153905473263!GO:0006986;response to unfolded protein;0.00041153905473263!GO:0065009;regulation of a molecular function;0.00044638708378205!GO:0007006;mitochondrial membrane organization and biogenesis;0.000484364673035761!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000487178358863398!GO:0005741;mitochondrial outer membrane;0.000493350742872136!GO:0005048;signal sequence binding;0.000495764433969965!GO:0046467;membrane lipid biosynthetic process;0.000498020316814548!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000501379434664859!GO:0050789;regulation of biological process;0.000527744219500071!GO:0016481;negative regulation of transcription;0.000581828403464239!GO:0006839;mitochondrial transport;0.00059801208986775!GO:0008033;tRNA processing;0.000612909765508321!GO:0005769;early endosome;0.000643200822317497!GO:0051170;nuclear import;0.000667968056094029!GO:0019843;rRNA binding;0.000761438353638786!GO:0008250;oligosaccharyl transferase complex;0.00091967352315907!GO:0006606;protein import into nucleus;0.00101630427005313!GO:0043566;structure-specific DNA binding;0.0010797147465844!GO:0009165;nucleotide biosynthetic process;0.0010797147465844!GO:0030036;actin cytoskeleton organization and biogenesis;0.00109740271554918!GO:0006979;response to oxidative stress;0.00111680551493456!GO:0006695;cholesterol biosynthetic process;0.00115859767667301!GO:0000151;ubiquitin ligase complex;0.00117401251909856!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00121559573085316!GO:0008632;apoptotic program;0.00122651367642456!GO:0006082;organic acid metabolic process;0.00134767632160791!GO:0030132;clathrin coat of coated pit;0.00137252459259165!GO:0051920;peroxiredoxin activity;0.00150233048000559!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00151857178532641!GO:0030880;RNA polymerase complex;0.00152909042207456!GO:0019752;carboxylic acid metabolic process;0.00155260959044993!GO:0006414;translational elongation;0.00157009462704922!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00157009462704922!GO:0015002;heme-copper terminal oxidase activity;0.00157009462704922!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00157009462704922!GO:0004129;cytochrome-c oxidase activity;0.00157009462704922!GO:0046489;phosphoinositide biosynthetic process;0.00158884662114887!GO:0006613;cotranslational protein targeting to membrane;0.0016425133345154!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00164305777700058!GO:0031902;late endosome membrane;0.00170300324345355!GO:0006778;porphyrin metabolic process;0.00174034872937153!GO:0033013;tetrapyrrole metabolic process;0.00174034872937153!GO:0007243;protein kinase cascade;0.00175063579048828!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00181380256823124!GO:0040008;regulation of growth;0.00181409890553121!GO:0018196;peptidyl-asparagine modification;0.00196961412973197!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00196961412973197!GO:0006650;glycerophospholipid metabolic process;0.00210712434751041!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00212512698801055!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00216789497463094!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00216789497463094!GO:0032561;guanyl ribonucleotide binding;0.00217836723803891!GO:0019001;guanyl nucleotide binding;0.00217836723803891!GO:0030118;clathrin coat;0.00218732340816061!GO:0046483;heterocycle metabolic process;0.00228043334049369!GO:0005774;vacuolar membrane;0.00228154065120104!GO:0043488;regulation of mRNA stability;0.0023314879282081!GO:0043487;regulation of RNA stability;0.0023314879282081!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00237016113581924!GO:0016044;membrane organization and biogenesis;0.00273935631694514!GO:0042802;identical protein binding;0.00284415033753487!GO:0008026;ATP-dependent helicase activity;0.00288980615974491!GO:0005885;Arp2/3 protein complex;0.00290176834485329!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00303509220377885!GO:0005819;spindle;0.00309428971569951!GO:0051348;negative regulation of transferase activity;0.0033406655246202!GO:0033673;negative regulation of kinase activity;0.00334662736836013!GO:0006469;negative regulation of protein kinase activity;0.00334662736836013!GO:0045941;positive regulation of transcription;0.00343236888131944!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00358461082856371!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00358461082856371!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00358461082856371!GO:0048468;cell development;0.00364878182403094!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00366958438635216!GO:0000428;DNA-directed RNA polymerase complex;0.00366958438635216!GO:0008637;apoptotic mitochondrial changes;0.00373965084538834!GO:0048518;positive regulation of biological process;0.00374547218151342!GO:0007010;cytoskeleton organization and biogenesis;0.00377574717606737!GO:0005813;centrosome;0.00377916668148168!GO:0006779;porphyrin biosynthetic process;0.00396026064515327!GO:0033014;tetrapyrrole biosynthetic process;0.00396026064515327!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00398837047712011!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00420737225258904!GO:0043021;ribonucleoprotein binding;0.00425019654240465!GO:0007264;small GTPase mediated signal transduction;0.00454484697336239!GO:0005684;U2-dependent spliceosome;0.00468955154301052!GO:0016125;sterol metabolic process;0.0048069668508591!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00495108925080217!GO:0050657;nucleic acid transport;0.00498223651055103!GO:0051236;establishment of RNA localization;0.00498223651055103!GO:0050658;RNA transport;0.00498223651055103!GO:0004386;helicase activity;0.00498223651055103!GO:0042168;heme metabolic process;0.00498257064832223!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00498257064832223!GO:0015399;primary active transmembrane transporter activity;0.00498257064832223!GO:0006520;amino acid metabolic process;0.00504992217340801!GO:0006595;polyamine metabolic process;0.00504992217340801!GO:0008286;insulin receptor signaling pathway;0.00507592933903033!GO:0006403;RNA localization;0.00507991928029568!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00509901345141717!GO:0007040;lysosome organization and biogenesis;0.00539062237073351!GO:0030029;actin filament-based process;0.00551974324478826!GO:0006118;electron transport;0.00576531885368114!GO:0031072;heat shock protein binding;0.00580502395905244!GO:0015992;proton transport;0.00581759384838287!GO:0005815;microtubule organizing center;0.00581759384838287!GO:0044437;vacuolar part;0.00616994273092458!GO:0005765;lysosomal membrane;0.00624954474765649!GO:0006818;hydrogen transport;0.00635091770610211!GO:0043065;positive regulation of apoptosis;0.00644772806933485!GO:0044452;nucleolar part;0.00647649747345138!GO:0017166;vinculin binding;0.00693829353262461!GO:0007033;vacuole organization and biogenesis;0.00695983241924846!GO:0030658;transport vesicle membrane;0.00707398978287248!GO:0045893;positive regulation of transcription, DNA-dependent;0.00712250120197536!GO:0016860;intramolecular oxidoreductase activity;0.00727896415167295!GO:0022890;inorganic cation transmembrane transporter activity;0.00738914928612355!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00749285853520608!GO:0042158;lipoprotein biosynthetic process;0.0075113349701119!GO:0043068;positive regulation of programmed cell death;0.0075113349701119!GO:0004576;oligosaccharyl transferase activity;0.00808253701511022!GO:0030125;clathrin vesicle coat;0.00830487845854439!GO:0030665;clathrin coated vesicle membrane;0.00830487845854439!GO:0006643;membrane lipid metabolic process;0.00831146180488168!GO:0030119;AP-type membrane coat adaptor complex;0.00842312575920527!GO:0006740;NADPH regeneration;0.00853352220680268!GO:0006098;pentose-phosphate shunt;0.00853352220680268!GO:0006509;membrane protein ectodomain proteolysis;0.00855160555314813!GO:0033619;membrane protein proteolysis;0.00855160555314813!GO:0003684;damaged DNA binding;0.00859462793520823!GO:0048487;beta-tubulin binding;0.00887989463578284!GO:0006497;protein amino acid lipidation;0.00917858798457023!GO:0050790;regulation of catalytic activity;0.00935839452474066!GO:0045792;negative regulation of cell size;0.00979222773818871!GO:0045892;negative regulation of transcription, DNA-dependent;0.00979222773818871!GO:0030308;negative regulation of cell growth;0.0100595369851943!GO:0016272;prefoldin complex;0.0101819972797077!GO:0004177;aminopeptidase activity;0.0102334882752441!GO:0006289;nucleotide-excision repair;0.0105622655364297!GO:0006783;heme biosynthetic process;0.0108628156058447!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0108715578961199!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0108813908471391!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0111587161727391!GO:0006807;nitrogen compound metabolic process;0.0111837402250676!GO:0048471;perinuclear region of cytoplasm;0.0113875332869205!GO:0001726;ruffle;0.0113875332869205!GO:0006506;GPI anchor biosynthetic process;0.0115509658904944!GO:0006383;transcription from RNA polymerase III promoter;0.0122602791951445!GO:0033559;unsaturated fatty acid metabolic process;0.0124198167549877!GO:0006636;unsaturated fatty acid biosynthetic process;0.0124198167549877!GO:0051287;NAD binding;0.0126323114583587!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0126339062041546!GO:0007050;cell cycle arrest;0.0129627125803708!GO:0035258;steroid hormone receptor binding;0.0131053867961508!GO:0030131;clathrin adaptor complex;0.0134003224356124!GO:0051087;chaperone binding;0.0136415275175816!GO:0051540;metal cluster binding;0.0139458487592966!GO:0051536;iron-sulfur cluster binding;0.0139458487592966!GO:0044255;cellular lipid metabolic process;0.0139901723158206!GO:0030660;Golgi-associated vesicle membrane;0.0139901723158206!GO:0006612;protein targeting to membrane;0.0140842610909889!GO:0006402;mRNA catabolic process;0.0143155312078503!GO:0016741;transferase activity, transferring one-carbon groups;0.014366470286927!GO:0008168;methyltransferase activity;0.0145643825586398!GO:0006644;phospholipid metabolic process;0.0146115313126363!GO:0031301;integral to organelle membrane;0.0146560330249!GO:0051539;4 iron, 4 sulfur cluster binding;0.0148712310084575!GO:0046426;negative regulation of JAK-STAT cascade;0.0148712310084575!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0148712310084575!GO:0005862;muscle thin filament tropomyosin;0.0153835434557872!GO:0008047;enzyme activator activity;0.0154318285333192!GO:0015631;tubulin binding;0.0158831033101349!GO:0008243;plasminogen activator activity;0.0160755145975327!GO:0008652;amino acid biosynthetic process;0.0160755145975327!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0161133329202435!GO:0050662;coenzyme binding;0.0161133329202435!GO:0009112;nucleobase metabolic process;0.0161576499958249!GO:0000082;G1/S transition of mitotic cell cycle;0.016184195980368!GO:0051168;nuclear export;0.0162172833974414!GO:0019206;nucleoside kinase activity;0.0163470043071286!GO:0001836;release of cytochrome c from mitochondria;0.016610413633544!GO:0008092;cytoskeletal protein binding;0.0170575179658847!GO:0006790;sulfur metabolic process;0.017086513468272!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0170968491538125!GO:0006220;pyrimidine nucleotide metabolic process;0.0171558855573483!GO:0051252;regulation of RNA metabolic process;0.0174669498654304!GO:0006505;GPI anchor metabolic process;0.0175714022874647!GO:0035035;histone acetyltransferase binding;0.0175753372285597!GO:0009308;amine metabolic process;0.0185744287089226!GO:0000075;cell cycle checkpoint;0.018731354720402!GO:0030384;phosphoinositide metabolic process;0.01904400832116!GO:0000049;tRNA binding;0.0191649834498932!GO:0006066;alcohol metabolic process;0.01924137890235!GO:0040029;regulation of gene expression, epigenetic;0.0199702071037359!GO:0031272;regulation of pseudopodium formation;0.0206452568881707!GO:0031269;pseudopodium formation;0.0206452568881707!GO:0031344;regulation of cell projection organization and biogenesis;0.0206452568881707!GO:0031268;pseudopodium organization and biogenesis;0.0206452568881707!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0206452568881707!GO:0031274;positive regulation of pseudopodium formation;0.0206452568881707!GO:0045936;negative regulation of phosphate metabolic process;0.0211750919514145!GO:0030663;COPI coated vesicle membrane;0.0215814981940369!GO:0030126;COPI vesicle coat;0.0215814981940369!GO:0030508;thiol-disulfide exchange intermediate activity;0.0216394791941909!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0217318343740293!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0219572095205634!GO:0045926;negative regulation of growth;0.022884299312018!GO:0006458;'de novo' protein folding;0.02291855295134!GO:0051084;'de novo' posttranslational protein folding;0.02291855295134!GO:0030027;lamellipodium;0.0229549684185467!GO:0009303;rRNA transcription;0.0232632131205118!GO:0030659;cytoplasmic vesicle membrane;0.0239655803629248!GO:0030145;manganese ion binding;0.0240281798716857!GO:0030137;COPI-coated vesicle;0.024060323593017!GO:0004860;protein kinase inhibitor activity;0.024060323593017!GO:0006401;RNA catabolic process;0.0241095860656537!GO:0005657;replication fork;0.0242197633841452!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0242197633841452!GO:0010257;NADH dehydrogenase complex assembly;0.0242197633841452!GO:0033108;mitochondrial respiratory chain complex assembly;0.0242197633841452!GO:0032508;DNA duplex unwinding;0.0249060678418212!GO:0032392;DNA geometric change;0.0249060678418212!GO:0005874;microtubule;0.0255009466753781!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0255242625826127!GO:0000030;mannosyltransferase activity;0.025704910504503!GO:0005869;dynactin complex;0.0260654269670234!GO:0006917;induction of apoptosis;0.0262414173004558!GO:0006261;DNA-dependent DNA replication;0.026345318624496!GO:0065007;biological regulation;0.0263949059316643!GO:0016363;nuclear matrix;0.0265761637647202!GO:0043492;ATPase activity, coupled to movement of substances;0.0266001886300956!GO:0051098;regulation of binding;0.0270926979303308!GO:0031124;mRNA 3'-end processing;0.0271071303721098!GO:0000096;sulfur amino acid metabolic process;0.0271071303721098!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0273032189081096!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0276383630676128!GO:0008538;proteasome activator activity;0.0279062400308539!GO:0043086;negative regulation of catalytic activity;0.0279092905711361!GO:0008139;nuclear localization sequence binding;0.028113966069618!GO:0007051;spindle organization and biogenesis;0.0283540609533912!GO:0031529;ruffle organization and biogenesis;0.0286237816219971!GO:0006739;NADP metabolic process;0.0291117502315718!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0298376118968922!GO:0046519;sphingoid metabolic process;0.0304310950689227!GO:0007021;tubulin folding;0.0304310950689227!GO:0030041;actin filament polymerization;0.031157028018101!GO:0051101;regulation of DNA binding;0.0313729485733375!GO:0005758;mitochondrial intermembrane space;0.0313729485733375!GO:0051028;mRNA transport;0.0314881780785444!GO:0004674;protein serine/threonine kinase activity;0.0317443211896684!GO:0000209;protein polyubiquitination;0.0318369789303889!GO:0030134;ER to Golgi transport vesicle;0.0318369789303889!GO:0003724;RNA helicase activity;0.0319480910252513!GO:0009116;nucleoside metabolic process;0.0319641968138746!GO:0006268;DNA unwinding during replication;0.0325046418697435!GO:0000084;S phase of mitotic cell cycle;0.0326324992817521!GO:0012502;induction of programmed cell death;0.0333142160070564!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0336156281194932!GO:0045039;protein import into mitochondrial inner membrane;0.0336156281194932!GO:0003746;translation elongation factor activity;0.0340984661732895!GO:0048037;cofactor binding;0.0344051765757009!GO:0007346;regulation of progression through mitotic cell cycle;0.0344244102107936!GO:0016301;kinase activity;0.0355240778284051!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0356915008038772!GO:0044433;cytoplasmic vesicle part;0.0368874357272519!GO:0003729;mRNA binding;0.0373167593370233!GO:0006891;intra-Golgi vesicle-mediated transport;0.0377289938311761!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0377289938311761!GO:0004364;glutathione transferase activity;0.0377289938311761!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0377289938311761!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0377289938311761!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0377289938311761!GO:0030433;ER-associated protein catabolic process;0.038215513110294!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.038215513110294!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0384435289587932!GO:0003678;DNA helicase activity;0.0395591433567757!GO:0051775;response to redox state;0.0398999651394674!GO:0006980;redox signal response;0.0398999651394674!GO:0008629;induction of apoptosis by intracellular signals;0.0399183044345966!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0399183044345966!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0399183044345966!GO:0003756;protein disulfide isomerase activity;0.0402802128288919!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0402802128288919!GO:0043281;regulation of caspase activity;0.0409488933926279!GO:0043414;biopolymer methylation;0.041039258479086!GO:0008203;cholesterol metabolic process;0.0411737064927844!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0420032610303829!GO:0051128;regulation of cellular component organization and biogenesis;0.0424183211257054!GO:0051085;chaperone cofactor-dependent protein folding;0.0425354478503613!GO:0006519;amino acid and derivative metabolic process;0.0427364292261622!GO:0030503;regulation of cell redox homeostasis;0.0428504440070396!GO:0007034;vacuolar transport;0.0429928829743508!GO:0009119;ribonucleoside metabolic process;0.0441028583013486!GO:0005096;GTPase activator activity;0.0453845323873349!GO:0015036;disulfide oxidoreductase activity;0.0456787195308814!GO:0031970;organelle envelope lumen;0.0468437825187208!GO:0004680;casein kinase activity;0.0470020445464885!GO:0003711;transcription elongation regulator activity;0.0478557217068064!GO:0005996;monosaccharide metabolic process;0.0478557217068064!GO:0030521;androgen receptor signaling pathway;0.0483643998033812!GO:0042326;negative regulation of phosphorylation;0.048645215892269!GO:0030127;COPII vesicle coat;0.0490455141749467!GO:0012507;ER to Golgi transport vesicle membrane;0.0490455141749467!GO:0050811;GABA receptor binding;0.0493589873449266!GO:0019318;hexose metabolic process;0.0493589873449266!GO:0030128;clathrin coat of endocytic vesicle;0.0494211806722867!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0494211806722867!GO:0030122;AP-2 adaptor complex;0.0494211806722867!GO:0000118;histone deacetylase complex;0.0494211806722867
|sample_id=11512
|sample_id=11512
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=lung
|sample_tissue=lung
|top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171
|top_motifs=GZF1:2.12061073483;GTF2A1,2:1.92733532187;TAL1_TCF{3,4,12}:1.70688929365;EBF1:1.67615335381;HOX{A5,B5}:1.67352972337;ZNF238:1.58075106846;RXRA_VDR{dimer}:1.50374578736;ZNF423:1.5010685021;NR5A1,2:1.34014238023;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3250318633;ESR1:1.30531848978;ZNF148:1.30335970354;TFCP2:1.28991404191;GLI1..3:1.2894179143;SRF:1.22010033729;bHLH_family:1.17845709524;HES1:1.1450588638;ESRRA:1.0704594421;TLX1..3_NFIC{dimer}:1.01730806144;TFAP4:0.99424356528;RXR{A,B,G}:0.914672618065;PBX1:0.873700792449;HOX{A6,A7,B6,B7}:0.832162531922;LHX3,4:0.831648764853;TP53:0.788090546839;NR1H4:0.782474731392;NR3C1:0.74734200329;ZIC1..3:0.732521737061;ZBTB6:0.719831597399;XCPE1{core}:0.711817708862;TEAD1:0.66562239799;TFAP2{A,C}:0.663335343076;NR6A1:0.604954567622;RREB1:0.582829135863;TBX4,5:0.555528131925;HIC1:0.522367429074;GFI1B:0.499413340875;HAND1,2:0.498811852852;TOPORS:0.498475366174;HNF4A_NR2F1,2:0.470406270955;SP1:0.468736194183;LMO2:0.463959487628;GTF2I:0.459950009675;LEF1_TCF7_TCF7L1,2:0.44711434228;TBP:0.41949883084;STAT5{A,B}:0.403437038102;CRX:0.400864944206;NFE2L2:0.395879304734;NANOG:0.382199976532;GFI1:0.345850743057;KLF4:0.342422337037;GCM1,2:0.255819339597;DBP:0.252216976779;PAX5:0.246670409462;IKZF1:0.237953116614;SPZ1:0.230236565762;POU2F1..3:0.214604869553;TFAP2B:0.204051572319;HNF1A:0.193113958349;REST:0.180388440665;JUN:0.171130865869;SOX17:0.167502212373;MEF2{A,B,C,D}:0.166053911169;POU5F1:0.158296123806;BACH2:0.139253337417;MAFB:0.121450867848;NKX2-3_NKX2-5:0.111608938912;PRRX1,2:0.108081288484;FOS_FOS{B,L1}_JUN{B,D}:0.105733739251;ALX4:0.0973226781348;NFE2L1:0.0958873715005;NHLH1,2:0.0851407753635;FOXM1:0.0837126057889;HMX1:0.0805585129622;PPARG:0.0742755028995;FOXQ1:0.0739377891971;NKX3-1:0.0582420370756;RUNX1..3:0.0343362653543;AR:0.0246696463714;NKX2-2,8:0.0181448639425;TEF:0.0174235775482;NFE2:0.00624401045858;STAT2,4,6:0.00288164116257;FOSL2:-0.00349444413199;MTF1:-0.00579336432639;SOX{8,9,10}:-0.0150239367185;HLF:-0.0264757068424;POU3F1..4:-0.0276641185631;PATZ1:-0.0361056760842;EP300:-0.0745501412913;TFDP1:-0.0846183387908;PAX8:-0.091891781034;UFEwm:-0.0960792496911;MYBL2:-0.0983334246313;PAX1,9:-0.100948926384;NFIL3:-0.108753101174;MTE{core}:-0.120482755908;ONECUT1,2:-0.12606924827;MYOD1:-0.127292582555;ADNP_IRX_SIX_ZHX:-0.132242350827;MZF1:-0.13315830132;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.133638347742;CEBPA,B_DDIT3:-0.154939079893;FOXL1:-0.16478652657;ATF6:-0.169765029111;NFY{A,B,C}:-0.224269108656;XBP1:-0.224756632629;NFKB1_REL_RELA:-0.226335822804;ZNF384:-0.228231628109;AHR_ARNT_ARNT2:-0.234801588982;E2F1..5:-0.262596358911;SNAI1..3:-0.271867726337;SOX5:-0.274843373046;SMAD1..7,9:-0.282737584336;GATA6:-0.288996522343;HIF1A:-0.303062702266;NFIX:-0.310400232081;MAZ:-0.319014985118;CDC5L:-0.32005810374;ZNF143:-0.322745752515;ARID5B:-0.349169038791;RFX1:-0.363854515446;OCT4_SOX2{dimer}:-0.386938382594;POU6F1:-0.389327453905;POU1F1:-0.389729977996;ETS1,2:-0.390507356134;MYFfamily:-0.391605998957;NFATC1..3:-0.396132203517;HOXA9_MEIS1:-0.396856021702;EN1,2:-0.401880383978;NKX6-1,2:-0.411006247027;PRDM1:-0.425214852345;EGR1..3:-0.431918291975;FOX{F1,F2,J1}:-0.448460148129;BREu{core}:-0.478738554967;CUX2:-0.482097506027;T:-0.484478715782;RORA:-0.487464501301;MYB:-0.489513041203;RFX2..5_RFXANK_RFXAP:-0.496538589774;NKX3-2:-0.502456446152;SPIB:-0.512613314808;YY1:-0.521099866591;GATA4:-0.530555063011;TGIF1:-0.537349789225;DMAP1_NCOR{1,2}_SMARC:-0.555210564408;MED-1{core}:-0.565397021641;HSF1,2:-0.568941971907;FOX{I1,J2}:-0.586342169883;NANOG{mouse}:-0.610313656351;HBP1_HMGB_SSRP1_UBTF:-0.620613251216;AIRE:-0.649789244718;PDX1:-0.65139850186;PITX1..3:-0.673490710355;HOX{A4,D4}:-0.676097274295;FOXA2:-0.719200371818;ZEB1:-0.720608280877;PAX3,7:-0.754446747178;EVI1:-0.760462206293;FOXP3:-0.771534756947;NRF1:-0.773734689944;ZFP161:-0.825972622039;SPI1:-0.831657522039;SREBF1,2:-0.868396295324;SOX2:-0.872125784205;VSX1,2:-0.879618000355;IRF1,2:-0.883692678633;PAX2:-0.891017386506;ALX1:-0.891058112941;ATF2:-0.895867430258;PAX6:-0.907146786435;FOX{D1,D2}:-0.914189432103;FOXO1,3,4:-0.916725597784;TLX2:-0.93532266376;ELK1,4_GABP{A,B1}:-0.948015945104;CREB1:-0.954690730951;PAX4:-0.981736528445;CDX1,2,4:-1.04365140739;FOXD3:-1.06695906157;IRF7:-1.1253703157;HMGA1,2:-1.12825418254;FOXP1:-1.13494642781;NKX2-1,4:-1.18362461379;ELF1,2,4:-1.24078349424;ATF5_CREB3:-1.26738204839;ZBTB16:-1.27982383745;ATF4:-1.31776474958;IKZF2:-1.31853720905;STAT1,3:-1.33776697883;BPTF:-1.48163853731;RBPJ:-2.0052548349;FOXN1:-2.26479405171
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11512-119G9;search_select_hide=table117:FF:11512-119G9
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Smooth Muscle Cells - Bronchial, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11328
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:3982
catalog numberSC3405
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005960
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11328 CAGE DRX008478 DRR009350
Accession ID Hg19

Library idBAMCTSS
CNhs11328 DRZ000775 DRZ002160
Accession ID Hg38

Library idBAMCTSS
CNhs11328 DRZ012125 DRZ013510
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005960
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.TAGCTT sRNA-Seq DRX037040 DRR041406
Accession ID Hg19

Library idBAMCTSS
SRhi10004.TAGCTT DRZ007048


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0994
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.189
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.099
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.126
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.561
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.179
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.247
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00764
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.33
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0136
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.372
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0989
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.099
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.484
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.362
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.179
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11328

Jaspar motifP-value
MA0002.20.175
MA0003.10.285
MA0004.10.301
MA0006.10.439
MA0007.10.0453
MA0009.10.258
MA0014.10.984
MA0017.10.0862
MA0018.20.00167
MA0019.10.697
MA0024.10.0294
MA0025.10.113
MA0027.10.699
MA0028.10.017
MA0029.10.608
MA0030.10.218
MA0031.10.00469
MA0035.20.265
MA0038.10.386
MA0039.20.446
MA0040.10.241
MA0041.10.308
MA0042.10.772
MA0043.19.10403e-5
MA0046.10.0226
MA0047.20.675
MA0048.10.513
MA0050.11.26428e-6
MA0051.10.00183
MA0052.10.0123
MA0055.10.201
MA0057.10.133
MA0058.10.243
MA0059.10.215
MA0060.10.315
MA0061.10.733
MA0062.26.4049e-6
MA0065.20.033
MA0066.10.195
MA0067.10.0309
MA0068.10.462
MA0069.10.407
MA0070.10.00661
MA0071.10.0246
MA0072.10.767
MA0073.10.802
MA0074.10.221
MA0076.19.44043e-4
MA0077.10.362
MA0078.10.598
MA0079.20.89
MA0080.21.50633e-5
MA0081.10.0278
MA0083.19.13051e-8
MA0084.10.793
MA0087.10.746
MA0088.10.495
MA0090.10.0188
MA0091.10.00855
MA0092.10.132
MA0093.10.338
MA0099.23.86915e-4
MA0100.10.345
MA0101.10.604
MA0102.20.0117
MA0103.10.631
MA0104.20.745
MA0105.10.531
MA0106.10.0542
MA0107.10.7
MA0108.25.49168e-7
MA0111.10.369
MA0112.20.00407
MA0113.10.0517
MA0114.10.0921
MA0115.10.442
MA0116.10.299
MA0117.10.396
MA0119.10.0551
MA0122.10.891
MA0124.10.196
MA0125.10.952
MA0131.10.189
MA0135.10.18
MA0136.16.7214e-7
MA0137.20.00893
MA0138.20.324
MA0139.10.587
MA0140.10.425
MA0141.10.022
MA0142.10.814
MA0143.10.573
MA0144.10.513
MA0145.10.17
MA0146.10.0484
MA0147.10.648
MA0148.10.959
MA0149.10.491
MA0150.10.747
MA0152.10.548
MA0153.10.131
MA0154.10.159
MA0155.10.0769
MA0156.18.52834e-6
MA0157.10.0676
MA0159.10.571
MA0160.10.0579
MA0162.10.114
MA0163.10.164
MA0164.10.663
MA0258.10.0302
MA0259.10.795



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11328

Novel motifP-value
10.67
100.791
1000.644
1010.753
1020.895
1030.404
1040.292
1050.124
1060.0407
1070.0261
1080.359
1090.068
110.046
1100.111
1110.764
1120.672
1130.466
1140.626
1150.4
1160.0815
1170.9
1180.684
1190.473
120.343
1200.336
1210.441
1220.616
1230.0593
1240.222
1250.366
1260.497
1270.384
1280.0389
1290.242
130.398
1300.149
1310.789
1320.221
1330.864
1340.212
1350.173
1360.509
1370.146
1380.344
1390.409
140.953
1400.512
1410.408
1420.781
1430.0421
1440.98
1450.151
1460.239
1470.386
1480.932
1490.036
150.901
1500.257
1510.478
1520.176
1530.402
1540.343
1550.4
1560.631
1570.0742
1580.151
1590.713
160.103
1600.0154
1610.592
1620.202
1630.706
1640.778
1650.237
1660.836
1670.268
1680.839
1690.0644
170.135
180.103
190.0537
20.23
200.477
210.464
220.0774
230.157
240.264
250.865
260.0244
270.228
280.303
290.973
30.441
300.166
310.261
321.18824e-5
330.359
340.139
350.968
360.881
370.27
380.386
390.222
40.314
400.0273
410.513
420.639
430.194
440.739
450.321
460.0896
470.32
480.24
490.178
50.924
500.394
510.284
520.365
530.822
540.251
550.533
560.231
570.231
580.799
590.0286
60.644
600.272
610.644
620.944
630.188
640.121
650.033
660.307
670.758
680.109
690.0352
70.748
700.099
710.127
720.858
730.103
740.92
750.795
760.49
770.0241
780.971
790.438
80.0451
800.643
810.521
820.452
830.89
840.501
850.159
860.875
870.442
880.223
890.202
90.183
900.0306
910.25
920.22
930.957
940.261
950.249
960.805
970.391
980.164
990.00262



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11328


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000167 (smooth muscle cell sample)
0000004 (tissue sample)
0000179 (human bronchial smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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